Rh6BG448000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0015876
Physical Location & Seq
Reverse (-)
66317660 .. 66318923
1264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG448000.1

Sequence Viewer

Length: 705 bp
ATGATTGATTACCTTGGAATTGTTGTAGCCTTTTCTTCTATTTGCTCAGCTTGCGACTGTCAAAGTAGTCTCAACAAGGATTATGTGCTTTCTGAAATCTTTGATCTCCCTTATTTTGTTCAATTGGTTTTTGCAGAGTTGCCTTCTGAGATTGAAGAAAACGAGTCTGATTCAACATTGCCAAGAAGCCAATCTGATACAAACACTGAAGCCTTGAGGGCCATTGATACCCAAGTCCAGCAACTCCTCTCCTCATTAACAGCTCAAAATGCACCACCACCACCATCATCGTCTGAAAATCAAAGGCGGCCGCTTTTCACTGCCAGTGGAGTGAGTAGTGCCATTGCAGAAACAGAAAGAACCCGCCTTTTGTTTTCGGTAGCAGTAGCAATGTTGGTGGTTTTAGTTCATCTGGGTTTTCCTTTAATGGGGACTAGTAACATAGTGAAGACCCTGTTGGGTTTTCGGCCGTTGTACTTGGTTTTGCTGACCAATGTGACATTTGTGCTGGCAAGGATTCTTGGTAAGCAGAGAGTCTCTGAAAGGCCTGGAGAGATTAGAACTTCGGCTGAAGGAATTGAGTGGGTTGCTCAGTTAGGGAGGGCTGTAGAGATAGGCTTGGTAGCGCAGAAGGTACTTGATGCTCTGTTTATGGATTGTGCTGTGTATGCAATAATAGTTGTATGTGGTCTCTCTTCTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

234

Amino Acids

25.39

Weight (kDa)

4.7

Isoelectric Point (pI)

