Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0009075

Physical Location & Seq

Genomic Coordinates Reverse (-)

6327607 .. 6328936

Gene Structure 1330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011047

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGAAGAGAATGAGGCGAATGCATCACCATCAAACCCTAAGACGACGCAAGAGCTAGCAGTTGAAGGCCAGAAGCATCTAGAAGAGACGATAGAGTCAGCTTTCCAGATCCTCTCCTCCATGAACGACGAGCTCTGCAACCCCCTACTCTGGTCCACCAATTCCCCTGCCGCCGCCGCCGCCGCCGCTACCACCGCAAACGGACATTCTTCACTCTCAAACGGCGTGGTTCATAGCGATTCGTCTTCTTCTGACAACACAAATACCCAAAATCACGGAGACTCGAGCGGCGGCGGCGGCGGTCCTGGTAATGGCGGAGCTCTTGAGGAGGCTCGGTTTCGGTATAAGAACTCCGTGACGGCGCTCCGGGCTGTTCTGGCTGAAATTCCTAATTCTCAGAAGGCAACATCTGAAACTGGTTCCCCTGCGGATGAAACTGAAATTGAGAAGTTAGAGGAGAAAGCCTCCAATTTGAGAAAGGAGCTTGTGAAGAAAAATGCATATATCAAGGTTCTTATAGATCAGCTACGAGATCTTGTCACAGACATATCAACCTGGCAGAGTCCTTGTTCCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

193

Amino Acids

20.29

Weight (kDa)

4.71

Isoelectric Point (pI)

