Rmu_sc0000841.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000841.1
OG0015876
Physical Location & Seq
Reverse (-)
4186 .. 5038
853 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000841.1_g000003.1.cds

Sequence Viewer

Length: 768 bp
atggccacaaacagcagagaagccagaaggaggaggatcctggagagagggtccgaccgcctagctctaatcacaggtcggatccaaacactaccatcttcctcttcatcacccgacccacaaacccagtttgaagatacaacaacaaacccatcttctccgccgccaacttccgatgttcaggaccaaatcgccgagttgccttctgagattgaagaaaacgagtctgattcaacattgccaagaagccaatctgatacaaacactgaagccttgagggccattgatacccaagtccagcaactcctctcctcattaacagctcaaaatgcaccaccaccaccaccaccaccgtctcaaaatcaaaggcggccgctttttactgccagtggagtgagcagtgccattgcagaaacagaaagaacccgccttttgttttcggtagcagtagcaatgttggtggttttagttcatctgggttttcctttgatggggactagtaacatagtgaagaccctgttgggttttcggccgttgtacttggttttgctgaccaatgtgacatttgtgctggcaaggattcttggtaagcagagagcctctgaaaggcctggagagattagaacttcggctgaaggaattgagtgggttgcgcagttagggagggctgtagagataggcttggtagcgcagaaggtacttgatgctctgtttatggattgtgctgtgtatgcaataatagttgtatgtggtctctcttctgcgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

255

Amino Acids

27.59

Weight (kDa)

5.36

Isoelectric Point (pI)

