Rroxscaffold_7G00162580

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0015876
Physical Location & Seq
Reverse (-)
5030829 .. 5038168
7340 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00162580.1

Sequence Viewer

Length: 759 bp
ATGGCCACAAACAGCAGAGAAGCCCGAAGGAGGAGGATCCTGGAGAGAGGGTCGGACCGCCTAGCTCTAATCACGGGTCGGATTCAAACACTACCATCTTCCTCTTCATCACCCGACCCACAAACCCAGTTTGAAGATACAACAAACCCATCTTCTCCGCCGCCAACTTCCGATGTTCAGGACCGAATCGCCGAGTTGCCTTCTGAGATTGAAGAAAACGAGTCTGATTCAACATTGCCAAGAAGCCAATCTGATACAAACACTGAAGCCTTGAGGGCCATTGATACCCAAGTCCAGCAACTCCTCTCCTCATTAACAGCTCAAAATGCACCACCACCATCATCGTCTGAAAATCAAAGGCGGCCGCTTTTCACTGCCAGTGGAGTGAGTAGTGCCATTGCAGAAACAGAAAGAACCCGCCTTTTGTTTTCGGTAGCAGTAGCAATGTTGGTGGTTTTAGTTCATCTGGGTTTTCCTTTGATGGGGACTAGTAACATAGTGAAGACCCTGTTGGGCTTTCGGCCGTTGTACTTGGTTTTGCTGACCAATGTGACATTTGTGCTGGCAAGGATTCTTGGTAAGCAGAGAGTCTCTGAAAGGCCTGGAGAGATTAGAACTTCAGCTGAAGGAATTGAGTGGGTTGCGCAGTTAGGGAGGGCTGTAGAGATAGGCCTGGTAGCGCAGAAGGTACTTGATGCTCTGTTTATGGATTGTGCTGTGTATGCAATAATAGTTGTATGTGGTCTCTCTTCTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

252

Amino Acids

27.33

Weight (kDa)

5.38

Isoelectric Point (pI)