47.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63480 AT5G63480
fragaria_vesca	FvH4_1g29942 FvH4_2g37750
malus_domestica	MD08G1006700.v1.1 MD15G1005900.v1.1
prunus_persica	Prupe.1G358600_v2.0.a1
pyrus_communis	pycom08g00520 pycom15g00450
rosa_chinensis	RchiOBHm_Chr6g0303761
rosa_laevigata	RLG00000011047 RLG00000027493
rosa_multiflora	Rmu_sc0014011.1_g000001
rosa_rugosa	Rorug02G0181300 Rorug04G0014400 Rorug05G0039400 Rorug06G0324600
rosa_samantha	Rh6AG438900 Rh6BG464100 Rh6CG451200 Rh6DG438100
rosa_wichuraiana	Rw6G038000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	94
AccBSI	CCGCTC	1 cut(s)	288
AclWI	GGATC	1 cut(s)	103
AcsI	RAATTY	1 cut(s)	384
AfiI	CCNNNNNNNGG	2 cut(s)	150, 311
AgsI	TTSAA	1 cut(s)	65
AjnI	CCWGG	2 cut(s)	304, 554
AluBI	AGCT	6 cut(s)	55, 101, 133, 320, 484, 526
AluI	AGCT	6 cut(s)	55, 101, 133, 320, 484, 526
Alw21I	GWGCWC	2 cut(s)	135, 322
Alw26I	GTCTC	2 cut(s)	80, 273
AlwI	GGATC	1 cut(s)	103
Ama87I	CYCGRG	1 cut(s)	283
AoxI	GGCC	1 cut(s)	67
ApoI	RAATTY	1 cut(s)	384
AspLEI	GCGC	1 cut(s)	364
AspS9I	GGNCC	2 cut(s)	153, 302
AsuC2I	CCSGG	1 cut(s)	368
AsuHPI	GGTGA	1 cut(s)	18
AsuNHI	GCTAGC	1 cut(s)	55
AvaI	CYCGRG	1 cut(s)	283
AvaII	GGWCC	2 cut(s)	153, 302
BanII	GRGCYC	2 cut(s)	135, 322
BbsI	GAAGAC	1 cut(s)	237
Bbv12I	GWGCWC	2 cut(s)	135, 322
BccI	CCATC	1 cut(s)	37
BceAI	ACGGC	2 cut(s)	238, 375
BciT130I	CCWGG	2 cut(s)	306, 556
BcnI	CCSGG	1 cut(s)	368
BcoDI	GTCTC	2 cut(s)	80, 273
BfaI	CTAG	2 cut(s)	56, 80
BfoI	RGCGCY	1 cut(s)	365
BglII	AGATCT	1 cut(s)	532
Bme1390I	CCNGG	3 cut(s)	306, 368, 556
Bme18I	GGWCC	2 cut(s)	153, 302
BmeT110I	CYCGRG	1 cut(s)	283
BmgT120I	GGNCC	2 cut(s)	153, 302
BmiI	GGNNCC	1 cut(s)	421
BmrFI	CCNGG	3 cut(s)	306, 368, 556
BmsI	GCATC	2 cut(s)	32, 85
BmtI	GCTAGC	1 cut(s)	59
BpiI	GAAGAC	1 cut(s)	237
BplI	GAGNNNNNCTC	2 cut(s)	449, 481
BpuEI	CTTGAG	1 cut(s)	344
BpuMI	CCSGG	1 cut(s)	368
BsaXI	ACNNNNNCTCC	2 cut(s)	320, 350
Bsc4I	CCNNNNNNNGG	2 cut(s)	150, 311
Bse1I	ACTGG	1 cut(s)	421
BseBI	CCWGG	2 cut(s)	306, 556
BseGI	GGATG	1 cut(s)	436
BseLI	CCNNNNNNNGG	2 cut(s)	150, 311
BseMII	CTCAG	1 cut(s)	410
BseNI	ACTGG	1 cut(s)	421
BseRI	GAGGAG	3 cut(s)	106, 341, 470
BshFI	GGCC	1 cut(s)	69
BsiHKAI	GWGCWC	2 cut(s)	135, 322
BsiHKCI	CYCGRG	1 cut(s)	283
BsiSI	CCGG	1 cut(s)	367
BslI	CCNNNNNNNGG	2 cut(s)	150, 311
BsmAI	GTCTC	2 cut(s)	80, 273
BsmBI	CGTCTC	1 cut(s)	80
BsmI	GAATGC	1 cut(s)	25
BsnI	GGCC	1 cut(s)	69
BsoBI	CYCGRG	1 cut(s)	283
Bsp1286I	GDGCHC	2 cut(s)	135, 322
Bsp143I	GATC	3 cut(s)	108, 520, 532
BspANI	GGCC	1 cut(s)	69
BspCNI	CTCAG	1 cut(s)	409
BspLI	GGNNCC	1 cut(s)	421
BspOI	GCTAGC	1 cut(s)	59
BspPI	GGATC	1 cut(s)	103
BsrBI	CCGCTC	1 cut(s)	288
BsrI	ACTGG	1 cut(s)	421
BssMI	GATC	3 cut(s)	108, 520, 532
Bst2UI	CCWGG	2 cut(s)	306, 556
Bst6I	CTCTTC	1 cut(s)	78
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	2 cut(s)	39, 396
BstF5I	GGATG	1 cut(s)	436
BstH2I	RGCGCY	1 cut(s)	365
BstHHI	GCGC	1 cut(s)	364
BstKTI	GATC	3 cut(s)	111, 523, 535
BstMAI	GTCTC	2 cut(s)	80, 273
BstMBI	GATC	3 cut(s)	108, 520, 532
BstMWI	GCNNNNNNNGC	9 cut(s)	176, 179, 182, 185, 194, 294, 297, 368, 377
BstNI	CCWGG	2 cut(s)	306, 556
BstSCI	CCNGG	3 cut(s)	304, 366, 554
BstV2I	GAAGAC	1 cut(s)	237
BstX2I	RGATCY	2 cut(s)	108, 532
BstYI	RGATCY	2 cut(s)	108, 532
BsuRI	GGCC	1 cut(s)	69
BtsCI	GGATG	1 cut(s)	436
Cac8I	GCNNGC	1 cut(s)	57
CfoI	GCGC	1 cut(s)	364
Cfr13I	GGNCC	2 cut(s)	153, 302
CseI	GACGC	1 cut(s)	55
CspCI	CAANNNNNGTGG	2 cut(s)	207, 242
CviAII	CATG	1 cut(s)	121
DdeI	CTNAG	2 cut(s)	39, 396
DpnI	GATC	3 cut(s)	110, 522, 534
DpnII	GATC	3 cut(s)	108, 520, 532
DrdI	GACNNNNNNGTC	1 cut(s)	94
