Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0009075

Physical Location & Seq

Genomic Coordinates Forward (+)

12146313 .. 12146978

Gene Structure 666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027493

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGAACGACGAGCTCTGTAACCCCCTACTTTGGTCCACCAATTCCTTTGCTGTCGCCGCCGCTGTTTCTACCACCGCAAACGGACATTCTTCACTCTCAAATGGCGTTGTTCATAGCGATTCGTCTTCTTATGACAACACTAATACCCAAAATCACGGAGACTCGAGAGGTGGCGGTGGTCCTGGAAATGGCGGAGCTTTTGAGGAGGCTCGGTTTCGAACCAACGGCGGTGGTGGTGAAGGGGATGAGGAAGAGGTTGCTGGATATGGTGTGGAGAGAAAGAGGCCGGGGATTCAGAAGATGAAGCAGAGAAAAGAAGCAGTAGCGGCGGACTCCCAAGAGCGCCAGCGACGGCGTAGACGGTGGAGAATCAGAGGAGGGAAGGAAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

131

Amino Acids

13.95

Weight (kDa)

8.93

Isoelectric Point (pI)

56.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63480 AT5G63480
fragaria_vesca	FvH4_1g29942 FvH4_2g37750
malus_domestica	MD08G1006700.v1.1 MD15G1005900.v1.1
prunus_persica	Prupe.1G358600_v2.0.a1
pyrus_communis	pycom08g00520 pycom15g00450
rosa_chinensis	RchiOBHm_Chr6g0303761
rosa_laevigata	RLG00000011047 RLG00000027493
rosa_multiflora	Rmu_sc0014011.1_g000001
rosa_rugosa	Rorug02G0181300 Rorug04G0014400 Rorug05G0039400 Rorug06G0324600
rosa_samantha	Rh6AG438900 Rh6BG464100 Rh6CG451200 Rh6DG438100
rosa_wichuraiana	Rw6G038000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	358
AciI	CCGC	8 cut(s)	57, 60, 75, 174, 192, 228, 326, 329
AfiI	CCNNNNNNNGG	2 cut(s)	30, 188
AjnI	CCWGG	1 cut(s)	181
AluBI	AGCT	2 cut(s)	13, 197
AluI	AGCT	2 cut(s)	13, 197
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	1 cut(s)	153
Ama87I	CYCGRG	1 cut(s)	163
AoxI	GGCC	1 cut(s)	284
AspLEI	GCGC	1 cut(s)	345
AspS9I	GGNCC	2 cut(s)	33, 179
AsuC2I	CCSGG	1 cut(s)	288
AsuHPI	GGTGA	1 cut(s)	248
AsuII	TTCGAA	1 cut(s)	217
AvaI	CYCGRG	1 cut(s)	163
AvaII	GGWCC	2 cut(s)	33, 179
BanII	GRGCYC	1 cut(s)	15
BbsI	GAAGAC	1 cut(s)	117
Bbv12I	GWGCWC	1 cut(s)	15
BceAI	ACGGC	2 cut(s)	241, 368
BciT130I	CCWGG	1 cut(s)	183
BcnI	CCSGG	1 cut(s)	288
BcoDI	GTCTC	1 cut(s)	153
BfoI	RGCGCY	1 cut(s)	346
BisI	GCNGC	3 cut(s)	57, 60, 327
BlsI	GCNGC	3 cut(s)	58, 61, 328
Bme1390I	CCNGG	2 cut(s)	183, 288
Bme18I	GGWCC	2 cut(s)	33, 179
BmeT110I	CYCGRG	1 cut(s)	163
BmgT120I	GGNCC	2 cut(s)	33, 179
BmrFI	CCNGG	2 cut(s)	183, 288
BpiI	GAAGAC	1 cut(s)	117
Bpu14I	TTCGAA	1 cut(s)	217
BpuMI	CCSGG	1 cut(s)	288
BsaJI	CCNNGG	1 cut(s)	287
BsaXI	ACNNNNNCTCC	2 cut(s)	197, 227
Bsc4I	CCNNNNNNNGG	2 cut(s)	30, 188
BseBI	CCWGG	1 cut(s)	183
BseDI	CCNNGG	1 cut(s)	287
BseGI	GGATG	1 cut(s)	250
BseLI	CCNNNNNNNGG	2 cut(s)	30, 188
BseRI	GAGGAG	2 cut(s)	218, 390
BshFI	GGCC	1 cut(s)	286
BsiHKAI	GWGCWC	1 cut(s)	15
BsiHKCI	CYCGRG	1 cut(s)	163
BsiSI	CCGG	1 cut(s)	287
BslI	CCNNNNNNNGG	2 cut(s)	30, 188
BsmAI	GTCTC	1 cut(s)	153
BsnI	GGCC	1 cut(s)	286
BsoBI	CYCGRG	1 cut(s)	163
Bsp119I	TTCGAA	1 cut(s)	217
Bsp1286I	GDGCHC	1 cut(s)	15
BspACI	CCGC	8 cut(s)	57, 60, 75, 174, 192, 228, 326, 329
BspANI	GGCC	1 cut(s)	286
BspT104I	TTCGAA	1 cut(s)	217
BssECI	CCNNGG	1 cut(s)	287
Bst2UI	CCWGG	1 cut(s)	183
Bst4CI	ACNGT	1 cut(s)	363
Bst6I	CTCTTC	1 cut(s)	246
BstBI	TTCGAA	1 cut(s)	217
BstC8I	GCNNGC	1 cut(s)	347
BstF5I	GGATG	1 cut(s)	250