57.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015876)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32680
fragaria_vesca FvH4_2g36330
malus_domestica MD15G1099900.v1.1
prunus_persica Prupe.1G454700_v2.0.a1
pyrus_communis pycom08g10100 pycom15g09190
rosa_chinensis RchiOBHm_Chr6g0305551
rosa_multiflora Rmu_sc0000841.1_g000003 Rmu_sc0001153.1_g000006
rosa_roxburghii Rroxscaffold_7G00162580
rosa_rugosa Rorug06G0341600
rosa_samantha Rh6AG453600 Rh6BG448000 Rh6CG467400
rosa_wichuraiana Rw6G039530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 645
AciI CCGC 6 cut(s) 58, 158, 161, 361, 365, 418
AclWI GGATC 2 cut(s) 31, 44
AcoI YGGCCR 3 cut(s) 3, 362, 521
AcuI CTGAAG 3 cut(s) 285, 603, 645
AfaI GTAC 2 cut(s) 530, 690
AfiI CCNNNNNNNGG 2 cut(s) 30, 482
AgsI TTSAA 4 cut(s) 86, 134, 212, 231
AhlI ACTAGT 1 cut(s) 488
AjnI CCWGG 3 cut(s) 39, 601, 672
AjuI GAANNNNNNNTTGG 2 cut(s) 494, 526
AluBI AGCT 3 cut(s) 65, 320, 623
AluI AGCT 3 cut(s) 65, 320, 623
Alw26I GTCTC 2 cut(s) 595, 749
AlwI GGATC 2 cut(s) 31, 44
AoxI GGCC 6 cut(s) 3, 276, 362, 521, 599, 670
AspLEI GCGC 2 cut(s) 646, 682
AspS9I GGNCC 3 cut(s) 55, 181, 276
AsuHPI GGTGA 1 cut(s) 102
AvaII GGWCC 2 cut(s) 55, 181
BaeI ACNNNNGTAYC 2 cut(s) 276, 309
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 36
BbsI GAAGAC 1 cut(s) 509
BccI CCATC 4 cut(s) 103, 157, 346, 475
BceAI ACGGC 1 cut(s) 508
BciT130I CCWGG 3 cut(s) 41, 603, 674
BcoDI GTCTC 2 cut(s) 595, 749
BcuI ACTAGT 1 cut(s) 488
BfaI CTAG 2 cut(s) 62, 489
BfmI CTRYAG 1 cut(s) 660
BglI GCCNNNNNGGC 1 cut(s) 275
BisI GCNGC 3 cut(s) 161, 362, 365
BlsI GCNGC 3 cut(s) 162, 363, 366
Bme1390I CCNGG 3 cut(s) 41, 603, 674
Bme18I GGWCC 2 cut(s) 55, 181
BmgT120I GGNCC 3 cut(s) 55, 181, 276
BmiI GGNNCC 1 cut(s) 38
BmrFI CCNGG 3 cut(s) 41, 603, 674
BmrI ACTGGG 1 cut(s) 121
BmsI GCATC 1 cut(s) 685
BmuI ACTGGG 1 cut(s) 121
BpiI GAAGAC 1 cut(s) 509
BpmI CTGGAG 2 cut(s) 62, 624
BpuEI CTTGAG 1 cut(s) 292
BsaI GGTCTC 1 cut(s) 749
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bsc4I CCNNNNNNNGG 2 cut(s) 30, 482
Bse1I ACTGG 2 cut(s) 127, 378
Bse3DI GCAATG 3 cut(s) 233, 396, 450
BseBI CCWGG 3 cut(s) 41, 603, 674
BseLI CCNNNNNNNGG 2 cut(s) 30, 482
BseMI GCAATG 3 cut(s) 233, 396, 450
BseMII CTCAG 1 cut(s) 195
BseNI ACTGG 2 cut(s) 127, 378
BseRI GAGGAG 3 cut(s) 46, 293, 298
BseX3I CGGCCG 2 cut(s) 362, 521
Bsh1285I CGRYCG 2 cut(s) 365, 524
BshFI GGCC 6 cut(s) 5, 278, 364, 523, 601, 672
BsiEI CGRYCG 2 cut(s) 365, 524
BslFI GGGAC 1 cut(s) 499
BslI CCNNNNNNNGG 2 cut(s) 30, 482
BsmAI GTCTC 2 cut(s) 595, 749
BsmFI GGGAC 1 cut(s) 499
BsnI GGCC 6 cut(s) 5, 278, 364, 523, 601, 672
Bso31I GGTCTC 1 cut(s) 749
Bsp143I GATC 1 cut(s) 36
BspACI CCGC 6 cut(s) 58, 158, 161, 361, 365, 418
BspANI GGCC 6 cut(s) 5, 278, 364, 523, 601, 672
BspCNI CTCAG 1 cut(s) 196
BspLI GGNNCC 1 cut(s) 38
BspPI GGATC 2 cut(s) 31, 44
BspTNI GGTCTC 1 cut(s) 749
BsrDI GCAATG 3 cut(s) 233, 396, 450
BsrI ACTGG 2 cut(s) 127, 378
BssMI GATC 1 cut(s) 36
Bst2UI CCWGG 3 cut(s) 41, 603, 674
Bst6I CTCTTC 2 cut(s) 109, 754
BstC8I GCNNGC 1 cut(s) 564
BstDEI CTNAG 1 cut(s) 204
BstHHI GCGC 2 cut(s) 646, 682
BstKTI GATC 1 cut(s) 39
BstMAI GTCTC 2 cut(s) 595, 749
BstMBI GATC 1 cut(s) 36
BstMCI CGRYCG 2 cut(s) 365, 524
BstMWI GCNNNNNNNGC 3 cut(s) 275, 326, 722
BstNI CCWGG 3 cut(s) 41, 603, 674
BstSCI CCNGG 3 cut(s) 39, 601, 672
BstSFI CTRYAG 1 cut(s) 660
BstV2I GAAGAC 1 cut(s) 509
BstX2I RGATCY 1 cut(s) 36
BstYI RGATCY 1 cut(s) 36
BstZI CGGCCG 2 cut(s) 362, 521
BsuRI GGCC 6 cut(s) 5, 278, 364, 523, 601, 672
BtsI GCAGTG 1 cut(s) 372
BtsIMutI CAGTG 3 cut(s) 261, 372, 385
Cac8I GCNNGC 1 cut(s) 564
CciNI GCGGCCGC 1 cut(s) 362
CfoI GCGC 2 cut(s) 646, 682
Cfr13I GGNCC 3 cut(s) 55, 181, 276
