Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0009075

Physical Location & Seq

Genomic Coordinates Forward (+)

62245313 .. 62246629

Gene Structure 1317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G038000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGAAGAGAATGAGGCGAATGCATCACCATCAAACCCTAAGACGACGCAAGAGCTAGCAGTAGAAGGCCAGAAGCATCTAGAAGAGACGATAGAGTCAGCTTTCCAGATCCTCGCCTCCATGAACGACGAGCTCTGCAACCCCTTACTCTGGTCCACCAATTCCTCTGCCGCCGCCGCTGCTGCTACCACCGCAAACGGACATTCTTCACTCTCAAACGGCGTCGTTCATAGCGATTCGTCTTCTTCTGACAACACTAATGCCCAAAATCTCGGAGACTCGAGCGGCGGCGGTGGTCCTGGTAATGGCGGAGCTCTTGAGGAGGCTCGGTTTCGGTATAAGAACTCCGTGACGGCGCTCCGGGCTGTTCTGGCAGAAATTCCTAATTCTCAGAAGGCAACATCTGAAACTGGTTCCCCTGCAGATGAAACTGAAATTGAGAAGTTAGAGGAGAAAGCCTCCAATTTGAGAAAGGAGCTTGTGAAGAAAAATGCATATATCAAGGTTCTTATAGATCAGCTACGAGATCTTGTCACAGACATATCAACCTGGCAAAGTCCTTGTTCCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

190

Amino Acids

20.08

Weight (kDa)

4.64

Isoelectric Point (pI)