BstH2I	RGCGCY	1 cut(s)	346
BstHHI	GCGC	1 cut(s)	345
BstMAI	GTCTC	1 cut(s)	153
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 326
BstNI	CCWGG	1 cut(s)	183
BstSCI	CCNGG	2 cut(s)	181, 286
BstV2I	GAAGAC	1 cut(s)	117
BsuRI	GGCC	1 cut(s)	286
BtsCI	GGATG	1 cut(s)	250
Cac8I	GCNNGC	1 cut(s)	347
CfoI	GCGC	1 cut(s)	345
Cfr13I	GGNCC	2 cut(s)	33, 179
CspCI	CAANNNNNGTGG	2 cut(s)	211, 246
CviJI	RGCY	4 cut(s)	13, 197, 209, 286
CviKI_1	RGCY	4 cut(s)	13, 197, 209, 286
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
EciI	GGCGGA	2 cut(s)	207, 344
Ecl136II	GAGCTC	1 cut(s)	13
Eco24I	GRGCYC	1 cut(s)	15
Eco47I	GGWCC	2 cut(s)	33, 179
Eco53kI	GAGCTC	1 cut(s)	13
Eco88I	CYCGRG	1 cut(s)	163
EcoICRI	GAGCTC	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	181
EcoT38I	GRGCYC	1 cut(s)	15
FaiI	YATR	3 cut(s)	114, 132, 267
FblI	GTMKAC	1 cut(s)	358
Fnu4HI	GCNGC	3 cut(s)	57, 60, 327
FokI	GGATG	1 cut(s)	257
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	3 cut(s)	57, 60, 327
GlaI	GCGC	1 cut(s)	344
GluI	GCNGC	3 cut(s)	57, 60, 327
HaeII	RGCGCY	1 cut(s)	346
HaeIII	GGCC	1 cut(s)	286
HapII	CCGG	1 cut(s)	287
HhaI	GCGC	1 cut(s)	345
Hin6I	GCGC	1 cut(s)	343
HinP1I	GCGC	1 cut(s)	343
HinfI	GANTC	5 cut(s)	119, 161, 292, 332, 369
HpaII	CCGG	1 cut(s)	287
HphI	GGTGA	1 cut(s)	248
Hpy166II	GTNNAC	2 cut(s)	36, 359
Hpy188I	TCNGA	2 cut(s)	297, 374
Hpy188III	TCNNGA	1 cut(s)	165
Hpy8I	GTNNAC	2 cut(s)	36, 359
Hpy99I	CGWCG	2 cut(s)	11, 354
HpyAV	CCTTC	3 cut(s)	233, 376, 380
HpyCH4III	ACNGT	1 cut(s)	363
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 326
HspAI	GCGC	1 cut(s)	343
LmnI	GCTCC	1 cut(s)	194
LpnPI	CCDG	5 cut(s)	168, 195, 246, 300, 359
MaeIII	GTNAC	1 cut(s)	17
MboII	GAAGA	4 cut(s)	81, 117, 263, 310
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	1 cut(s)	40
MlyI	GAGTC	2 cut(s)	155, 326
MnlI	CCTC	8 cut(s)	161, 196, 199, 241, 247, 276, 368, 371
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	1 cut(s)	287
MspR9I	CCNGG	2 cut(s)	183, 288
MvaI	CCWGG	1 cut(s)	183
MwoI	GCNNNNNNNGC	2 cut(s)	56, 326
NciI	CCSGG	1 cut(s)	288
NspV	TTCGAA	1 cut(s)	217
PaeR7I	CTCGAG	1 cut(s)	163
PfeI	GAWTC	3 cut(s)	119, 292, 369
PfoI	TCCNGGA	1 cut(s)	181
PkrI	GCNGC	3 cut(s)	58, 61, 328
PleI	GAGTC	2 cut(s)	155, 326
PpsI	GAGTC	2 cut(s)	155, 326
Psp124BI	GAGCTC	1 cut(s)	15
Psp6I	CCWGG	1 cut(s)	181
PspGI	CCWGG	1 cut(s)	181
PspPI	GGNCC	2 cut(s)	33, 179
SacI	GAGCTC	1 cut(s)	15
SatI	GCNGC	3 cut(s)	57, 60, 327
Sau96I	GGNCC	2 cut(s)	33, 179
SchI	GAGTC	2 cut(s)	155, 326
ScrFI	CCNGG	2 cut(s)	183, 288
SduI	GDGCHC	1 cut(s)	15
SetI	ASST	4 cut(s)	15, 172, 199, 258
Sfr274I	CTCGAG	1 cut(s)	163
SfuI	TTCGAA	1 cut(s)	217
SinI	GGWCC	2 cut(s)	33, 179
SlaI	CTCGAG	1 cut(s)	163
SmlI	CTYRAG	1 cut(s)	163
SmoI	CTYRAG	1 cut(s)	163
Sse9I	AATT	1 cut(s)	40
SsiI	CCGC	8 cut(s)	57, 60, 75, 174, 192, 228, 326, 329
SstI	GAGCTC	1 cut(s)	15
StyD4I	CCNGG	2 cut(s)	181, 286
TaaI	ACNGT	1 cut(s)	363
TaqI	TCGA	2 cut(s)	164, 217
TasI	AATT	1 cut(s)	40
TauI	GCSGC	3 cut(s)	59, 62, 329
TfiI	GAWTC	3 cut(s)	119, 292, 369
TspDTI	ATGAA	3 cut(s)	17, 101, 317
TspGWI	ACGGA	2 cut(s)	96, 171
VpaK11BI	GGWCC	2 cut(s)	33, 179
XhoI	CTCGAG	1 cut(s)	163
XmiI	GTMKAC	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.