CpoI CGGWCCG 1 cut(s) 55
Csp6I GTAC 2 cut(s) 529, 689
CspCI CAANNNNNGTGG 2 cut(s) 432, 467
CspI CGGWCCG 1 cut(s) 55
CviQI GTAC 2 cut(s) 529, 689
DdeI CTNAG 1 cut(s) 204
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
EaeI YGGCCR 3 cut(s) 3, 362, 521
EagI CGGCCG 2 cut(s) 362, 521
Eam1104I CTCTTC 2 cut(s) 109, 754
EarI CTCTTC 2 cut(s) 109, 754
EciI GGCGGA 1 cut(s) 147
EclXI CGGCCG 2 cut(s) 362, 521
Eco147I AGGCCT 2 cut(s) 601, 672
Eco31I GGTCTC 1 cut(s) 749
Eco47I GGWCC 2 cut(s) 55, 181
Eco52I CGGCCG 2 cut(s) 362, 521
Eco57I CTGAAG 3 cut(s) 285, 603, 645
EcoRII CCWGG 3 cut(s) 39, 601, 672
FaiI YATR 5 cut(s) 497, 707, 723, 739, 757
FaqI GGGAC 1 cut(s) 499
FauI CCCGC 1 cut(s) 425
Fnu4HI GCNGC 3 cut(s) 161, 362, 365
Fsp4HI GCNGC 3 cut(s) 161, 362, 365
FspBI CTAG 2 cut(s) 62, 489
FspI TGCGCA 1 cut(s) 645
GlaI GCGC 2 cut(s) 645, 681
GluI GCNGC 3 cut(s) 161, 362, 365
GsuI CTGGAG 2 cut(s) 62, 624
HaeIII GGCC 6 cut(s) 5, 278, 364, 523, 601, 672
HhaI GCGC 2 cut(s) 646, 682
Hin6I GCGC 2 cut(s) 644, 680
HinP1I GCGC 2 cut(s) 644, 680
HinfI GANTC 6 cut(s) 82, 186, 221, 227, 571, 588
HphI GGTGA 1 cut(s) 102
Hpy188I TCNGA 8 cut(s) 55, 81, 172, 205, 226, 253, 349, 595
Hpy188III TCNNGA 1 cut(s) 179
HpyAV CCTTC 4 cut(s) 21, 210, 620, 679
HpyCH4V TGCA 4 cut(s) 329, 401, 725, 755
HpyF10VI GCNNNNNNNGC 3 cut(s) 275, 326, 722
HpyF3I CTNAG 1 cut(s) 204
HspAI GCGC 2 cut(s) 644, 680
Kzo9I GATC 1 cut(s) 36
LweI GCATC 1 cut(s) 685
MaeI CTAG 2 cut(s) 62, 489
MaeIII GTNAC 2 cut(s) 491, 550
MalI GATC 1 cut(s) 38
MboI GATC 1 cut(s) 36
MboII GAAGA 7 cut(s) 90, 96, 144, 146, 224, 514, 741
MflI RGATCY 1 cut(s) 36
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 630
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 230, 597
MmeI TCCRAC 2 cut(s) 33, 59
MnlI CCTC 8 cut(s) 24, 27, 41, 112, 267, 314, 319, 648
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 314
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 623
MspR9I CCNGG 3 cut(s) 41, 603, 674
MvaI CCWGG 3 cut(s) 41, 603, 674
MwoI GCNNNNNNNGC 3 cut(s) 275, 326, 722
NdeII GATC 1 cut(s) 36
NlaIV GGNNCC 1 cut(s) 38
NmeAIII GCCGAG 1 cut(s) 217
NmuCI GTSAC 1 cut(s) 550
NotI GCGGCCGC 1 cut(s) 362
NsbI TGCGCA 1 cut(s) 645
PceI AGGCCT 2 cut(s) 601, 672
PfeI GAWTC 4 cut(s) 82, 186, 227, 571
PfoI TCCNGGA 1 cut(s) 39
PkrI GCNGC 3 cut(s) 162, 363, 366
PleI GAGTC 2 cut(s) 229, 596
PpsI GAGTC 2 cut(s) 229, 596
Psp6I CCWGG 3 cut(s) 39, 601, 672
PspGI CCWGG 3 cut(s) 39, 601, 672
PspN4I GGNNCC 1 cut(s) 38
PspPI GGNCC 3 cut(s) 55, 181, 276
PsuI RGATCY 1 cut(s) 36
PvuII CAGCTG 1 cut(s) 623
RsaI GTAC 2 cut(s) 530, 690
RsaNI GTAC 2 cut(s) 529, 689
Rsr2I CGGWCCG 1 cut(s) 55
RsrII CGGWCCG 1 cut(s) 55
SaqAI TTAA 1 cut(s) 314
SatI GCNGC 3 cut(s) 161, 362, 365
Sau3AI GATC 1 cut(s) 36
Sau96I GGNCC 3 cut(s) 55, 181, 276
SchI GAGTC 2 cut(s) 230, 597
ScrFI CCNGG 3 cut(s) 41, 603, 674
SetI ASST 4 cut(s) 67, 322, 625, 690
SfaNI GCATC 1 cut(s) 685
SfcI CTRYAG 1 cut(s) 660
SinI GGWCC 2 cut(s) 55, 181
SmlI CTYRAG 1 cut(s) 271
SmoI CTYRAG 1 cut(s) 271
SpeI ACTAGT 1 cut(s) 488
Sse9I AATT 1 cut(s) 630
SseBI AGGCCT 2 cut(s) 601, 672
SsiI CCGC 6 cut(s) 58, 158, 161, 361, 365, 418
SspMI CTAG 2 cut(s) 62, 489
StuI AGGCCT 2 cut(s) 601, 672
StyD4I CCNGG 3 cut(s) 39, 601, 672
TaqII GACCGA 1 cut(s) 198
TasI AATT 1 cut(s) 630
TatI WGTACW 1 cut(s) 528
TauI GCSGC 3 cut(s) 163, 364, 367
TfiI GAWTC 4 cut(s) 82, 186, 227, 571
Tru1I TTAA 1 cut(s) 314
Tru9I TTAA 1 cut(s) 314
TscAI CASTG 3 cut(s) 268, 379, 385
TseFI GTSAC 1 cut(s) 550
Tsp45I GTSAC 1 cut(s) 550
TspDTI ATGAA 2 cut(s) 96, 452
TspRI CASTG 3 cut(s) 268, 379, 385
VpaK11BI GGWCC 2 cut(s) 55, 181
XspI CTAG 2 cut(s) 62, 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.