Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0009075

Physical Location & Seq

Genomic Coordinates Reverse (-)

538946 .. 540648

Gene Structure 1703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1006700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGAAGAGAAGGATGCCAATGAATTAACAGCAAGCCCTCAGACGACGCAAGAGCTAGCAATGGAAGGCCAGAAGCATCTAGAAGAAACCATCGAGGCAGCTTTCCAGATCCTCTCCTCCATGAACGACGAGCTCTGCAACCCCACCTTGTGGTCCTCCACCGGCACCGCCTCCTCTAACGCTGCAAATGGCCCTTCCTCCCACTCTAATGGCGTCAATAACGGCGATTCGTCTTCTTCTGAAAACACTTCTTCCCATTACCATGGAGACTTGGTTGGCGCTGGTGGTCCTGGCACCGGTGGAGCTCTTGAGGAGGCTCGATTTCGGTATAAGAAATCTGTGGGCTGGCTTCGTGCCGTTCTCGCCGCAATTCCCAAATCTCAGAAGGCAACATACAAAACTAGTTCAACTGCAGTCGGTTCAGAATCACCGGCAGATGAAGCTGAAATTGAGAAGTTAGATGAGCGAGCCACCAATTTGAGAAAGGAGCTTGCGAACAAGAATTTGTATATCAAATTTCTAATAGATCAACTACGGGATCTTATCACTGACATATCAACTTGGCAAAGTCCTTGTTCCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

195

Amino Acids

20.81

Weight (kDa)

4.86

Isoelectric Point (pI)