59.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015876)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32680
fragaria_vesca FvH4_2g36330
malus_domestica MD15G1099900.v1.1
prunus_persica Prupe.1G454700_v2.0.a1
pyrus_communis pycom08g10100 pycom15g09190
rosa_chinensis RchiOBHm_Chr6g0305551
rosa_multiflora Rmu_sc0000841.1_g000003 Rmu_sc0001153.1_g000006
rosa_roxburghii Rroxscaffold_7G00162580
rosa_rugosa Rorug06G0341600
rosa_samantha Rh6AG453600 Rh6BG448000 Rh6CG467400
rosa_wichuraiana Rw6G039530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 654
AciI CCGC 6 cut(s) 58, 161, 164, 370, 374, 427
AclWI GGATC 4 cut(s) 31, 44, 76, 89
AcoI YGGCCR 3 cut(s) 3, 371, 530
AcuI CTGAAG 2 cut(s) 288, 654
AfaI GTAC 2 cut(s) 539, 699
AfiI CCNNNNNNNGG 3 cut(s) 30, 491, 606
AgsI TTSAA 3 cut(s) 134, 215, 234
AhlI ACTAGT 1 cut(s) 497
AjnI CCWGG 2 cut(s) 39, 610
AjuI GAANNNNNNNTTGG 2 cut(s) 503, 535
AluBI AGCT 2 cut(s) 65, 323
AluI AGCT 2 cut(s) 65, 323
Alw26I GTCTC 2 cut(s) 360, 758
AlwI GGATC 4 cut(s) 31, 44, 76, 89
AoxI GGCC 5 cut(s) 3, 279, 371, 530, 608
AspLEI GCGC 2 cut(s) 655, 691
AspS9I GGNCC 3 cut(s) 51, 184, 279
AsuHPI GGTGA 1 cut(s) 102
AvaII GGWCC 2 cut(s) 51, 184
BaeI ACNNNNGTAYC 2 cut(s) 279, 312
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 2 cut(s) 36, 81
BbsI GAAGAC 1 cut(s) 518
BccI CCATC 3 cut(s) 103, 160, 484
BceAI ACGGC 1 cut(s) 517
BciT130I CCWGG 2 cut(s) 41, 612
BcoDI GTCTC 2 cut(s) 360, 758
BcuI ACTAGT 1 cut(s) 497
BfaI CTAG 2 cut(s) 62, 498
BfmI CTRYAG 1 cut(s) 669
BglI GCCNNNNNGGC 1 cut(s) 278
BisI GCNGC 3 cut(s) 164, 371, 374
BlsI GCNGC 3 cut(s) 165, 372, 375
Bme1390I CCNGG 2 cut(s) 41, 612
Bme18I GGWCC 2 cut(s) 51, 184
BmgT120I GGNCC 3 cut(s) 51, 184, 279
BmiI GGNNCC 3 cut(s) 38, 52, 83
BmrFI CCNGG 2 cut(s) 41, 612
BmrI ACTGGG 1 cut(s) 121
BmsI GCATC 1 cut(s) 694
BmuI ACTGGG 1 cut(s) 121
BpiI GAAGAC 1 cut(s) 518
BpmI CTGGAG 2 cut(s) 62, 633
BpuEI CTTGAG 1 cut(s) 295
BsaI GGTCTC 1 cut(s) 758
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bsc4I CCNNNNNNNGG 3 cut(s) 30, 491, 606
Bse1I ACTGG 2 cut(s) 127, 387
Bse3DI GCAATG 3 cut(s) 236, 405, 459
BseBI CCWGG 2 cut(s) 41, 612
BseLI CCNNNNNNNGG 3 cut(s) 30, 491, 606
BseMI GCAATG 3 cut(s) 236, 405, 459
BseMII CTCAG 1 cut(s) 198
BseNI ACTGG 2 cut(s) 127, 387
BseRI GAGGAG 3 cut(s) 46, 296, 301
BseX3I CGGCCG 2 cut(s) 371, 530
Bsh1285I CGRYCG 3 cut(s) 58, 374, 533
BshFI GGCC 5 cut(s) 5, 281, 373, 532, 610
BsiEI CGRYCG 3 cut(s) 58, 374, 533
BslFI GGGAC 1 cut(s) 508
BslI CCNNNNNNNGG 3 cut(s) 30, 491, 606
BsmAI GTCTC 2 cut(s) 360, 758
BsmBI CGTCTC 1 cut(s) 360
BsmFI GGGAC 1 cut(s) 508
BsnI GGCC 5 cut(s) 5, 281, 373, 532, 610
Bso31I GGTCTC 1 cut(s) 758
Bsp143I GATC 2 cut(s) 36, 81
BspACI CCGC 6 cut(s) 58, 161, 164, 370, 374, 427
BspANI GGCC 5 cut(s) 5, 281, 373, 532, 610
BspCNI CTCAG 1 cut(s) 199
BspLI GGNNCC 3 cut(s) 38, 52, 83
BspPI GGATC 4 cut(s) 31, 44, 76, 89
BspTNI GGTCTC 1 cut(s) 758
BsrDI GCAATG 3 cut(s) 236, 405, 459
BsrI ACTGG 2 cut(s) 127, 387
BssMI GATC 2 cut(s) 36, 81
Bst2UI CCWGG 2 cut(s) 41, 612
Bst4CI ACNGT 1 cut(s) 354
Bst6I CTCTTC 2 cut(s) 109, 763
BstC8I GCNNGC 1 cut(s) 573
BstDEI CTNAG 1 cut(s) 207
BstENI CCTNNNNNAGG 1 cut(s) 604
BstHHI GCGC 2 cut(s) 655, 691
BstKTI GATC 2 cut(s) 39, 84
BstMAI GTCTC 2 cut(s) 360, 758
BstMBI GATC 2 cut(s) 36, 81
BstMCI CGRYCG 3 cut(s) 58, 374, 533
BstMWI GCNNNNNNNGC 3 cut(s) 278, 329, 731
BstNI CCWGG 2 cut(s) 41, 612
BstSCI CCNGG 2 cut(s) 39, 610
BstSFI CTRYAG 1 cut(s) 669
BstV2I GAAGAC 1 cut(s) 518
BstX2I RGATCY 2 cut(s) 36, 81
BstYI RGATCY 2 cut(s) 36, 81
BstZI CGGCCG 2 cut(s) 371, 530
BsuRI GGCC 5 cut(s) 5, 281, 373, 532, 610
BtsI GCAGTG 1 cut(s) 406
BtsIMutI CAGTG 3 cut(s) 264, 394, 406
