Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0015876

Physical Location & Seq

Genomic Coordinates Reverse (-)

38197462 .. 38198758

Gene Structure 1297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G454700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGCCACAAACAGCAGAGAAGCCCGAAGGAGGAAGATAATGGAGCGAGGATCCGACCGCCTAGCCCTAATCACGGGTCGGATCCAAACCCTACCATCCTCCTCTTCTTCATCAACAGACCCAGCAACTCACCCTGAAGATACAGACCCACCATCGCACCCGTTGATTTCCCATGATCAGGAGCCCCAAATCCATGTCCCAGATCAAATCCCAGTGGTCACCCCTGAGATTGAGGAAAAGGGGTTTGATTTGCAATGTGACACAAATACTGAAGAAGTCTTTGGAGCCACTGATTCACAAACCCAACCACTTGTGTCCTCATCATCAAGGGTTGAAAGACCATCACCATCATCATTACCAACATTAACACCATTTCAAAAACCTAGACTTGTCACTTGGACTGGAATAAGTGATGCCATTGAAGCAACAGAAGGGACCCGCATTTACATTTCATTGGCAGTAGCCTTGTTGGTGGTTTTAGCCCATCTGGGTTTTCCTTTACTTGGGAGTAAAATGGTGAAGACTCTTTTGGGTTTTAGGCCTCTCTATCTAGTTTTGGTGACCAATGTAACACTCGTGCTTGTGCGAATTGTCGAGAGCGGTAGACGAAGACTCTCTGGAATGGCTGGCAGATTTGGTGAGCTTAATATGCCAGTTGACGGATATGAATGGGCTGATCGGTTAGGCAGGACTTTACAGGCAGGCTTGGTGATGAAGAAGGTACTTGATGCTCTGTTCATGGACTGTGCTGTGTATGCAATAATTGTTGTATGTGGCCTCTCTTTTGCACAGCAGTTGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

268

Amino Acids

29.22

Weight (kDa)

5.98

Isoelectric Point (pI)