51.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015876)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32680
fragaria_vesca FvH4_2g36330
malus_domestica MD15G1099900.v1.1
prunus_persica Prupe.1G454700_v2.0.a1
pyrus_communis pycom08g10100 pycom15g09190
rosa_chinensis RchiOBHm_Chr6g0305551
rosa_multiflora Rmu_sc0000841.1_g000003 Rmu_sc0001153.1_g000006
rosa_roxburghii Rroxscaffold_7G00162580
rosa_rugosa Rorug06G0341600
rosa_samantha Rh6AG453600 Rh6BG448000 Rh6CG467400
rosa_wichuraiana Rw6G039530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 307, 311, 364
AcoI YGGCCR 2 cut(s) 308, 467
AcuI CTGAAG 2 cut(s) 228, 591
AfaI GTAC 2 cut(s) 476, 636
AfiI CCNNNNNNNGG 1 cut(s) 428
AgsI TTSAA 3 cut(s) 122, 155, 174
AhlI ACTAGT 1 cut(s) 434
AjnI CCWGG 1 cut(s) 547
AjuI GAANNNNNNNTTGG 2 cut(s) 440, 472
AluBI AGCT 2 cut(s) 50, 263
AluI AGCT 2 cut(s) 50, 263
Alw26I GTCTC 3 cut(s) 74, 541, 695
AoxI GGCC 4 cut(s) 219, 308, 467, 545
AspLEI GCGC 1 cut(s) 628
AspS9I GGNCC 1 cut(s) 219
BaeI ACNNNNGTAYC 2 cut(s) 219, 252
BbsI GAAGAC 1 cut(s) 455
BccI CCATC 1 cut(s) 292
BceAI ACGGC 1 cut(s) 454
BciT130I CCWGG 1 cut(s) 549
BcoDI GTCTC 3 cut(s) 74, 541, 695
BcuI ACTAGT 1 cut(s) 434
BfaI CTAG 1 cut(s) 435
BfmI CTRYAG 1 cut(s) 606
BglI GCCNNNNNGGC 1 cut(s) 218
BisI GCNGC 2 cut(s) 308, 311
BlpI GCTNAGC 1 cut(s) 46
BlsI GCNGC 2 cut(s) 309, 312
Bme1390I CCNGG 1 cut(s) 549
BmgT120I GGNCC 1 cut(s) 219
BmrFI CCNGG 1 cut(s) 549
BmsI GCATC 1 cut(s) 631
BpiI GAAGAC 1 cut(s) 455
BpmI CTGGAG 1 cut(s) 570
Bpu1102I GCTNAGC 1 cut(s) 46
BpuEI CTTGAG 1 cut(s) 235
BsaI GGTCTC 1 cut(s) 695
BsaJI CCNNGG 1 cut(s) 13
Bsc4I CCNNNNNNNGG 1 cut(s) 428
Bse1I ACTGG 1 cut(s) 324
Bse3DI GCAATG 3 cut(s) 176, 342, 396
BseBI CCWGG 1 cut(s) 549
BseDI CCNNGG 1 cut(s) 13
BseLI CCNNNNNNNGG 1 cut(s) 428
BseMI GCAATG 3 cut(s) 176, 342, 396
BseMII CTCAG 3 cut(s) 60, 138, 605
BseNI ACTGG 1 cut(s) 324
BseRI GAGGAG 2 cut(s) 236, 241
BseX3I CGGCCG 2 cut(s) 308, 467
Bsh1285I CGRYCG 2 cut(s) 311, 470
BshFI GGCC 4 cut(s) 221, 310, 469, 547
BsiEI CGRYCG 2 cut(s) 311, 470
BslFI GGGAC 1 cut(s) 445
BslI CCNNNNNNNGG 1 cut(s) 428
BsmAI GTCTC 3 cut(s) 74, 541, 695
BsmFI GGGAC 1 cut(s) 445
BsnI GGCC 4 cut(s) 221, 310, 469, 547
Bso31I GGTCTC 1 cut(s) 695
Bsp143I GATC 1 cut(s) 103
Bsp1720I GCTNAGC 1 cut(s) 46
BspACI CCGC 3 cut(s) 307, 311, 364
BspANI GGCC 4 cut(s) 221, 310, 469, 547
BspCNI CTCAG 3 cut(s) 59, 139, 604
BspTNI GGTCTC 1 cut(s) 695
BsrDI GCAATG 3 cut(s) 176, 342, 396
BsrI ACTGG 1 cut(s) 324
BssECI CCNNGG 1 cut(s) 13
BssMI GATC 1 cut(s) 103
BssT1I CCWWGG 1 cut(s) 13
Bst2UI CCWGG 1 cut(s) 549
Bst4CI ACNGT 1 cut(s) 59
Bst6I CTCTTC 1 cut(s) 700
BstC8I GCNNGC 2 cut(s) 52, 510
BstDEI CTNAG 3 cut(s) 46, 147, 591
BstHHI GCGC 1 cut(s) 628
BstKTI GATC 1 cut(s) 106
BstMAI GTCTC 3 cut(s) 74, 541, 695
BstMBI GATC 1 cut(s) 103
BstMCI CGRYCG 2 cut(s) 311, 470
BstMWI GCNNNNNNNGC 4 cut(s) 51, 218, 269, 668
BstNI CCWGG 1 cut(s) 549
BstSCI CCNGG 1 cut(s) 547
BstSFI CTRYAG 1 cut(s) 606
BstV2I GAAGAC 1 cut(s) 455
BstZI CGGCCG 2 cut(s) 308, 467
BsuRI GGCC 4 cut(s) 221, 310, 469, 547
BtsI GCAGTG 1 cut(s) 318
BtsIMutI CAGTG 3 cut(s) 204, 318, 331
