Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0007698

Physical Location & Seq

Genomic Coordinates Forward (+)

28636846 .. 28637172

Gene Structure 327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g40053.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGAGCTGCCAATCTCTCTCTTTCTCGTCTTCTCTGTCCTTCTCTCTCCTCTGACCGCCCTCGCCAGCGTCACCGACCCCCGCGCTCTAGGCCTCGCTAGGTCCAGCTTCCCCTCCGTGCACGCCCAGCAACTGATCCGAGCCCTCAATCTCTTCCCTGAGTCCGATGCCAACATTATCACCGACGTCGGAGATTCATCTCCGGTCTCCGCCGGGAAGAGGATCGTCGAGAAGCAGTTCACGCTTCACAACATTGTCGGTGAGTCCGGTGTTTCCGTCGAGGACCTTGGCCACCACATGACCAGGTTTGATATTGAACATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

109

Amino Acids

11.71

Weight (kDa)

5.35

Isoelectric Point (pI)

58.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10410
fragaria_vesca	FvH4_2g40053 FvH4_5g04771 FvH4_7g18691 FvH4_7g18691
malus_domestica	MD01G1102600.v1.1 MD07G1169500.v1.1
prunus_persica	Prupe.1G099300_v2.0.a1 Prupe.2G208200_v2.0.a1
pyrus_communis	pycom01g12900 pycom01g12910 pycom07g16320
rosa_chinensis	RchiOBHm_Chr1g0362481
rosa_laevigata	RLG00000027645
rosa_multiflora	Rmu_sc0001823.1_g000006 Rmu_sc0007589.1_g000008
rosa_roxburghii	Rroxscaffold_4G00294130
rosa_rugosa	Rorug01G0298200
rosa_samantha	Rh1AG307700 Rh1BG270800 Rh1CG288400 Rh1DG301000
rosa_wichuraiana	Rw0G003470 Rw1G027300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	189
AccII	CGCG	1 cut(s)	84
AciI	CCGC	3 cut(s)	57, 82, 210
AclWI	GGATC	2 cut(s)	130, 230
AcoI	YGGCCR	1 cut(s)	289
AcyI	GRCGYC	1 cut(s)	186
AfiI	CCNNNNNNNGG	1 cut(s)	219
AgsI	TTSAA	1 cut(s)	317
AjnI	CCWGG	1 cut(s)	302
AluBI	AGCT	2 cut(s)	7, 108
AluI	AGCT	2 cut(s)	7, 108
Alw21I	GWGCWC	1 cut(s)	123
Alw26I	GTCTC	1 cut(s)	211
Alw44I	GTGCAC	1 cut(s)	119
AlwI	GGATC	2 cut(s)	130, 230
AlwNI	CAGNNNCTG	1 cut(s)	133
AoxI	GGCC	2 cut(s)	91, 289
ApaLI	GTGCAC	1 cut(s)	119
ApeKI	GCWGC	1 cut(s)	7
Asp700I	GAANNNNTTC	1 cut(s)	236
AspLEI	GCGC	1 cut(s)	86
AspS9I	GGNCC	2 cut(s)	102, 283
AsuC2I	CCSGG	1 cut(s)	214
AsuHPI	GGTGA	3 cut(s)	64, 172, 272
AvaII	GGWCC	2 cut(s)	102, 283
BaeGI	GKGCMC	1 cut(s)	123
BalI	TGGCCA	1 cut(s)	291
BanII	GRGCYC	1 cut(s)	145
BbsI	GAAGAC	1 cut(s)	22
Bbv12I	GWGCWC	1 cut(s)	123
BciT130I	CCWGG	1 cut(s)	304
BcnI	CCSGG	1 cut(s)	214
BcoDI	GTCTC	1 cut(s)	211
BfaI	CTAG	2 cut(s)	89, 99
BisI	GCNGC	1 cut(s)	8
BlsI	GCNGC	1 cut(s)	9
Bme1390I	CCNGG	2 cut(s)	214, 304
Bme18I	GGWCC	2 cut(s)	102, 283
BmgT120I	GGNCC	2 cut(s)	102, 283
BmrFI	CCNGG	2 cut(s)	214, 304
BmsI	GCATC	1 cut(s)	157
BpiI	GAAGAC	1 cut(s)	22
BpuMI	CCSGG	1 cut(s)	214
BsaHI	GRCGYC	1 cut(s)	186
BsaI	GGTCTC	1 cut(s)	211
BsaJI	CCNNGG	1 cut(s)	286
BsaWI	WCCGGW	2 cut(s)	202, 266
Bsc4I	CCNNNNNNNGG	1 cut(s)	219
