Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0009075

Physical Location & Seq

Genomic Coordinates Forward (+)

27402575 .. 27404087

Gene Structure 1513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g37750.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGAAGAGAACGAGGCGAACGCAACAGTAACAAACCCAAAGACGACGCAAGAGCTAGCAGTGGAAGGCCAGAAGCATCTAGAAGAGACGATACAGTCAGCTTTCCAGATCCTCTCCTCCATGAACGACGAGCTCTGTAACCCGCTTCTCTGGCCCACCGATTCCTCCGCCGCCGGGAACGGACATTCTTCTCTCCCAAACGGCGTCGTCGTTCATAGCGATTCGTCATCTTCTGAGAACACCAACACCCAAAATCACGGAGACTCTAGCGGAGCTGGCGGAGCCCTTGAGGAGGCTCGGTTTCGGTACAAGAACTCCGTGACGGCTCTCCGGGCTGTTCTGGCTGCCATTCCTGATTCTCACAAGGAAAAATCTGAAACTTGTTCGCCTGCAGACGAAACTGAAGTTGAGAAGTTGGAAGAGCAAGCCTCCAATTTGAGAAAGGAGCTTGTGAAGAAAAATGCATATATCAAGGTTCTTATAGATCAGCTACGAGATCTTATCACCGACATATCAACCTGGCAAAGTCCTTGTTCCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

181

Amino Acids

19.53

Weight (kDa)

4.72

Isoelectric Point (pI)

