Rh6AG453600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0015876
Physical Location & Seq
Forward (+)
63882235 .. 63883359
1125 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG453600.1

Sequence Viewer

Length: 579 bp
ATGTTGGTTTGTGCAGAGTTGCCTTCTGAGATTGAAGAAAACGAGTCTGATTCAACATTGCCAAGAAGCCAATCTGATACAAACACTGAAGCCTTGAGGGCCATTGATACCCAAGTCCAGCAACTCCTCTCCTCATTAACAGCTCAAAATGCACCACCACCACCGTCTCAAAATCAAAGGCGGCCGCTTTTTACTGCCAGTGGAGTGAGTAGTGCCATTGCAGAAACAGAAAGAACCCGCCTTTTGTTTTCGGTAGCAGTAGCAATGTTGGTGGTTTTAGTTCATCTGGGTTTTCCTTTGATGGGGACTAGTAACATAGTGAAGACCCTGTTGGGTTTTCGGCCGTTGTACTTGGTTTTGCTGACCAATGTGACATTTGTGCTGGCAAGGATTCTTGGTAAGCAGAGAGCCTCTGAAAGGCCTGGAGAGATTAGAACTTCGGCAGAAGGAATTGAGTGGGTTGCGCAGTTAGGGAGGGCTGTAGAGATAGGCTTGGTAGCGCAGAAGGTACTTGATGCTCTGTTTATGGATTGTGCTGTGTATGCAATAATAGTTGTATGTGGTCTCTCTTCTGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

20.69

Weight (kDa)

5.23

Isoelectric Point (pI)