47.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63480 AT5G63480
fragaria_vesca	FvH4_1g29942 FvH4_2g37750
malus_domestica	MD08G1006700.v1.1 MD15G1005900.v1.1
prunus_persica	Prupe.1G358600_v2.0.a1
pyrus_communis	pycom08g00520 pycom15g00450
rosa_chinensis	RchiOBHm_Chr6g0303761
rosa_laevigata	RLG00000011047 RLG00000027493
rosa_multiflora	Rmu_sc0014011.1_g000001
rosa_rugosa	Rorug02G0181300 Rorug04G0014400 Rorug05G0039400 Rorug06G0324600
rosa_samantha	Rh6AG438900 Rh6BG464100 Rh6CG451200 Rh6DG438100
rosa_wichuraiana	Rw6G038000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	164, 293
AccB7I	CCANNNNNTGG	1 cut(s)	150
AciI	CCGC	2 cut(s)	168, 366
AclWI	GGATC	2 cut(s)	103, 546
AcsI	RAATTY	2 cut(s)	502, 515
AcyI	GRCGYC	1 cut(s)	213
AdeI	CACNNNGTG	1 cut(s)	150
AfiI	CCNNNNNNNGG	2 cut(s)	150, 296
AgeI	ACCGGT	1 cut(s)	296
AgsI	TTSAA	1 cut(s)	408
AhlI	ACTAGT	1 cut(s)	401
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	6 cut(s)	55, 101, 133, 305, 443, 490
AluI	AGCT	6 cut(s)	55, 101, 133, 305, 443, 490
Alw21I	GWGCWC	2 cut(s)	135, 307
Alw26I	GTCTC	1 cut(s)	261
AlwI	GGATC	2 cut(s)	103, 546
AoxI	GGCC	2 cut(s)	67, 190
ApeKI	GCWGC	2 cut(s)	98, 182
ApoI	RAATTY	2 cut(s)	502, 515
AsiGI	ACCGGT	1 cut(s)	296
AspLEI	GCGC	1 cut(s)	281
AspS9I	GGNCC	3 cut(s)	153, 191, 287
AsuHPI	GGTGA	1 cut(s)	420
AsuNHI	GCTAGC	1 cut(s)	55
AvaII	GGWCC	2 cut(s)	153, 287
BanI	GGYRCC	2 cut(s)	164, 293
BanII	GRGCYC	2 cut(s)	135, 307
BarI	GAAGNNNNNNTAC	2 cut(s)	377, 409
BbsI	GAAGAC	1 cut(s)	225
Bbv12I	GWGCWC	2 cut(s)	135, 307
BbvI	GCAGC	2 cut(s)	110, 169
BccI	CCATC	1 cut(s)	98
BceAI	ACGGC	2 cut(s)	238, 341
BciT130I	CCWGG	1 cut(s)	291
BcoDI	GTCTC	1 cut(s)	261
BcuI	ACTAGT	1 cut(s)	401
BfaI	CTAG	3 cut(s)	56, 80, 402
BfmI	CTRYAG	1 cut(s)	411
BfoI	RGCGCY	1 cut(s)	282
BisI	GCNGC	3 cut(s)	99, 183, 366
BlsI	GCNGC	3 cut(s)	100, 184, 367
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	2 cut(s)	153, 287
BmgT120I	GGNCC	3 cut(s)	153, 191, 287
BmiI	GGNNCC	2 cut(s)	166, 295
BmrFI	CCNGG	1 cut(s)	291
BmsI	GCATC	2 cut(s)	4, 85
BmtI	GCTAGC	1 cut(s)	59
BpiI	GAAGAC	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	329
BsaHI	GRCGYC	1 cut(s)	213
BsaJI	CCNNGG	1 cut(s)	262
BsaWI	WCCGGW	1 cut(s)	296
BsaXI	ACNNNNNCTCC	2 cut(s)	258, 288
Bsc4I	CCNNNNNNNGG	2 cut(s)	150, 296
Bse118I	RCCGGY	3 cut(s)	161, 296, 430
Bse3DI	GCAATG	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	1 cut(s)	262
BseGI	GGATG	1 cut(s)	19
BseLI	CCNNNNNNNGG	2 cut(s)	150, 296
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	2 cut(s)	53, 395
BseRI	GAGGAG	3 cut(s)	106, 163, 326
BseXI	GCAGC	2 cut(s)	110, 169
BshFI	GGCC	2 cut(s)	69, 192
BshNI	GGYRCC	2 cut(s)	164, 293
BshTI	ACCGGT	1 cut(s)	296
BsiHKAI	GWGCWC	2 cut(s)	135, 307