44.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63480 AT5G63480
fragaria_vesca	FvH4_1g29942 FvH4_2g37750
malus_domestica	MD08G1006700.v1.1 MD15G1005900.v1.1
prunus_persica	Prupe.1G358600_v2.0.a1
pyrus_communis	pycom08g00520 pycom15g00450
rosa_chinensis	RchiOBHm_Chr6g0303761
rosa_laevigata	RLG00000011047 RLG00000027493
rosa_multiflora	Rmu_sc0014011.1_g000001
rosa_rugosa	Rorug02G0181300 Rorug04G0014400 Rorug05G0039400 Rorug06G0324600
rosa_samantha	Rh6AG438900 Rh6BG464100 Rh6CG451200 Rh6DG438100
rosa_wichuraiana	Rw6G038000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	94
AccBSI	CCGCTC	1 cut(s)	285
AciI	CCGC	8 cut(s)	171, 174, 177, 192, 285, 288, 291, 309
AclWI	GGATC	1 cut(s)	103
AcsI	RAATTY	1 cut(s)	378
AcyI	GRCGYC	1 cut(s)	222
AfiI	CCNNNNNNNGG	2 cut(s)	150, 305
AjnI	CCWGG	2 cut(s)	298, 548
AluBI	AGCT	6 cut(s)	55, 101, 133, 314, 478, 520
AluI	AGCT	6 cut(s)	55, 101, 133, 314, 478, 520
Alw21I	GWGCWC	2 cut(s)	135, 316
Alw26I	GTCTC	2 cut(s)	80, 270
AlwI	GGATC	1 cut(s)	103
Ama87I	CYCGRG	1 cut(s)	280
AoxI	GGCC	1 cut(s)	67
ApeKI	GCWGC	2 cut(s)	179, 182
ApoI	RAATTY	1 cut(s)	378
AspLEI	GCGC	1 cut(s)	358
AspS9I	GGNCC	2 cut(s)	153, 296
AsuC2I	CCSGG	1 cut(s)	362
AsuHPI	GGTGA	1 cut(s)	18
AsuNHI	GCTAGC	1 cut(s)	55
AvaI	CYCGRG	1 cut(s)	280
AvaII	GGWCC	2 cut(s)	153, 296
BanII	GRGCYC	2 cut(s)	135, 316
BbsI	GAAGAC	1 cut(s)	234
Bbv12I	GWGCWC	2 cut(s)	135, 316
BbvI	GCAGC	2 cut(s)	166, 169
BccI	CCATC	1 cut(s)	37
BceAI	ACGGC	2 cut(s)	235, 369
BciT130I	CCWGG	2 cut(s)	300, 550
BcnI	CCSGG	1 cut(s)	362
BcoDI	GTCTC	2 cut(s)	80, 270
BfaI	CTAG	2 cut(s)	56, 80
BfmI	CTRYAG	1 cut(s)	420
BfoI	RGCGCY	1 cut(s)	359
BglII	AGATCT	1 cut(s)	526
BisI	GCNGC	7 cut(s)	171, 174, 177, 180, 183, 286, 289
BlsI	GCNGC	7 cut(s)	172, 175, 178, 181, 184, 287, 290
Bme1390I	CCNGG	3 cut(s)	300, 362, 550
Bme18I	GGWCC	2 cut(s)	153, 296
BmeT110I	CYCGRG	1 cut(s)	280
BmgT120I	GGNCC	2 cut(s)	153, 296
BmiI	GGNNCC	1 cut(s)	415
BmrFI	CCNGG	3 cut(s)	300, 362, 550
BmsI	GCATC	2 cut(s)	32, 85
BmtI	GCTAGC	1 cut(s)	59
BpiI	GAAGAC	1 cut(s)	234
BplI	GAGNNNNNCTC	2 cut(s)	443, 475
BpuEI	CTTGAG	1 cut(s)	338
BpuMI	CCSGG	1 cut(s)	362
BsaHI	GRCGYC	1 cut(s)	222
BsaXI	ACNNNNNCTCC	2 cut(s)	314, 344
Bsc4I	CCNNNNNNNGG	2 cut(s)	150, 305
Bse1I	ACTGG	1 cut(s)	415
BseBI	CCWGG	2 cut(s)	300, 550
BseLI	CCNNNNNNNGG	2 cut(s)	150, 305
BseMII	CTCAG	1 cut(s)	404
BseNI	ACTGG	1 cut(s)	415
BseRI	GAGGAG	2 cut(s)	335, 464
BseXI	GCAGC	2 cut(s)	166, 169
BshFI	GGCC	1 cut(s)	69
BsiHKAI	GWGCWC	2 cut(s)	135, 316
BsiHKCI	CYCGRG	1 cut(s)	280
BsiSI	CCGG	1 cut(s)	361
BslI	CCNNNNNNNGG	2 cut(s)	150, 305
BsmAI	GTCTC	2 cut(s)	80, 270
BsmBI	CGTCTC	1 cut(s)	80
BsmI	GAATGC	1 cut(s)	25
BsnI	GGCC	1 cut(s)	69
BsoBI	CYCGRG	1 cut(s)	280