41.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63480 AT5G63480
fragaria_vesca	FvH4_1g29942 FvH4_2g37750
malus_domestica	MD08G1006700.v1.1 MD15G1005900.v1.1
prunus_persica	Prupe.1G358600_v2.0.a1
pyrus_communis	pycom08g00520 pycom15g00450
rosa_chinensis	RchiOBHm_Chr6g0303761
rosa_laevigata	RLG00000011047 RLG00000027493
rosa_multiflora	Rmu_sc0014011.1_g000001
rosa_rugosa	Rorug02G0181300 Rorug04G0014400 Rorug05G0039400 Rorug06G0324600
rosa_samantha	Rh6AG438900 Rh6BG464100 Rh6CG451200 Rh6DG438100
rosa_wichuraiana	Rw6G038000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	94
AciI	CCGC	5 cut(s)	143, 168, 171, 270, 279
AclWI	GGATC	1 cut(s)	103
AcuI	CTGAAG	1 cut(s)	423
AcyI	GRCGYC	1 cut(s)	204
AfaI	GTAC	1 cut(s)	308
AfiI	CCNNNNNNNGG	2 cut(s)	174, 292
AjnI	CCWGG	1 cut(s)	518
AluBI	AGCT	6 cut(s)	55, 101, 133, 275, 448, 490
AluI	AGCT	6 cut(s)	55, 101, 133, 275, 448, 490
Alw21I	GWGCWC	1 cut(s)	135
Alw26I	GTCTC	2 cut(s)	80, 255
AlwI	GGATC	1 cut(s)	103
AoxI	GGCC	2 cut(s)	67, 152
ApeKI	GCWGC	1 cut(s)	344
AspS9I	GGNCC	1 cut(s)	153
AsuC2I	CCSGG	2 cut(s)	175, 332
AsuHPI	GGTGA	1 cut(s)	496
AsuNHI	GCTAGC	1 cut(s)	55
BanII	GRGCYC	2 cut(s)	135, 286
BarI	GAAGNNNNNNTAC	2 cut(s)	75, 107
Bbv12I	GWGCWC	1 cut(s)	135
BbvI	GCAGC	1 cut(s)	331
BceAI	ACGGC	2 cut(s)	217, 339
BciT130I	CCWGG	1 cut(s)	520
BcnI	CCSGG	2 cut(s)	175, 332
BcoDI	GTCTC	2 cut(s)	80, 255
BfaI	CTAG	3 cut(s)	56, 80, 267
BfmI	CTRYAG	1 cut(s)	390
BglII	AGATCT	1 cut(s)	496
BisI	GCNGC	2 cut(s)	171, 345
BlsI	GCNGC	2 cut(s)	172, 346
Bme1390I	CCNGG	3 cut(s)	175, 332, 520
BmgT120I	GGNCC	1 cut(s)	153
BmiI	GGNNCC	1 cut(s)	283
BmrFI	CCNGG	3 cut(s)	175, 332, 520
BmsI	GCATC	1 cut(s)	85
BmtI	GCTAGC	1 cut(s)	59
BplI	GAGNNNNNCTC	2 cut(s)	413, 445
BpuEI	CTTGAG	1 cut(s)	308
BpuMI	CCSGG	2 cut(s)	175, 332
BsaHI	GRCGYC	1 cut(s)	204
BsaXI	ACNNNNNCTCC	4 cut(s)	284, 299, 314, 329
Bsc4I	CCNNNNNNNGG	2 cut(s)	174, 292
BseBI	CCWGG	1 cut(s)	520
BseLI	CCNNNNNNNGG	2 cut(s)	174, 292
BseMII	CTCAG	1 cut(s)	225
BseRI	GAGGAG	2 cut(s)	106, 305
BseXI	GCAGC	1 cut(s)	331
BshFI	GGCC	2 cut(s)	69, 154
BsiHKAI	GWGCWC	1 cut(s)	135
BsiSI	CCGG	2 cut(s)	174, 331
BslI	CCNNNNNNNGG	2 cut(s)	174, 292
BsmAI	GTCTC	2 cut(s)	80, 255
BsmBI	CGTCTC	1 cut(s)	80
BsnI	GGCC	2 cut(s)	69, 154
Bsp1286I	GDGCHC	2 cut(s)	135, 286
Bsp143I	GATC	3 cut(s)	108, 484, 496
BspACI	CCGC	5 cut(s)	143, 168, 171, 270, 279
BspANI	GGCC	2 cut(s)	69, 154
BspCNI	CTCAG	1 cut(s)	226
BspLI	GGNNCC	1 cut(s)	283
BspMAI	CTGCAG	1 cut(s)	394
BspOI	GCTAGC	1 cut(s)	59
BspPI	GGATC	1 cut(s)	103
BspQI	GCTCTTC	1 cut(s)	414
BssMI	GATC	3 cut(s)	108, 484, 496
BssNI	GRCGYC	1 cut(s)	204
Bst2UI	CCWGG	1 cut(s)	520
Bst4CI	ACNGT	2 cut(s)	28, 96
Bst6I	CTCTTC	2 cut(s)	78, 414
BstACI	GRCGYC	1 cut(s)	204
BstC8I	GCNNGC	4 cut(s)	57, 277, 390, 426
BstDEI	CTNAG	1 cut(s)	234
BstENI	CCTNNNNNAGG	1 cut(s)	290
BstKTI	GATC	3 cut(s)	111, 487, 499
BstMAI	GTCTC	2 cut(s)	80, 255
BstMBI	GATC	3 cut(s)	108, 484, 496
BstMWI	GCNNNNNNNGC	5 cut(s)	151, 276, 281, 332, 341
BstNI	CCWGG	1 cut(s)	520
BstSCI	CCNGG	3 cut(s)	173, 330, 518
BstSFI	CTRYAG	1 cut(s)	390
BstV1I	GCAGC	1 cut(s)	331
BstX2I	RGATCY	2 cut(s)	108, 496
BstYI	RGATCY	2 cut(s)	108, 496
BsuRI	GGCC	2 cut(s)	69, 154
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	66
Cac8I	GCNNGC	4 cut(s)	57, 277, 390, 426
Cfr13I	GGNCC	1 cut(s)	153
CseI	GACGC	2 cut(s)	55, 193
Csp6I	GTAC	1 cut(s)	307
CviAII	CATG	1 cut(s)	121
CviQI	GTAC	1 cut(s)	307
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	3 cut(s)	110, 486, 498
DpnII	GATC	3 cut(s)	108, 484, 496
DrdI	GACNNNNNNGTC	1 cut(s)	94
DseDI	GACNNNNNNGTC	1 cut(s)	94
Eam1104I	CTCTTC	2 cut(s)	78, 414