47.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015876)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32680
fragaria_vesca FvH4_2g36330
malus_domestica MD15G1099900.v1.1
prunus_persica Prupe.1G454700_v2.0.a1
pyrus_communis pycom08g10100 pycom15g09190
rosa_chinensis RchiOBHm_Chr6g0305551
rosa_multiflora Rmu_sc0000841.1_g000003 Rmu_sc0001153.1_g000006
rosa_roxburghii Rroxscaffold_7G00162580
rosa_rugosa Rorug06G0341600
rosa_samantha Rh6AG453600 Rh6BG448000 Rh6CG467400
rosa_wichuraiana Rw6G039530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 465
AciI CCGC 3 cut(s) 181, 185, 238
AcoI YGGCCR 2 cut(s) 182, 341
AcuI CTGAAG 1 cut(s) 108
AfaI GTAC 2 cut(s) 350, 510
AfiI CCNNNNNNNGG 2 cut(s) 302, 417
AgsI TTSAA 2 cut(s) 35, 54
AhlI ACTAGT 1 cut(s) 308
AjnI CCWGG 1 cut(s) 421
AjuI GAANNNNNNNTTGG 2 cut(s) 314, 346
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
Alw26I GTCTC 2 cut(s) 171, 569
AoxI GGCC 4 cut(s) 99, 182, 341, 419
AspLEI GCGC 2 cut(s) 466, 502
AspS9I GGNCC 1 cut(s) 99
BaeI ACNNNNGTAYC 2 cut(s) 99, 132
BbsI GAAGAC 1 cut(s) 329
BccI CCATC 1 cut(s) 295
BceAI ACGGC 1 cut(s) 328
BciT130I CCWGG 1 cut(s) 423
BcoDI GTCTC 2 cut(s) 171, 569
BcuI ACTAGT 1 cut(s) 308
BfaI CTAG 1 cut(s) 309
BfmI CTRYAG 1 cut(s) 480
BglI GCCNNNNNGGC 1 cut(s) 98
BisI GCNGC 2 cut(s) 182, 185
BlsI GCNGC 2 cut(s) 183, 186
Bme1390I CCNGG 1 cut(s) 423
BmgT120I GGNCC 1 cut(s) 99
BmrFI CCNGG 1 cut(s) 423
BmsI GCATC 1 cut(s) 505
BpiI GAAGAC 1 cut(s) 329
BpmI CTGGAG 1 cut(s) 444
BpuEI CTTGAG 1 cut(s) 115
BsaI GGTCTC 1 cut(s) 569
Bsc4I CCNNNNNNNGG 2 cut(s) 302, 417
Bse1I ACTGG 1 cut(s) 198
Bse3DI GCAATG 3 cut(s) 56, 216, 270
BseBI CCWGG 1 cut(s) 423
BseLI CCNNNNNNNGG 2 cut(s) 302, 417
BseMI GCAATG 3 cut(s) 56, 216, 270
BseMII CTCAG 1 cut(s) 18
BseNI ACTGG 1 cut(s) 198
BseRI GAGGAG 2 cut(s) 116, 121
BseX3I CGGCCG 2 cut(s) 182, 341
BsgI GTGCAG 1 cut(s) 33
Bsh1285I CGRYCG 2 cut(s) 185, 344
BshFI GGCC 4 cut(s) 101, 184, 343, 421
BsiEI CGRYCG 2 cut(s) 185, 344
BslFI GGGAC 1 cut(s) 319
BslI CCNNNNNNNGG 2 cut(s) 302, 417
BsmAI GTCTC 2 cut(s) 171, 569
BsmBI CGTCTC 1 cut(s) 171
BsmFI GGGAC 1 cut(s) 319
BsnI GGCC 4 cut(s) 101, 184, 343, 421
Bso31I GGTCTC 1 cut(s) 569
BspACI CCGC 3 cut(s) 181, 185, 238
BspANI GGCC 4 cut(s) 101, 184, 343, 421
BspCNI CTCAG 1 cut(s) 19
BspTNI GGTCTC 1 cut(s) 569
BsrDI GCAATG 3 cut(s) 56, 216, 270
BsrI ACTGG 1 cut(s) 198
Bst2UI CCWGG 1 cut(s) 423
Bst4CI ACNGT 1 cut(s) 165
Bst6I CTCTTC 1 cut(s) 574
BstC8I GCNNGC 1 cut(s) 384
BstDEI CTNAG 1 cut(s) 27
BstENI CCTNNNNNAGG 1 cut(s) 415
BstHHI GCGC 2 cut(s) 466, 502
BstMAI GTCTC 2 cut(s) 171, 569
BstMCI CGRYCG 2 cut(s) 185, 344
BstMWI GCNNNNNNNGC 3 cut(s) 98, 149, 542
BstNI CCWGG 1 cut(s) 423
BstSCI CCNGG 1 cut(s) 421
BstSFI CTRYAG 1 cut(s) 480
BstV2I GAAGAC 1 cut(s) 329
BstZI CGGCCG 2 cut(s) 182, 341
BsuRI GGCC 4 cut(s) 101, 184, 343, 421