BsiSI	CCGG	3 cut(s)	162, 297, 431
BslI	CCNNNNNNNGG	2 cut(s)	150, 296
BsmAI	GTCTC	1 cut(s)	261
BsnI	GGCC	2 cut(s)	69, 192
Bsp1286I	GDGCHC	2 cut(s)	135, 307
Bsp143I	GATC	3 cut(s)	108, 526, 538
Bsp19I	CCATGG	1 cut(s)	262
BspACI	CCGC	2 cut(s)	168, 366
BspANI	GGCC	2 cut(s)	69, 192
BspCNI	CTCAG	2 cut(s)	52, 394
BspLI	GGNNCC	2 cut(s)	166, 295
BspMAI	CTGCAG	1 cut(s)	415
BspOI	GCTAGC	1 cut(s)	59
BspPI	GGATC	2 cut(s)	103, 546
BspT107I	GGYRCC	2 cut(s)	164, 293
BsrDI	GCAATG	1 cut(s)	66
BsrFI	RCCGGY	3 cut(s)	161, 296, 430
BssAI	RCCGGY	3 cut(s)	161, 296, 430
BssECI	CCNNGG	1 cut(s)	262
BssMI	GATC	3 cut(s)	108, 526, 538
BssNI	GRCGYC	1 cut(s)	213
BssT1I	CCWWGG	1 cut(s)	262
Bst2UI	CCWGG	1 cut(s)	291
BstACI	GRCGYC	1 cut(s)	213
BstC8I	GCNNGC	5 cut(s)	34, 57, 347, 468, 492
BstDEI	CTNAG	2 cut(s)	39, 381
BstDSI	CCRYGG	1 cut(s)	262
BstF5I	GGATG	1 cut(s)	19
BstH2I	RGCGCY	1 cut(s)	282
BstHHI	GCGC	1 cut(s)	281
BstKTI	GATC	3 cut(s)	111, 529, 541
BstMAI	GTCTC	1 cut(s)	261
BstMBI	GATC	3 cut(s)	108, 526, 538
BstMWI	GCNNNNNNNGC	2 cut(s)	362, 440
BstNI	CCWGG	1 cut(s)	291
BstSCI	CCNGG	1 cut(s)	289
BstSFI	CTRYAG	1 cut(s)	411
BstV1I	GCAGC	2 cut(s)	110, 169
BstV2I	GAAGAC	1 cut(s)	225
BstX2I	RGATCY	2 cut(s)	108, 538
BstXI	CCANNNNNNTGG	2 cut(s)	209, 263
BstYI	RGATCY	2 cut(s)	108, 538
BsuRI	GGCC	2 cut(s)	69, 192
BtgI	CCRYGG	1 cut(s)	262
BtsCI	GGATG	1 cut(s)	19
BtsIMutI	CAGTG	1 cut(s)	546
Cac8I	GCNNGC	5 cut(s)	34, 57, 347, 468, 492
CfoI	GCGC	1 cut(s)	281
Cfr10I	RCCGGY	3 cut(s)	161, 296, 430
Cfr13I	GGNCC	3 cut(s)	153, 191, 287
CseI	GACGC	2 cut(s)	55, 202
CspAI	ACCGGT	1 cut(s)	296
CviAII	CATG	2 cut(s)	121, 263
DdeI	CTNAG	2 cut(s)	39, 381
DpnI	GATC	3 cut(s)	110, 528, 540
DpnII	GATC	3 cut(s)	108, 526, 538
DraIII	CACNNNGTG	1 cut(s)	150
Ecl136II	GAGCTC	2 cut(s)	133, 305
Eco130I	CCWWGG	1 cut(s)	262
Eco24I	GRGCYC	2 cut(s)	135, 307
Eco47I	GGWCC	2 cut(s)	153, 287
Eco53kI	GAGCTC	2 cut(s)	133, 305
EcoICRI	GAGCTC	2 cut(s)	133, 305
EcoRII	CCWGG	1 cut(s)	289
EcoT14I	CCWWGG	1 cut(s)	262
EcoT38I	GRGCYC	2 cut(s)	135, 307
ErhI	CCWWGG	1 cut(s)	262
FaeI	CATG	2 cut(s)	124, 266
FaiI	YATR	6 cut(s)	122, 264, 330, 394, 510, 554
FatI	CATG	2 cut(s)	120, 262
Fnu4HI	GCNGC	3 cut(s)	99, 183, 366
FokI	GGATG	1 cut(s)	26
FriOI	GRGCYC	2 cut(s)	135, 307
Fsp4HI	GCNGC	3 cut(s)	99, 183, 366
FspBI	CTAG	3 cut(s)	56, 80, 402
GlaI	GCGC	1 cut(s)	280
GluI	GCNGC	3 cut(s)	99, 183, 366
HaeII	RGCGCY	1 cut(s)	282
HaeIII	GGCC	2 cut(s)	69, 192
HapII	CCGG	3 cut(s)	162, 297, 431
HgaI	GACGC	2 cut(s)	55, 202
HhaI	GCGC	1 cut(s)	281
Hin1I	GRCGYC	1 cut(s)	213
Hin1II	CATG	2 cut(s)	124, 266
Hin6I	GCGC	1 cut(s)	279
HinP1I	GCGC	1 cut(s)	279
HinfI	GANTC	2 cut(s)	227, 425
HpaII	CCGG	3 cut(s)	162, 297, 431
HphI	GGTGA	1 cut(s)	420