EarI	CTCTTC	2 cut(s)	78, 414
EciI	GGCGGA	2 cut(s)	157, 294
Ecl136II	GAGCTC	1 cut(s)	133
Eco24I	GRGCYC	2 cut(s)	135, 286
Eco53kI	GAGCTC	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	423
EcoICRI	GAGCTC	1 cut(s)	133
EcoNI	CCTNNNNNAGG	1 cut(s)	290
EcoRII	CCWGG	1 cut(s)	518
EcoT22I	ATGCAT	1 cut(s)	466
EcoT38I	GRGCYC	2 cut(s)	135, 286
Esp3I	CGTCTC	1 cut(s)	80
FaeI	CATG	1 cut(s)	124
FaiI	YATR	6 cut(s)	122, 216, 466, 468, 482, 512
FatI	CATG	1 cut(s)	120
FauI	CCCGC	1 cut(s)	150
Fnu4HI	GCNGC	2 cut(s)	171, 345
FriOI	GRGCYC	2 cut(s)	135, 286
Fsp4HI	GCNGC	2 cut(s)	171, 345
FspBI	CTAG	3 cut(s)	56, 80, 267
GluI	GCNGC	2 cut(s)	171, 345
HaeIII	GGCC	2 cut(s)	69, 154
HapII	CCGG	2 cut(s)	174, 331
HgaI	GACGC	2 cut(s)	55, 193
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	1 cut(s)	124
HinfI	GANTC	4 cut(s)	161, 221, 263, 356
HpaII	CCGG	2 cut(s)	174, 331
HphI	GGTGA	1 cut(s)	496
Hpy188I	TCNGA	3 cut(s)	235, 376, 542
Hpy188III	TCNNGA	3 cut(s)	80, 106, 353
Hpy99I	CGWCG	4 cut(s)	49, 131, 209, 212
HpyAV	CCTTC	1 cut(s)	59
HpyCH4III	ACNGT	2 cut(s)	28, 96
HpyCH4V	TGCA	2 cut(s)	392, 464
HpyF10VI	GCNNNNNNNGC	5 cut(s)	151, 276, 281, 332, 341
HpyF3I	CTNAG	1 cut(s)	234
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	1 cut(s)	124
Kzo9I	GATC	3 cut(s)	108, 484, 496
LguI	GCTCTTC	1 cut(s)	414
LmnI	GCTCC	3 cut(s)	272, 281, 445
Lsp1109I	GCAGC	1 cut(s)	331
LweI	GCATC	1 cut(s)	85
MaeI	CTAG	3 cut(s)	56, 80, 267
MaeIII	GTNAC	3 cut(s)	28, 137, 319
MalI	GATC	3 cut(s)	110, 486, 498
MboI	GATC	3 cut(s)	108, 484, 496
MboII	GAAGA	6 cut(s)	17, 95, 180, 222, 431, 466
MflI	RGATCY	2 cut(s)	108, 496
MhlI	GDGCHC	2 cut(s)	135, 286
MluCI	AATT	1 cut(s)	433
MlyI	GAGTC	1 cut(s)	257
MmeI	TCCRAC	1 cut(s)	396
MnlI	CCTC	7 cut(s)	7, 122, 127, 175, 283, 286, 439
Mph1103I	ATGCAT	1 cut(s)	466
MspI	CCGG	2 cut(s)	174, 331
MspR9I	CCNGG	3 cut(s)	175, 332, 520
MvaI	CCWGG	1 cut(s)	520
MwoI	GCNNNNNNNGC	5 cut(s)	151, 276, 281, 332, 341
NciI	CCSGG	2 cut(s)	175, 332
NdeII	GATC	3 cut(s)	108, 484, 496
NheI	GCTAGC	1 cut(s)	55
NlaIII	CATG	1 cut(s)	124
NlaIV	GGNNCC	1 cut(s)	283
NmuCI	GTSAC	1 cut(s)	319
NsiI	ATGCAT	1 cut(s)	466
PciSI	GCTCTTC	1 cut(s)	414
PcsI	WCGNNNNNNNCGW	2 cut(s)	207, 216
PfeI	GAWTC	3 cut(s)	161, 221, 356
PkrI	GCNGC	2 cut(s)	172, 346
PleI	GAGTC	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	257
Psp124BI	GAGCTC	1 cut(s)	135
Psp6I	CCWGG	1 cut(s)	518
PspGI	CCWGG	1 cut(s)	518
PspN4I	GGNNCC	1 cut(s)	283
PspPI	GGNCC	1 cut(s)	153
PstI	CTGCAG	1 cut(s)	394
PsuI	RGATCY	2 cut(s)	108, 496
RsaI	GTAC	1 cut(s)	308
RsaNI	GTAC	1 cut(s)	307
SacI	GAGCTC	1 cut(s)	135
SapI	GCTCTTC	1 cut(s)	414
SatI	GCNGC	2 cut(s)	171, 345
Sau3AI	GATC	3 cut(s)	108, 484, 496
Sau96I	GGNCC	1 cut(s)	153
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	3 cut(s)	175, 332, 520
SduI	GDGCHC	2 cut(s)	135, 286
SetI	ASST	8 cut(s)	57, 103, 135, 277, 450, 477, 492, 521
SfaNI	GCATC	1 cut(s)	85
SfcI	CTRYAG	1 cut(s)	390
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	1 cut(s)	433
SsiI	CCGC	5 cut(s)	143, 168, 171, 270, 279
SspMI	CTAG	3 cut(s)	56, 80, 267
SstI	GAGCTC	1 cut(s)	135
StyD4I	CCNGG	3 cut(s)	173, 330, 518
TaaI	ACNGT	2 cut(s)	28, 96
TasI	AATT	1 cut(s)	433
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	3 cut(s)	161, 221, 356
TscAI	CASTG	1 cut(s)	66
TseFI	GTSAC	1 cut(s)	319
TseI	GCWGC	1 cut(s)	344
Tsp45I	GTSAC	1 cut(s)	319
TspDTI	ATGAA	2 cut(s)	137, 203
TspGWI	ACGGA	4 cut(s)	195, 273, 307, 526
TspRI	CASTG	1 cut(s)	66
XagI	CCTNNNNNAGG	1 cut(s)	290
XbaI	TCTAGA	1 cut(s)	79
XspI	CTAG	3 cut(s)	56, 80, 267
Zsp2I	ATGCAT	1 cut(s)	466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.