DseDI	GACNNNNNNGTC	1 cut(s)	94
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
EciI	GGCGGA	1 cut(s)	330
Ecl136II	GAGCTC	2 cut(s)	133, 320
Eco24I	GRGCYC	2 cut(s)	135, 322
Eco47I	GGWCC	2 cut(s)	153, 302
Eco53kI	GAGCTC	2 cut(s)	133, 320
Eco88I	CYCGRG	1 cut(s)	283
EcoICRI	GAGCTC	2 cut(s)	133, 320
EcoRII	CCWGG	2 cut(s)	304, 554
EcoT22I	ATGCAT	2 cut(s)	25, 502
EcoT38I	GRGCYC	2 cut(s)	135, 322
Esp3I	CGTCTC	1 cut(s)	80
FaeI	CATG	1 cut(s)	124
FaiI	YATR	7 cut(s)	122, 234, 345, 502, 504, 518, 548
FatI	CATG	1 cut(s)	120
FokI	GGATG	1 cut(s)	443
FriOI	GRGCYC	2 cut(s)	135, 322
FspBI	CTAG	2 cut(s)	56, 80
GlaI	GCGC	1 cut(s)	363
HaeII	RGCGCY	1 cut(s)	365
HaeIII	GGCC	1 cut(s)	69
HapII	CCGG	1 cut(s)	367
HgaI	GACGC	1 cut(s)	55
HhaI	GCGC	1 cut(s)	364
Hin1II	CATG	1 cut(s)	124
Hin6I	GCGC	1 cut(s)	362
HinP1I	GCGC	1 cut(s)	362
HinfI	GANTC	4 cut(s)	95, 239, 281, 562
HpaII	CCGG	1 cut(s)	367
HphI	GGTGA	1 cut(s)	18
Hpy166II	GTNNAC	1 cut(s)	156
Hpy188I	TCNGA	3 cut(s)	253, 399, 412
Hpy188III	TCNNGA	3 cut(s)	80, 106, 323
Hpy8I	GTNNAC	1 cut(s)	156
Hpy99I	CGWCG	2 cut(s)	49, 131
HpyAV	CCTTC	2 cut(s)	59, 394
HpyCH4V	TGCA	3 cut(s)	23, 138, 500
HpyF10VI	GCNNNNNNNGC	9 cut(s)	176, 179, 182, 185, 194, 294, 297, 368, 377
HpyF3I	CTNAG	2 cut(s)	39, 396
Hsp92II	CATG	1 cut(s)	124
HspAI	GCGC	1 cut(s)	362
Kzo9I	GATC	3 cut(s)	108, 520, 532
LmnI	GCTCC	3 cut(s)	317, 369, 481
LweI	GCATC	2 cut(s)	32, 85
MaeI	CTAG	2 cut(s)	56, 80
MaeIII	GTNAC	2 cut(s)	355, 538
MalI	GATC	3 cut(s)	110, 522, 534
MbiI	CCGCTC	1 cut(s)	288
MboI	GATC	3 cut(s)	108, 520, 532
MboII	GAAGA	6 cut(s)	17, 95, 201, 237, 240, 502
MflI	RGATCY	2 cut(s)	108, 532
MhlI	GDGCHC	2 cut(s)	135, 322
MluCI	AATT	5 cut(s)	160, 384, 391, 441, 469
MlyI	GAGTC	3 cut(s)	104, 275, 571
MnlI	CCTC	7 cut(s)	7, 122, 127, 319, 322, 448, 475
Mph1103I	ATGCAT	2 cut(s)	25, 502
MspI	CCGG	1 cut(s)	367
MspR9I	CCNGG	3 cut(s)	306, 368, 556
Mva1269I	GAATGC	1 cut(s)	25
MvaI	CCWGG	2 cut(s)	306, 556
MwoI	GCNNNNNNNGC	9 cut(s)	176, 179, 182, 185, 194, 294, 297, 368, 377
NciI	CCSGG	1 cut(s)	368
NdeII	GATC	3 cut(s)	108, 520, 532
NheI	GCTAGC	1 cut(s)	55
NlaIII	CATG	1 cut(s)	124
NlaIV	GGNNCC	1 cut(s)	421
NmuCI	GTSAC	2 cut(s)	355, 538
NsiI	ATGCAT	2 cut(s)	25, 502
PaeR7I	CTCGAG	1 cut(s)	283
PctI	GAATGC	1 cut(s)	25
PfeI	GAWTC	1 cut(s)	239
PleI	GAGTC	3 cut(s)	103, 275, 570
PpsI	GAGTC	3 cut(s)	103, 275, 570
Psp124BI	GAGCTC	2 cut(s)	135, 322
Psp6I	CCWGG	2 cut(s)	304, 554
PspGI	CCWGG	2 cut(s)	304, 554
PspN4I	GGNNCC	1 cut(s)	421
PspPI	GGNCC	2 cut(s)	153, 302
PspXI	VCTCGAGB	1 cut(s)	283
PsuI	RGATCY	2 cut(s)	108, 532
SacI	GAGCTC	2 cut(s)	135, 322
Sau3AI	GATC	3 cut(s)	108, 520, 532
Sau96I	GGNCC	2 cut(s)	153, 302
SchI	GAGTC	3 cut(s)	104, 275, 571
ScrFI	CCNGG	3 cut(s)	306, 368, 556
SduI	GDGCHC	2 cut(s)	135, 322
SetI	ASST	8 cut(s)	57, 103, 135, 322, 486, 513, 528, 557
SfaNI	GCATC	2 cut(s)	32, 85
Sfr274I	CTCGAG	1 cut(s)	283
SinI	GGWCC	2 cut(s)	153, 302
SlaI	CTCGAG	1 cut(s)	283
SmlI	CTYRAG	2 cut(s)	283, 323
SmoI	CTYRAG	2 cut(s)	283, 323
Sse9I	AATT	5 cut(s)	160, 384, 391, 441, 469
SspMI	CTAG	2 cut(s)	56, 80
SstI	GAGCTC	2 cut(s)	135, 322
StyD4I	CCNGG	3 cut(s)	304, 366, 554
TaqI	TCGA	1 cut(s)	284
TasI	AATT	5 cut(s)	160, 384, 391, 441, 469
TfiI	GAWTC	1 cut(s)	239
TseFI	GTSAC	2 cut(s)	355, 538
Tsp45I	GTSAC	2 cut(s)	355, 538
TspDTI	ATGAA	3 cut(s)	137, 221, 447
TspGWI	ACGGA	4 cut(s)	216, 291, 343, 562
VpaK11BI	GGWCC	2 cut(s)	153, 302
XapI	RAATTY	1 cut(s)	384
XbaI	TCTAGA	1 cut(s)	79
XhoI	CTCGAG	1 cut(s)	283
XspI	CTAG	2 cut(s)	56, 80
Zsp2I	ATGCAT	2 cut(s)	25, 502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.