Bsp1286I	GDGCHC	2 cut(s)	135, 316
Bsp143I	GATC	3 cut(s)	108, 514, 526
BspACI	CCGC	8 cut(s)	171, 174, 177, 192, 285, 288, 291, 309
BspANI	GGCC	1 cut(s)	69
BspCNI	CTCAG	1 cut(s)	403
BspLI	GGNNCC	1 cut(s)	415
BspMAI	CTGCAG	1 cut(s)	424
BspOI	GCTAGC	1 cut(s)	59
BspPI	GGATC	1 cut(s)	103
BsrBI	CCGCTC	1 cut(s)	285
BsrI	ACTGG	1 cut(s)	415
BssMI	GATC	3 cut(s)	108, 514, 526
BssNI	GRCGYC	1 cut(s)	222
Bst2UI	CCWGG	2 cut(s)	300, 550
Bst6I	CTCTTC	1 cut(s)	78
BstACI	GRCGYC	1 cut(s)	222
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	2 cut(s)	39, 390
BstH2I	RGCGCY	1 cut(s)	359
BstHHI	GCGC	1 cut(s)	358
BstKTI	GATC	3 cut(s)	111, 517, 529
BstMAI	GTCTC	2 cut(s)	80, 270
BstMBI	GATC	3 cut(s)	108, 514, 526
BstMWI	GCNNNNNNNGC	6 cut(s)	176, 179, 182, 191, 362, 371
BstNI	CCWGG	2 cut(s)	300, 550
BstSCI	CCNGG	3 cut(s)	298, 360, 548
BstSFI	CTRYAG	1 cut(s)	420
BstV1I	GCAGC	2 cut(s)	166, 169
BstV2I	GAAGAC	1 cut(s)	234
BstX2I	RGATCY	2 cut(s)	108, 526
BstYI	RGATCY	2 cut(s)	108, 526
BsuRI	GGCC	1 cut(s)	69
Cac8I	GCNNGC	1 cut(s)	57
CfoI	GCGC	1 cut(s)	358
Cfr13I	GGNCC	2 cut(s)	153, 296
CseI	GACGC	2 cut(s)	55, 211
CviAII	CATG	1 cut(s)	121
DdeI	CTNAG	2 cut(s)	39, 390
DpnI	GATC	3 cut(s)	110, 516, 528
DpnII	GATC	3 cut(s)	108, 514, 526
DrdI	GACNNNNNNGTC	1 cut(s)	94
DseDI	GACNNNNNNGTC	1 cut(s)	94
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
EciI	GGCGGA	1 cut(s)	324
Ecl136II	GAGCTC	2 cut(s)	133, 314
Eco24I	GRGCYC	2 cut(s)	135, 316
Eco47I	GGWCC	2 cut(s)	153, 296
Eco53kI	GAGCTC	2 cut(s)	133, 314
Eco88I	CYCGRG	1 cut(s)	280
EcoICRI	GAGCTC	2 cut(s)	133, 314
EcoRII	CCWGG	2 cut(s)	298, 548
EcoT22I	ATGCAT	2 cut(s)	25, 496
EcoT38I	GRGCYC	2 cut(s)	135, 316
Esp3I	CGTCTC	1 cut(s)	80
FaeI	CATG	1 cut(s)	124
FaiI	YATR	7 cut(s)	122, 231, 339, 496, 498, 512, 542
FatI	CATG	1 cut(s)	120
Fnu4HI	GCNGC	7 cut(s)	171, 174, 177, 180, 183, 286, 289
FriOI	GRGCYC	2 cut(s)	135, 316
Fsp4HI	GCNGC	7 cut(s)	171, 174, 177, 180, 183, 286, 289
FspBI	CTAG	2 cut(s)	56, 80
GlaI	GCGC	1 cut(s)	357
GluI	GCNGC	7 cut(s)	171, 174, 177, 180, 183, 286, 289
HaeII	RGCGCY	1 cut(s)	359
HaeIII	GGCC	1 cut(s)	69
HapII	CCGG	1 cut(s)	361
HgaI	GACGC	2 cut(s)	55, 211
HhaI	GCGC	1 cut(s)	358
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	1 cut(s)	124
Hin6I	GCGC	1 cut(s)	356
HinP1I	GCGC	1 cut(s)	356
HinfI	GANTC	3 cut(s)	95, 236, 278
HpaII	CCGG	1 cut(s)	361
HphI	GGTGA	1 cut(s)	18
Hpy166II	GTNNAC	1 cut(s)	156
Hpy188I	TCNGA	5 cut(s)	250, 275, 393, 406, 572
Hpy188III	TCNNGA	3 cut(s)	80, 106, 317
Hpy8I	GTNNAC	1 cut(s)	156
Hpy99I	CGWCG	3 cut(s)	49, 131, 227
HpyAV	CCTTC	2 cut(s)	59, 388
HpyCH4V	TGCA	4 cut(s)	23, 138, 422, 494
HpyF10VI	GCNNNNNNNGC	6 cut(s)	176, 179, 182, 191, 362, 371
HpyF3I	CTNAG	2 cut(s)	39, 390