BseBI	CCWGG	1 cut(s)	304
BseDI	CCNNGG	1 cut(s)	286
BseLI	CCNNNNNNNGG	1 cut(s)	219
BseMII	CTCAG	1 cut(s)	150
BseRI	GAGGAG	1 cut(s)	39
BseSI	GKGCMC	1 cut(s)	123
BseYI	CCCAGC	1 cut(s)	126
Bsh1236I	CGCG	1 cut(s)	84
BshFI	GGCC	2 cut(s)	93, 291
BsiHKAI	GWGCWC	1 cut(s)	123
BsiSI	CCGG	3 cut(s)	203, 213, 267
BslI	CCNNNNNNNGG	1 cut(s)	219
BsmAI	GTCTC	1 cut(s)	211
BsnI	GGCC	2 cut(s)	93, 291
Bso31I	GGTCTC	1 cut(s)	211
Bsp1286I	GDGCHC	2 cut(s)	123, 145
Bsp143I	GATC	2 cut(s)	135, 222
BspACI	CCGC	3 cut(s)	57, 82, 210
BspANI	GGCC	2 cut(s)	93, 291
BspCNI	CTCAG	1 cut(s)	151
BspFNI	CGCG	1 cut(s)	84
BspPI	GGATC	2 cut(s)	130, 230
BspTNI	GGTCTC	1 cut(s)	211
BssECI	CCNNGG	1 cut(s)	286
BssMI	GATC	2 cut(s)	135, 222
BssNI	GRCGYC	1 cut(s)	186
BssT1I	CCWWGG	1 cut(s)	286
Bst2UI	CCWGG	1 cut(s)	304
Bst6I	CTCTTC	2 cut(s)	158, 212
BstACI	GRCGYC	1 cut(s)	186
BstC8I	GCNNGC	2 cut(s)	67, 123
BstDEI	CTNAG	1 cut(s)	159
BstFNI	CGCG	1 cut(s)	84
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	2 cut(s)	138, 225
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	2 cut(s)	135, 222
BstMWI	GCNNNNNNNGC	3 cut(s)	90, 127, 241
BstNI	CCWGG	1 cut(s)	304
BstSCI	CCNGG	2 cut(s)	212, 302
BstSLI	GKGCMC	1 cut(s)	123
BstUI	CGCG	1 cut(s)	84
BstV2I	GAAGAC	1 cut(s)	22
BsuRI	GGCC	2 cut(s)	93, 291
Cac8I	GCNNGC	2 cut(s)	67, 123
CaiI	CAGNNNCTG	1 cut(s)	133
CfoI	GCGC	1 cut(s)	86
Cfr13I	GGNCC	2 cut(s)	102, 283
CseI	GACGC	1 cut(s)	58
CsiI	ACCWGGT	1 cut(s)	302
CviAII	CATG	1 cut(s)	298
CviJI	RGCY	5 cut(s)	7, 93, 108, 143, 291
CviKI_1	RGCY	5 cut(s)	7, 93, 108, 143, 291
DdeI	CTNAG	1 cut(s)	159
DpnI	GATC	2 cut(s)	137, 224
DpnII	GATC	2 cut(s)	135, 222
EaeI	YGGCCR	1 cut(s)	289
Eam1104I	CTCTTC	2 cut(s)	158, 212
EarI	CTCTTC	2 cut(s)	158, 212
EciI	GGCGGA	1 cut(s)	199
Eco130I	CCWWGG	1 cut(s)	286
Eco147I	AGGCCT	1 cut(s)	93
Eco24I	GRGCYC	1 cut(s)	145
Eco31I	GGTCTC	1 cut(s)	211
Eco47I	GGWCC	2 cut(s)	102, 283
EcoO109I	RGGNCCY	1 cut(s)	283
EcoRII	CCWGG	1 cut(s)	302
EcoT14I	CCWWGG	1 cut(s)	286
EcoT38I	GRGCYC	1 cut(s)	145
ErhI	CCWWGG	1 cut(s)	286
FaeI	CATG	1 cut(s)	301
FaiI	YATR	1 cut(s)	299
FatI	CATG	1 cut(s)	297
FauI	CCCGC	1 cut(s)	89
Fnu4HI	GCNGC	1 cut(s)	8
FriOI	GRGCYC	1 cut(s)	145
Fsp4HI	GCNGC	1 cut(s)	8
FspBI	CTAG	2 cut(s)	89, 99
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	1 cut(s)	8
GsaI	CCCAGC	1 cut(s)	130
HaeIII	GGCC	2 cut(s)	93, 291
HapII	CCGG	3 cut(s)	203, 213, 267
HgaI	GACGC	1 cut(s)	58
HhaI	GCGC	1 cut(s)	86
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	1 cut(s)	301
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HinfI	GANTC	3 cut(s)	161, 194, 263
HpaII	CCGG	3 cut(s)	203, 213, 267
HphI	GGTGA	3 cut(s)	64, 172, 272
Hpy166II	GTNNAC	2 cut(s)	121, 240