Cac8I GCNNGC 2 cut(s) 52, 510
CciNI GCGGCCGC 1 cut(s) 308
CfoI GCGC 1 cut(s) 628
Cfr13I GGNCC 1 cut(s) 219
Csp6I GTAC 2 cut(s) 475, 635
CspCI CAANNNNNGTGG 2 cut(s) 378, 413
CviQI GTAC 2 cut(s) 475, 635
DdeI CTNAG 3 cut(s) 46, 147, 591
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
EaeI YGGCCR 2 cut(s) 308, 467
EagI CGGCCG 2 cut(s) 308, 467
Eam1104I CTCTTC 1 cut(s) 700
EarI CTCTTC 1 cut(s) 700
EclXI CGGCCG 2 cut(s) 308, 467
Eco130I CCWWGG 1 cut(s) 13
Eco147I AGGCCT 1 cut(s) 547
Eco31I GGTCTC 1 cut(s) 695
Eco52I CGGCCG 2 cut(s) 308, 467
Eco57I CTGAAG 2 cut(s) 228, 591
EcoRII CCWGG 1 cut(s) 547
EcoT14I CCWWGG 1 cut(s) 13
ErhI CCWWGG 1 cut(s) 13
FaiI YATR 6 cut(s) 84, 443, 653, 669, 685, 703
FaqI GGGAC 1 cut(s) 445
FauI CCCGC 1 cut(s) 371
Fnu4HI GCNGC 2 cut(s) 308, 311
Fsp4HI GCNGC 2 cut(s) 308, 311
FspBI CTAG 1 cut(s) 435
GlaI GCGC 1 cut(s) 627
GluI GCNGC 2 cut(s) 308, 311
GsuI CTGGAG 1 cut(s) 570
HaeIII GGCC 4 cut(s) 221, 310, 469, 547
HhaI GCGC 1 cut(s) 628
Hin6I GCGC 1 cut(s) 626
HinP1I GCGC 1 cut(s) 626
HinfI GANTC 4 cut(s) 164, 170, 517, 534
Hpy188I TCNGA 6 cut(s) 94, 148, 169, 196, 295, 541
HpyAV CCTTC 3 cut(s) 153, 566, 625
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4V TGCA 5 cut(s) 134, 272, 347, 671, 701
HpyF10VI GCNNNNNNNGC 4 cut(s) 51, 218, 269, 668
HpyF3I CTNAG 3 cut(s) 46, 147, 591
HspAI GCGC 1 cut(s) 626
Kzo9I GATC 1 cut(s) 103
LpnPI CCDG 7 cut(s) 251, 337, 398, 467, 494, 534, 561
LweI GCATC 1 cut(s) 631
MaeI CTAG 1 cut(s) 435
MaeIII GTNAC 2 cut(s) 437, 496
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MboII GAAGA 4 cut(s) 27, 167, 460, 687
MfeI CAATTG 1 cut(s) 122
MluCI AATT 3 cut(s) 18, 122, 576
MlyI GAGTC 2 cut(s) 173, 543
MnlI CCTC 4 cut(s) 210, 257, 262, 594
MseI TTAA 2 cut(s) 257, 425
MspR9I CCNGG 1 cut(s) 549
MunI CAATTG 1 cut(s) 122
MvaI CCWGG 1 cut(s) 549
MwoI GCNNNNNNNGC 4 cut(s) 51, 218, 269, 668
NdeII GATC 1 cut(s) 103
NmuCI GTSAC 1 cut(s) 496
NotI GCGGCCGC 1 cut(s) 308
PceI AGGCCT 1 cut(s) 547
PfeI GAWTC 2 cut(s) 170, 517
PkrI GCNGC 2 cut(s) 309, 312
PleI GAGTC 2 cut(s) 172, 542
PpsI GAGTC 2 cut(s) 172, 542
Psp6I CCWGG 1 cut(s) 547
PspGI CCWGG 1 cut(s) 547
PspPI GGNCC 1 cut(s) 219
RsaI GTAC 2 cut(s) 476, 636
RsaNI GTAC 2 cut(s) 475, 635
SaqAI TTAA 2 cut(s) 257, 425
SatI GCNGC 2 cut(s) 308, 311
Sau3AI GATC 1 cut(s) 103
Sau96I GGNCC 1 cut(s) 219
SchI GAGTC 2 cut(s) 173, 543
ScrFI CCNGG 1 cut(s) 549
SetI ASST 4 cut(s) 15, 52, 265, 636
SfaNI GCATC 1 cut(s) 631
SfcI CTRYAG 1 cut(s) 606
SmlI CTYRAG 1 cut(s) 214
SmoI CTYRAG 1 cut(s) 214
SpeI ACTAGT 1 cut(s) 434
Sse9I AATT 3 cut(s) 18, 122, 576
SseBI AGGCCT 1 cut(s) 547
SsiI CCGC 3 cut(s) 307, 311, 364
SspMI CTAG 1 cut(s) 435
StuI AGGCCT 1 cut(s) 547
StyD4I CCNGG 1 cut(s) 547
StyI CCWWGG 1 cut(s) 13
TaaI ACNGT 1 cut(s) 59
TasI AATT 3 cut(s) 18, 122, 576
TatI WGTACW 1 cut(s) 474
TauI GCSGC 2 cut(s) 310, 313
TfiI GAWTC 2 cut(s) 170, 517
Tru1I TTAA 2 cut(s) 257, 425
Tru9I TTAA 2 cut(s) 257, 425
TscAI CASTG 3 cut(s) 211, 325, 331
TseFI GTSAC 1 cut(s) 496
Tsp45I GTSAC 1 cut(s) 496
TspDTI ATGAA 1 cut(s) 398
TspRI CASTG 3 cut(s) 211, 325, 331
XspI CTAG 1 cut(s) 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.