Hpy188I	TCNGA	5 cut(s)	42, 241, 384, 424, 584
Hpy188III	TCNNGA	3 cut(s)	80, 106, 308
Hpy99I	CGWCG	2 cut(s)	49, 131
HpyAV	CCTTC	4 cut(s)	4, 59, 204, 379
HpyCH4V	TGCA	3 cut(s)	138, 185, 413
HpyF10VI	GCNNNNNNNGC	2 cut(s)	362, 440
HpyF3I	CTNAG	2 cut(s)	39, 381
Hsp92I	GRCGYC	1 cut(s)	213
Hsp92II	CATG	2 cut(s)	124, 266
HspAI	GCGC	1 cut(s)	279
Kzo9I	GATC	3 cut(s)	108, 526, 538
LmnI	GCTCC	2 cut(s)	302, 487
LpnPI	CCDG	9 cut(s)	83, 119, 175, 267, 276, 303, 310, 331, 444
Lsp1109I	GCAGC	2 cut(s)	110, 169
LweI	GCATC	2 cut(s)	4, 85
MaeI	CTAG	3 cut(s)	56, 80, 402
MalI	GATC	3 cut(s)	110, 528, 540
MboI	GATC	3 cut(s)	108, 526, 538
MboII	GAAGA	5 cut(s)	17, 95, 225, 228, 243
MflI	RGATCY	2 cut(s)	108, 538
MhlI	GDGCHC	2 cut(s)	135, 307
MluCI	AATT	6 cut(s)	23, 369, 447, 475, 502, 515
MseI	TTAA	1 cut(s)	26
MslI	CAYNNNNRTG	2 cut(s)	207, 261
MspI	CCGG	3 cut(s)	162, 297, 431
MspR9I	CCNGG	1 cut(s)	291
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	2 cut(s)	362, 440
NcoI	CCATGG	1 cut(s)	262
NdeII	GATC	3 cut(s)	108, 526, 538
NheI	GCTAGC	1 cut(s)	55
NlaIII	CATG	2 cut(s)	124, 266
NlaIV	GGNNCC	2 cut(s)	166, 295
PfeI	GAWTC	2 cut(s)	227, 425
PflMI	CCANNNNNTGG	1 cut(s)	150
PinAI	ACCGGT	1 cut(s)	296
PkrI	GCNGC	3 cut(s)	100, 184, 367
Psp124BI	GAGCTC	2 cut(s)	135, 307
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	2 cut(s)	166, 295
PspPI	GGNCC	3 cut(s)	153, 191, 287
PstI	CTGCAG	1 cut(s)	415
PsuI	RGATCY	2 cut(s)	108, 538
RseI	CAYNNNNRTG	2 cut(s)	207, 261
SacI	GAGCTC	2 cut(s)	135, 307
SaqAI	TTAA	1 cut(s)	26
SatI	GCNGC	3 cut(s)	99, 183, 366
Sau3AI	GATC	3 cut(s)	108, 526, 538
Sau96I	GGNCC	3 cut(s)	153, 191, 287
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	2 cut(s)	135, 307
SetI	ASST	7 cut(s)	57, 103, 135, 149, 307, 445, 492
SfaNI	GCATC	2 cut(s)	4, 85
SfcI	CTRYAG	1 cut(s)	411
SgrAI	CRCCGGYG	1 cut(s)	296
SinI	GGWCC	2 cut(s)	153, 287
SmiMI	CAYNNNNRTG	2 cut(s)	207, 261
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
SpeI	ACTAGT	1 cut(s)	401
Sse9I	AATT	6 cut(s)	23, 369, 447, 475, 502, 515
SsiI	CCGC	2 cut(s)	168, 366
SspMI	CTAG	3 cut(s)	56, 80, 402
SstI	GAGCTC	2 cut(s)	135, 307
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	1 cut(s)	262
TaqI	TCGA	2 cut(s)	93, 319
TasI	AATT	6 cut(s)	23, 369, 447, 475, 502, 515
TauI	GCSGC	1 cut(s)	368
TfiI	GAWTC	2 cut(s)	227, 425
Tru1I	TTAA	1 cut(s)	26
Tru9I	TTAA	1 cut(s)	26
TscAI	CASTG	1 cut(s)	553
TseI	GCWGC	2 cut(s)	98, 182
TspDTI	ATGAA	3 cut(s)	36, 137, 453
TspGWI	ACGGA	1 cut(s)	568
TspRI	CASTG	1 cut(s)	553
Van91I	CCANNNNNTGG	1 cut(s)	150
VpaK11BI	GGWCC	2 cut(s)	153, 287
XapI	RAATTY	2 cut(s)	502, 515
XbaI	TCTAGA	1 cut(s)	79
XspI	CTAG	3 cut(s)	56, 80, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.