48.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32680
fragaria_vesca	FvH4_2g36330
malus_domestica	MD15G1099900.v1.1
prunus_persica	Prupe.1G454700_v2.0.a1
pyrus_communis	pycom08g10100 pycom15g09190
rosa_chinensis	RchiOBHm_Chr6g0305551
rosa_multiflora	Rmu_sc0000841.1_g000003 Rmu_sc0001153.1_g000006
rosa_roxburghii	Rroxscaffold_7G00162580
rosa_rugosa	Rorug06G0341600
rosa_samantha	Rh6AG453600 Rh6BG448000 Rh6CG467400
rosa_wichuraiana	Rw6G039530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	600
AccI	GTMKAC	1 cut(s)	604
AciI	CCGC	3 cut(s)	58, 439, 600
AclWI	GGATC	4 cut(s)	45, 58, 76, 89
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	2 cut(s)	156, 291
AfaI	GTAC	1 cut(s)	723
AfiI	CCNNNNNNNGG	5 cut(s)	30, 73, 178, 503, 659
AgsI	TTSAA	3 cut(s)	335, 377, 422
AjuI	GAANNNNNNNTTGG	4 cut(s)	264, 296, 512, 544
AluBI	AGCT	2 cut(s)	643, 801
AluI	AGCT	2 cut(s)	643, 801
AlwI	GGATC	4 cut(s)	45, 58, 76, 89
AoxI	GGCC	3 cut(s)	3, 539, 775
AspS9I	GGNCC	1 cut(s)	435
AsuHPI	GGTGA	7 cut(s)	122, 211, 336, 529, 571, 650, 721
AvaII	GGWCC	1 cut(s)	435
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	2 cut(s)	50, 81
BanII	GRGCYC	1 cut(s)	186
BauI	CACGAG	1 cut(s)	575
BbsI	GAAGAC	2 cut(s)	527, 616
BccI	CCATC	5 cut(s)	103, 160, 349, 355, 492
BclI	TGATCA	1 cut(s)	175
BfaI	CTAG	4 cut(s)	62, 384, 551, 802
Bme18I	GGWCC	1 cut(s)	435
BmgT120I	GGNCC	1 cut(s)	435
BmiI	GGNNCC	6 cut(s)	52, 83, 183, 286, 436, 437
BmrI	ACTGGG	1 cut(s)	206
BmsI	GCATC	2 cut(s)	403, 718
BmuI	ACTGGG	1 cut(s)	206
BpiI	GAAGAC	2 cut(s)	527, 616
Bsc4I	CCNNNNNNNGG	5 cut(s)	30, 73, 178, 503, 659
Bse1I	ACTGG	3 cut(s)	212, 406, 653
Bse3DI	GCAATG	1 cut(s)	260
BseGI	GGATG	1 cut(s)	95
BseLI	CCNNNNNNNGG	5 cut(s)	30, 73, 178, 503, 659
BseMI	GCAATG	1 cut(s)	260
BseMII	CTCAG	1 cut(s)	216
BseNI	ACTGG	3 cut(s)	212, 406, 653
BseRI	GAGGAG	1 cut(s)	91
BseYI	CCCAGC	1 cut(s)	121
Bsh1285I	CGRYCG	1 cut(s)	58
BshFI	GGCC	3 cut(s)	5, 541, 777
BsiEI	CGRYCG	1 cut(s)	58
BslFI	GGGAC	2 cut(s)	182, 448
BslI	CCNNNNNNNGG	5 cut(s)	30, 73, 178, 503, 659
BsmFI	GGGAC	2 cut(s)	182, 448
BsnI	GGCC	3 cut(s)	5, 541, 777
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp143I	GATC	5 cut(s)	50, 81, 175, 202, 676
BspACI	CCGC	3 cut(s)	58, 439, 600
BspANI	GGCC	3 cut(s)	5, 541, 777
BspCNI	CTCAG	1 cut(s)	217
BspLI	GGNNCC	6 cut(s)	52, 83, 183, 286, 436, 437
BspPI	GGATC	4 cut(s)	45, 58, 76, 89
BsrBI	CCGCTC	1 cut(s)	600
BsrDI	GCAATG	1 cut(s)	260
BsrI	ACTGG	3 cut(s)	212, 406, 653
BssMI	GATC	5 cut(s)	50, 81, 175, 202, 676
BssSI	CACGAG	1 cut(s)	575
Bst2BI	CACGAG	1 cut(s)	575
Bst4CI	ACNGT	1 cut(s)	746
Bst6I	CTCTTC	1 cut(s)	109
BstC8I	GCNNGC	2 cut(s)	628, 703
BstDEI	CTNAG	1 cut(s)	225
BstEII	GGTNACC	2 cut(s)	217, 559
BstF5I	GGATG	1 cut(s)	95
BstKTI	GATC	5 cut(s)	53, 84, 178, 205, 679
BstMBI	GATC	5 cut(s)	50, 81, 175, 202, 676
BstMCI	CGRYCG	1 cut(s)	58
BstMWI	GCNNNNNNNGC	3 cut(s)	422, 649, 755
BstPI	GGTNACC	2 cut(s)	217, 559
BstV2I	GAAGAC	2 cut(s)	527, 616
BstX2I	RGATCY	2 cut(s)	50, 81
BstYI	RGATCY	2 cut(s)	50, 81
BsuRI	GGCC	3 cut(s)	5, 541, 777
BtgZI	GCGATG	1 cut(s)	138
BtsCI	GGATG	1 cut(s)	95
BtsIMutI	CAGTG	2 cut(s)	219, 288
Cac8I	GCNNGC	2 cut(s)	628, 703
Cfr13I	GGNCC	1 cut(s)	435
Csp6I	GTAC	1 cut(s)	722
CviAII	CATG	3 cut(s)	173, 194, 739
CviQI	GTAC	1 cut(s)	722
DdeI	CTNAG	1 cut(s)	225
DpnI	GATC	5 cut(s)	52, 83, 177, 204, 678
DpnII	GATC	5 cut(s)	50, 81, 175, 202, 676
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	109