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	1 cut(s)	124
HspAI	GCGC	1 cut(s)	356
Kzo9I	GATC	3 cut(s)	108, 514, 526
LmnI	GCTCC	3 cut(s)	311, 363, 475
Lsp1109I	GCAGC	2 cut(s)	166, 169
LweI	GCATC	2 cut(s)	32, 85
MaeI	CTAG	2 cut(s)	56, 80
MaeIII	GTNAC	2 cut(s)	349, 532
MalI	GATC	3 cut(s)	110, 516, 528
MbiI	CCGCTC	1 cut(s)	285
MboI	GATC	3 cut(s)	108, 514, 526
MboII	GAAGA	6 cut(s)	17, 95, 198, 234, 237, 496
MflI	RGATCY	2 cut(s)	108, 526
MhlI	GDGCHC	2 cut(s)	135, 316
MluCI	AATT	5 cut(s)	160, 378, 385, 435, 463
MlyI	GAGTC	2 cut(s)	104, 272
MnlI	CCTC	8 cut(s)	7, 122, 127, 175, 313, 316, 442, 469
Mph1103I	ATGCAT	2 cut(s)	25, 496
MspA1I	CMGCKG	1 cut(s)	179
MspI	CCGG	1 cut(s)	361
MspR9I	CCNGG	3 cut(s)	300, 362, 550
Mva1269I	GAATGC	1 cut(s)	25
MvaI	CCWGG	2 cut(s)	300, 550
MwoI	GCNNNNNNNGC	6 cut(s)	176, 179, 182, 191, 362, 371
NciI	CCSGG	1 cut(s)	362
NdeII	GATC	3 cut(s)	108, 514, 526
NheI	GCTAGC	1 cut(s)	55
NlaIII	CATG	1 cut(s)	124
NlaIV	GGNNCC	1 cut(s)	415
NmuCI	GTSAC	2 cut(s)	349, 532
NsiI	ATGCAT	2 cut(s)	25, 496
PaeR7I	CTCGAG	1 cut(s)	280
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PctI	GAATGC	1 cut(s)	25
PfeI	GAWTC	1 cut(s)	236
PkrI	GCNGC	7 cut(s)	172, 175, 178, 181, 184, 287, 290
PleI	GAGTC	2 cut(s)	103, 272
PpsI	GAGTC	2 cut(s)	103, 272
Psp124BI	GAGCTC	2 cut(s)	135, 316
Psp6I	CCWGG	2 cut(s)	298, 548
PspGI	CCWGG	2 cut(s)	298, 548
PspN4I	GGNNCC	1 cut(s)	415
PspPI	GGNCC	2 cut(s)	153, 296
PspXI	VCTCGAGB	1 cut(s)	280
PstI	CTGCAG	1 cut(s)	424
PsuI	RGATCY	2 cut(s)	108, 526
SacI	GAGCTC	2 cut(s)	135, 316
SatI	GCNGC	7 cut(s)	171, 174, 177, 180, 183, 286, 289
Sau3AI	GATC	3 cut(s)	108, 514, 526
Sau96I	GGNCC	2 cut(s)	153, 296
SchI	GAGTC	2 cut(s)	104, 272
ScrFI	CCNGG	3 cut(s)	300, 362, 550
SduI	GDGCHC	2 cut(s)	135, 316
SetI	ASST	8 cut(s)	57, 103, 135, 316, 480, 507, 522, 551
SfaNI	GCATC	2 cut(s)	32, 85
SfcI	CTRYAG	1 cut(s)	420
Sfr274I	CTCGAG	1 cut(s)	280
SinI	GGWCC	2 cut(s)	153, 296
SlaI	CTCGAG	1 cut(s)	280
SmlI	CTYRAG	2 cut(s)	280, 317
SmoI	CTYRAG	2 cut(s)	280, 317
Sse9I	AATT	5 cut(s)	160, 378, 385, 435, 463
SsiI	CCGC	8 cut(s)	171, 174, 177, 192, 285, 288, 291, 309
SspMI	CTAG	2 cut(s)	56, 80
SstI	GAGCTC	2 cut(s)	135, 316
StyD4I	CCNGG	3 cut(s)	298, 360, 548
TaqI	TCGA	1 cut(s)	281
TasI	AATT	5 cut(s)	160, 378, 385, 435, 463
TauI	GCSGC	5 cut(s)	173, 176, 179, 288, 291
TfiI	GAWTC	1 cut(s)	236
TseFI	GTSAC	2 cut(s)	349, 532
TseI	GCWGC	2 cut(s)	179, 182
Tsp45I	GTSAC	2 cut(s)	349, 532
TspDTI	ATGAA	3 cut(s)	137, 218, 441
TspGWI	ACGGA	3 cut(s)	213, 337, 556
VpaK11BI	GGWCC	2 cut(s)	153, 296
XapI	RAATTY	1 cut(s)	378
XbaI	TCTAGA	1 cut(s)	79
XhoI	CTCGAG	1 cut(s)	280
XspI	CTAG	2 cut(s)	56, 80
Zsp2I	ATGCAT	2 cut(s)	25, 496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.