Cac8I GCNNGC 1 cut(s) 573
CciNI GCGGCCGC 1 cut(s) 371
CfoI GCGC 2 cut(s) 655, 691
Cfr13I GGNCC 3 cut(s) 51, 184, 279
Csp6I GTAC 2 cut(s) 538, 698
CspCI CAANNNNNGTGG 2 cut(s) 441, 476
CviQI GTAC 2 cut(s) 538, 698
DdeI CTNAG 1 cut(s) 207
DpnI GATC 2 cut(s) 38, 83
DpnII GATC 2 cut(s) 36, 81
EaeI YGGCCR 3 cut(s) 3, 371, 530
EagI CGGCCG 2 cut(s) 371, 530
Eam1104I CTCTTC 2 cut(s) 109, 763
EarI CTCTTC 2 cut(s) 109, 763
EciI GGCGGA 1 cut(s) 150
EclXI CGGCCG 2 cut(s) 371, 530
Eco147I AGGCCT 1 cut(s) 610
Eco31I GGTCTC 1 cut(s) 758
Eco47I GGWCC 2 cut(s) 51, 184
Eco52I CGGCCG 2 cut(s) 371, 530
Eco57I CTGAAG 2 cut(s) 288, 654
EcoNI CCTNNNNNAGG 1 cut(s) 604
EcoRII CCWGG 2 cut(s) 39, 610
Esp3I CGTCTC 1 cut(s) 360
FaiI YATR 4 cut(s) 506, 716, 732, 748
FaqI GGGAC 1 cut(s) 508
FauI CCCGC 1 cut(s) 434
Fnu4HI GCNGC 3 cut(s) 164, 371, 374
Fsp4HI GCNGC 3 cut(s) 164, 371, 374
FspBI CTAG 2 cut(s) 62, 498
FspI TGCGCA 1 cut(s) 654
GlaI GCGC 2 cut(s) 654, 690
GluI GCNGC 3 cut(s) 164, 371, 374
GsuI CTGGAG 2 cut(s) 62, 633
HaeIII GGCC 5 cut(s) 5, 281, 373, 532, 610
HhaI GCGC 2 cut(s) 655, 691
Hin6I GCGC 2 cut(s) 653, 689
HinP1I GCGC 2 cut(s) 653, 689
HinfI GANTC 3 cut(s) 224, 230, 580
HphI GGTGA 1 cut(s) 102
Hpy188I TCNGA 7 cut(s) 55, 81, 175, 208, 229, 256, 604
Hpy188III TCNNGA 1 cut(s) 182
HpyAV CCTTC 4 cut(s) 21, 213, 629, 688
HpyCH4III ACNGT 1 cut(s) 354
HpyCH4V TGCA 3 cut(s) 332, 410, 734
HpyF10VI GCNNNNNNNGC 3 cut(s) 278, 329, 731
HpyF3I CTNAG 1 cut(s) 207
HspAI GCGC 2 cut(s) 653, 689
Kzo9I GATC 2 cut(s) 36, 81
LweI GCATC 1 cut(s) 694
MaeI CTAG 2 cut(s) 62, 498
MaeIII GTNAC 2 cut(s) 500, 559
MalI GATC 2 cut(s) 38, 83
MboI GATC 2 cut(s) 36, 81
MboII GAAGA 7 cut(s) 90, 96, 146, 147, 227, 523, 750
MflI RGATCY 2 cut(s) 36, 81
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 639
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 233
MmeI TCCRAC 2 cut(s) 59, 78
MnlI CCTC 9 cut(s) 24, 27, 41, 112, 270, 317, 322, 610, 657
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 317
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 2 cut(s) 41, 612
MvaI CCWGG 2 cut(s) 41, 612
MwoI GCNNNNNNNGC 3 cut(s) 278, 329, 731
NdeII GATC 2 cut(s) 36, 81
NlaIV GGNNCC 3 cut(s) 38, 52, 83
NmeAIII GCCGAG 1 cut(s) 220
NmuCI GTSAC 1 cut(s) 559
NotI GCGGCCGC 1 cut(s) 371
NsbI TGCGCA 1 cut(s) 654
PceI AGGCCT 1 cut(s) 610
PfeI GAWTC 2 cut(s) 230, 580
PfoI TCCNGGA 1 cut(s) 39
PkrI GCNGC 3 cut(s) 165, 372, 375
PleI GAGTC 1 cut(s) 232
PpsI GAGTC 1 cut(s) 232
Psp6I CCWGG 2 cut(s) 39, 610
PspGI CCWGG 2 cut(s) 39, 610
PspN4I GGNNCC 3 cut(s) 38, 52, 83
PspPI GGNCC 3 cut(s) 51, 184, 279
PsuI RGATCY 2 cut(s) 36, 81
RsaI GTAC 2 cut(s) 539, 699
RsaNI GTAC 2 cut(s) 538, 698
SaqAI TTAA 1 cut(s) 317
SatI GCNGC 3 cut(s) 164, 371, 374
Sau3AI GATC 2 cut(s) 36, 81
Sau96I GGNCC 3 cut(s) 51, 184, 279
SchI GAGTC 1 cut(s) 233
ScrFI CCNGG 2 cut(s) 41, 612
SetI ASST 4 cut(s) 67, 79, 325, 699
SfaNI GCATC 1 cut(s) 694
SfcI CTRYAG 1 cut(s) 669
SinI GGWCC 2 cut(s) 51, 184
SmlI CTYRAG 1 cut(s) 274
SmoI CTYRAG 1 cut(s) 274
SpeI ACTAGT 1 cut(s) 497
Sse9I AATT 1 cut(s) 639
SseBI AGGCCT 1 cut(s) 610
SsiI CCGC 6 cut(s) 58, 161, 164, 370, 374, 427
SspMI CTAG 2 cut(s) 62, 498
StuI AGGCCT 1 cut(s) 610
StyD4I CCNGG 2 cut(s) 39, 610
TaaI ACNGT 1 cut(s) 354
TasI AATT 1 cut(s) 639
TatI WGTACW 1 cut(s) 537
TauI GCSGC 3 cut(s) 166, 373, 376
TfiI GAWTC 2 cut(s) 230, 580
Tru1I TTAA 1 cut(s) 317
Tru9I TTAA 1 cut(s) 317
TscAI CASTG 3 cut(s) 271, 394, 406
TseFI GTSAC 1 cut(s) 559
Tsp45I GTSAC 1 cut(s) 559
TspDTI ATGAA 2 cut(s) 96, 461
TspRI CASTG 3 cut(s) 271, 394, 406
VpaK11BI GGWCC 2 cut(s) 51, 184
XagI CCTNNNNNAGG 1 cut(s) 604
XspI CTAG 2 cut(s) 62, 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.