EarI	CTCTTC	1 cut(s)	109
Eco147I	AGGCCT	1 cut(s)	541
Eco24I	GRGCYC	1 cut(s)	186
Eco47I	GGWCC	1 cut(s)	435
Eco57I	CTGAAG	2 cut(s)	156, 291
Eco91I	GGTNACC	2 cut(s)	217, 559
EcoO109I	RGGNCCY	1 cut(s)	435
EcoO65I	GGTNACC	2 cut(s)	217, 559
EcoT38I	GRGCYC	1 cut(s)	186
FaeI	CATG	3 cut(s)	176, 197, 742
FaiI	YATR	7 cut(s)	174, 195, 650, 666, 740, 756, 772
FaqI	GGGAC	2 cut(s)	182, 448
FatI	CATG	3 cut(s)	172, 193, 738
FauI	CCCGC	1 cut(s)	446
FbaI	TGATCA	1 cut(s)	175
FblI	GTMKAC	1 cut(s)	604
FokI	GGATG	1 cut(s)	82
FriOI	GRGCYC	1 cut(s)	186
FspBI	CTAG	4 cut(s)	62, 384, 551, 802
GsaI	CCCAGC	1 cut(s)	125
HaeIII	GGCC	3 cut(s)	5, 541, 777
Hin1II	CATG	3 cut(s)	176, 197, 742
HincII	GTYRAC	1 cut(s)	658
HindII	GTYRAC	1 cut(s)	658
HinfI	GANTC	3 cut(s)	293, 523, 612
HphI	GGTGA	7 cut(s)	122, 211, 336, 529, 571, 650, 721
Hpy166II	GTNNAC	2 cut(s)	605, 658
Hpy188I	TCNGA	2 cut(s)	55, 81
Hpy188III	TCNNGA	3 cut(s)	179, 595, 618
Hpy8I	GTNNAC	2 cut(s)	605, 658
HpyAV	CCTTC	3 cut(s)	21, 425, 712
HpyCH4III	ACNGT	1 cut(s)	746
HpyCH4V	TGCA	3 cut(s)	253, 758, 788
HpyF10VI	GCNNNNNNNGC	3 cut(s)	422, 649, 755
HpyF3I	CTNAG	1 cut(s)	225
Hsp92II	CATG	3 cut(s)	176, 197, 742
KflI	GGGWCCC	1 cut(s)	435
Ksp22I	TGATCA	1 cut(s)	175
Kzo9I	GATC	5 cut(s)	50, 81, 175, 202, 676
LmnI	GCTCC	3 cut(s)	43, 181, 284
LweI	GCATC	2 cut(s)	403, 718
MaeI	CTAG	4 cut(s)	62, 384, 551, 802
MaeIII	GTNAC	5 cut(s)	217, 257, 391, 559, 568
MalI	GATC	5 cut(s)	52, 83, 177, 204, 678
MbiI	CCGCTC	1 cut(s)	600
MboI	GATC	5 cut(s)	50, 81, 175, 202, 676
MboII	GAAGA	8 cut(s)	46, 96, 99, 149, 284, 532, 621, 727
MflI	RGATCY	2 cut(s)	50, 81
MhlI	GDGCHC	1 cut(s)	186
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	588, 762
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	517, 606
MmeI	TCCRAC	2 cut(s)	59, 78
MnlI	CCTC	8 cut(s)	24, 41, 109, 112, 226, 328, 552, 788
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	365, 645
Msp20I	TGGCCA	1 cut(s)	5
MwoI	GCNNNNNNNGC	3 cut(s)	422, 649, 755
NdeII	GATC	5 cut(s)	50, 81, 175, 202, 676
NlaIII	CATG	3 cut(s)	176, 197, 742
NlaIV	GGNNCC	6 cut(s)	52, 83, 183, 286, 436, 437
NmuCI	GTSAC	4 cut(s)	217, 257, 391, 559
PceI	AGGCCT	1 cut(s)	541
PfeI	GAWTC	1 cut(s)	293
PleI	GAGTC	2 cut(s)	517, 606
PpsI	GAGTC	2 cut(s)	517, 606
PpuMI	RGGWCCY	1 cut(s)	435
Psp5II	RGGWCCY	1 cut(s)	435
PspEI	GGTNACC	2 cut(s)	217, 559
PspFI	CCCAGC	1 cut(s)	121
PspN4I	GGNNCC	6 cut(s)	52, 83, 183, 286, 436, 437
PspPI	GGNCC	1 cut(s)	435
PspPPI	RGGWCCY	1 cut(s)	435
PsuI	RGATCY	2 cut(s)	50, 81
RsaI	GTAC	1 cut(s)	723
RsaNI	GTAC	1 cut(s)	722
SaqAI	TTAA	2 cut(s)	365, 645
Sau3AI	GATC	5 cut(s)	50, 81, 175, 202, 676
Sau96I	GGNCC	1 cut(s)	435
SchI	GAGTC	2 cut(s)	517, 606
SduI	GDGCHC	1 cut(s)	186
SetI	ASST	4 cut(s)	385, 645, 723, 803
SfaNI	GCATC	2 cut(s)	403, 718
SinI	GGWCC	1 cut(s)	435
Sse9I	AATT	2 cut(s)	588, 762
SseBI	AGGCCT	1 cut(s)	541
SsiI	CCGC	3 cut(s)	58, 439, 600
SspMI	CTAG	4 cut(s)	62, 384, 551, 802
StuI	AGGCCT	1 cut(s)	541
TaaI	ACNGT	1 cut(s)	746
TaqI	TCGA	1 cut(s)	594
TasI	AATT	2 cut(s)	588, 762
TfiI	GAWTC	1 cut(s)	293
Tru1I	TTAA	2 cut(s)	365, 645
Tru9I	TTAA	2 cut(s)	365, 645
TscAI	CASTG	2 cut(s)	219, 295
TseFI	GTSAC	4 cut(s)	217, 257, 391, 559
Tsp45I	GTSAC	4 cut(s)	217, 257, 391, 559
TspDTI	ATGAA	5 cut(s)	99, 441, 681, 727, 728
TspGWI	ACGGA	1 cut(s)	675
TspRI	CASTG	2 cut(s)	219, 295
VpaK11BI	GGWCC	1 cut(s)	435
XmiI	GTMKAC	1 cut(s)	604
XspI	CTAG	4 cut(s)	62, 384, 551, 802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.