Hpy188I	TCNGA	4 cut(s)	54, 140, 166, 191
Hpy188III	TCNNGA	1 cut(s)	229
Hpy8I	GTNNAC	2 cut(s)	121, 240
Hpy99I	CGWCG	4 cut(s)	188, 191, 230, 281
HpyAV	CCTTC	1 cut(s)	50
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	1 cut(s)	121
HpyF10VI	GCNNNNNNNGC	3 cut(s)	90, 127, 241
HpyF3I	CTNAG	1 cut(s)	159
HpySE526I	ACGT	1 cut(s)	186
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	1 cut(s)	301
HspAI	GCGC	1 cut(s)	84
Kzo9I	GATC	2 cut(s)	135, 222
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	9 cut(s)	79, 118, 140, 171, 216, 226, 280, 289, 316
LweI	GCATC	1 cut(s)	157
MabI	ACCWGGT	1 cut(s)	302
MaeI	CTAG	2 cut(s)	89, 99
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	2 cut(s)	137, 224
MboI	GATC	2 cut(s)	135, 222
MboII	GAAGA	3 cut(s)	22, 145, 229
MhlI	GDGCHC	2 cut(s)	123, 145
MlsI	TGGCCA	1 cut(s)	291
MluNI	TGGCCA	1 cut(s)	291
MlyI	GAGTC	2 cut(s)	170, 272
MmeI	TCCRAC	1 cut(s)	169
MnlI	CCTC	7 cut(s)	60, 71, 104, 124, 155, 213, 274
Mox20I	TGGCCA	1 cut(s)	291
MroXI	GAANNNNTTC	1 cut(s)	236
MscI	TGGCCA	1 cut(s)	291
Msp20I	TGGCCA	1 cut(s)	291
MspI	CCGG	3 cut(s)	203, 213, 267
MspR9I	CCNGG	2 cut(s)	214, 304
MvaI	CCWGG	1 cut(s)	304
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	3 cut(s)	90, 127, 241
NciI	CCSGG	1 cut(s)	214
NdeII	GATC	2 cut(s)	135, 222
NlaIII	CATG	1 cut(s)	301
NmuCI	GTSAC	1 cut(s)	70
PceI	AGGCCT	1 cut(s)	93
PdmI	GAANNNNTTC	1 cut(s)	236
PfeI	GAWTC	1 cut(s)	194
PkrI	GCNGC	1 cut(s)	9
PleI	GAGTC	2 cut(s)	169, 271
PpsI	GAGTC	2 cut(s)	169, 271
PpuMI	RGGWCCY	1 cut(s)	283
Psp5II	RGGWCCY	1 cut(s)	283
Psp6I	CCWGG	1 cut(s)	302
PspFI	CCCAGC	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	302
PspPI	GGNCC	2 cut(s)	102, 283
PspPPI	RGGWCCY	1 cut(s)	283
PstNI	CAGNNNCTG	1 cut(s)	133
SatI	GCNGC	1 cut(s)	8
Sau3AI	GATC	2 cut(s)	135, 222
Sau96I	GGNCC	2 cut(s)	102, 283
SchI	GAGTC	2 cut(s)	170, 272
ScrFI	CCNGG	2 cut(s)	214, 304
SduI	GDGCHC	2 cut(s)	123, 145
SetI	ASST	6 cut(s)	9, 104, 110, 189, 288, 308
SexAI	ACCWGGT	1 cut(s)	302
SfaNI	GCATC	1 cut(s)	157
SinI	GGWCC	2 cut(s)	102, 283
SseBI	AGGCCT	1 cut(s)	93
SsiI	CCGC	3 cut(s)	57, 82, 210
SspMI	CTAG	2 cut(s)	89, 99
StuI	AGGCCT	1 cut(s)	93
StyD4I	CCNGG	2 cut(s)	212, 302
StyI	CCWWGG	1 cut(s)	286
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	2 cut(s)	228, 279
TfiI	GAWTC	1 cut(s)	194
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	1 cut(s)	7
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	1 cut(s)	186
TspGWI	ACGGA	2 cut(s)	106, 265
VneI	GTGCAC	1 cut(s)	119
VpaK11BI	GGWCC	2 cut(s)	102, 283
XmnI	GAANNNNTTC	1 cut(s)	236
XspI	CTAG	2 cut(s)	89, 99
ZraI	GACGTC	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.