BtsIMutI CAGTG 2 cut(s) 84, 205
Cac8I GCNNGC 1 cut(s) 384
CciNI GCGGCCGC 1 cut(s) 182
CfoI GCGC 2 cut(s) 466, 502
Cfr13I GGNCC 1 cut(s) 99
Csp6I GTAC 2 cut(s) 349, 509
CspCI CAANNNNNGTGG 2 cut(s) 252, 287
CviQI GTAC 2 cut(s) 349, 509
DdeI CTNAG 1 cut(s) 27
EaeI YGGCCR 2 cut(s) 182, 341
EagI CGGCCG 2 cut(s) 182, 341
Eam1104I CTCTTC 1 cut(s) 574
EarI CTCTTC 1 cut(s) 574
EclXI CGGCCG 2 cut(s) 182, 341
Eco147I AGGCCT 1 cut(s) 421
Eco31I GGTCTC 1 cut(s) 569
Eco52I CGGCCG 2 cut(s) 182, 341
Eco57I CTGAAG 1 cut(s) 108
EcoNI CCTNNNNNAGG 1 cut(s) 415
EcoRII CCWGG 1 cut(s) 421
Esp3I CGTCTC 1 cut(s) 171
FaiI YATR 4 cut(s) 317, 527, 543, 559
FaqI GGGAC 1 cut(s) 319
FauI CCCGC 1 cut(s) 245
Fnu4HI GCNGC 2 cut(s) 182, 185
Fsp4HI GCNGC 2 cut(s) 182, 185
FspBI CTAG 1 cut(s) 309
FspI TGCGCA 1 cut(s) 465
GlaI GCGC 2 cut(s) 465, 501
GluI GCNGC 2 cut(s) 182, 185
GsuI CTGGAG 1 cut(s) 444
HaeIII GGCC 4 cut(s) 101, 184, 343, 421
HhaI GCGC 2 cut(s) 466, 502
Hin6I GCGC 2 cut(s) 464, 500
HinP1I GCGC 2 cut(s) 464, 500
HinfI GANTC 3 cut(s) 44, 50, 391
Hpy188I TCNGA 4 cut(s) 28, 49, 76, 415
HpyAV CCTTC 3 cut(s) 33, 440, 499
HpyCH4III ACNGT 1 cut(s) 165
HpyCH4V TGCA 4 cut(s) 14, 152, 221, 545
HpyF10VI GCNNNNNNNGC 3 cut(s) 98, 149, 542
HpyF3I CTNAG 1 cut(s) 27
HspAI GCGC 2 cut(s) 464, 500
LpnPI CCDG 7 cut(s) 131, 211, 272, 341, 368, 408, 435
LweI GCATC 1 cut(s) 505
MaeI CTAG 1 cut(s) 309
MaeIII GTNAC 2 cut(s) 311, 370
MboII GAAGA 3 cut(s) 47, 334, 561
MluCI AATT 1 cut(s) 450
MlyI GAGTC 1 cut(s) 53
MnlI CCTC 5 cut(s) 90, 137, 142, 421, 468
MseI TTAA 1 cut(s) 137
MspR9I CCNGG 1 cut(s) 423
MvaI CCWGG 1 cut(s) 423
MwoI GCNNNNNNNGC 3 cut(s) 98, 149, 542
NmuCI GTSAC 1 cut(s) 370
NotI GCGGCCGC 1 cut(s) 182
NsbI TGCGCA 1 cut(s) 465
PceI AGGCCT 1 cut(s) 421
PfeI GAWTC 2 cut(s) 50, 391
PkrI GCNGC 2 cut(s) 183, 186
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
Psp6I CCWGG 1 cut(s) 421
PspGI CCWGG 1 cut(s) 421
PspPI GGNCC 1 cut(s) 99
RsaI GTAC 2 cut(s) 350, 510
RsaNI GTAC 2 cut(s) 349, 509
SaqAI TTAA 1 cut(s) 137
SatI GCNGC 2 cut(s) 182, 185
Sau96I GGNCC 1 cut(s) 99
SchI GAGTC 1 cut(s) 53
ScrFI CCNGG 1 cut(s) 423
SetI ASST 2 cut(s) 145, 510
SfaNI GCATC 1 cut(s) 505
SfcI CTRYAG 1 cut(s) 480
SmlI CTYRAG 1 cut(s) 94
SmoI CTYRAG 1 cut(s) 94
SpeI ACTAGT 1 cut(s) 308
Sse9I AATT 1 cut(s) 450
SseBI AGGCCT 1 cut(s) 421
SsiI CCGC 3 cut(s) 181, 185, 238
SspMI CTAG 1 cut(s) 309
StuI AGGCCT 1 cut(s) 421
StyD4I CCNGG 1 cut(s) 421
TaaI ACNGT 1 cut(s) 165
TasI AATT 1 cut(s) 450
TatI WGTACW 1 cut(s) 348
TauI GCSGC 2 cut(s) 184, 187
TfiI GAWTC 2 cut(s) 50, 391
Tru1I TTAA 1 cut(s) 137
Tru9I TTAA 1 cut(s) 137
TscAI CASTG 2 cut(s) 91, 205
TseFI GTSAC 1 cut(s) 370
Tsp45I GTSAC 1 cut(s) 370
TspDTI ATGAA 1 cut(s) 272
TspRI CASTG 2 cut(s) 91, 205
XagI CCTNNNNNAGG 1 cut(s) 415
XspI CTAG 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.