Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001823.1

Orthogroup ID

OG0007698

Physical Location & Seq

Genomic Coordinates Forward (+)

25015 .. 26473

Gene Structure 1459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001823.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

atggagctcccgatttctcttcttctcgtcttcaccctccttcttgtttggctccaaaaccagttggcgtgcaaactgtctcttttgaggcgttacccttacttcactggttgtatcggtggcggttgcactggcagtcggctcgcggggagactaggactggaagcacggtcgccgggatcctaccaaaaatacttttgggctcaaacacttctctctcctctgaccgccctcgccgaagtcaacaaccctcgcgccctcggcctcgccaggtccagcttcccctccgtgcacgcgcagcagctgatcagagccctcaatctcttcccagactcagatgccaacatcatcgacggcggatatttgtccccggtggccgccgggaagaggatcgtcgagaagcggttcacgctccccaacgtcgtcggcgagtctggggttttcgtcgaagacctcggccaccacgccggttacttcaagattgagcattctcacgccgccaggatgttctacctgttcttcgagtctcgcaccaacaagaaggaccctgttggaaatgagtttgaaatttgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

191

Amino Acids

21.15

Weight (kDa)

8.94

Isoelectric Point (pI)

51.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10410
fragaria_vesca	FvH4_2g40053 FvH4_5g04771 FvH4_7g18691 FvH4_7g18691
malus_domestica	MD01G1102600.v1.1 MD07G1169500.v1.1
prunus_persica	Prupe.1G099300_v2.0.a1 Prupe.2G208200_v2.0.a1
pyrus_communis	pycom01g12900 pycom01g12910 pycom07g16320
rosa_chinensis	RchiOBHm_Chr1g0362481
rosa_laevigata	RLG00000027645
rosa_multiflora	Rmu_sc0001823.1_g000006 Rmu_sc0007589.1_g000008
rosa_roxburghii	Rroxscaffold_4G00294130
rosa_rugosa	Rorug01G0298200
rosa_samantha	Rh1AG307700 Rh1BG270800 Rh1CG288400 Rh1DG301000
rosa_wichuraiana	Rw0G003470 Rw1G027300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	146, 255, 296
AciI	CCGC	7 cut(s)	123, 146, 228, 357, 378, 403, 498
AclWI	GGATC	3 cut(s)	174, 187, 398
AcoI	YGGCCR	2 cut(s)	375, 457
AcsI	RAATTY	1 cut(s)	567
AfiI	CCNNNNNNNGG	1 cut(s)	387
AgsI	TTSAA	2 cut(s)	478, 566
AjnI	CCWGG	2 cut(s)	269, 500
AluBI	AGCT	3 cut(s)	7, 279, 304
AluI	AGCT	3 cut(s)	7, 279, 304
Alw21I	GWGCWC	2 cut(s)	9, 294
Alw26I	GTCTC	3 cut(s)	84, 145, 531
Alw44I	GTGCAC	1 cut(s)	290
AlwI	GGATC	3 cut(s)	174, 187, 398
AlwNI	CAGNNNCTG	1 cut(s)	304
AoxI	GGCC	3 cut(s)	262, 375, 457
ApaLI	GTGCAC	1 cut(s)	290
ApeKI	GCWGC	2 cut(s)	298, 301
ApoI	RAATTY	1 cut(s)	567
Asp700I	GAANNNNTTC	1 cut(s)	404
AspLEI	GCGC	2 cut(s)	257, 298
AspS9I	GGNCC	2 cut(s)	273, 544
AsuC2I	CCSGG	3 cut(s)	177, 371, 382
AsuHPI	GGTGA	1 cut(s)	25
AvaII	GGWCC	2 cut(s)	273, 544
BaeGI	GKGCMC	1 cut(s)	294
BamHI	GGATCC	1 cut(s)	179
BanII	GRGCYC	3 cut(s)	9, 205, 316
BbsI	GAAGAC	2 cut(s)	22, 456
Bbv12I	GWGCWC	2 cut(s)	9, 294
BbvI	GCAGC	2 cut(s)	310, 313
BceAI	ACGGC	1 cut(s)	370
BcgI	CGANNNNNNTGC	2 cut(s)	124, 158
BciT130I	CCWGG	2 cut(s)	271, 502
BclI	TGATCA	1 cut(s)	306
BcnI	CCSGG	3 cut(s)	177, 371, 382
BcoDI	GTCTC	3 cut(s)	84, 145, 531
BfaI	CTAG	1 cut(s)	155
BisI	GCNGC	4 cut(s)	299, 302, 378, 498
BlsI	GCNGC	4 cut(s)	300, 303, 379, 499
Bme1390I	CCNGG	5 cut(s)	177, 271, 371, 382, 502
Bme18I	GGWCC	2 cut(s)	273, 544
BmgT120I	GGNCC	2 cut(s)	273, 544
BmiI	GGNNCC	3 cut(s)	53, 181, 546
BmrFI	CCNGG	5 cut(s)	177, 271, 371, 382, 502
BmsI	GCATC	1 cut(s)	328
BpiI	GAAGAC	2 cut(s)	22, 456
BpuMI	CCSGG	3 cut(s)	177, 371, 382
BsaJI	CCNNGG	3 cut(s)	259, 369, 454
Bsc4I	CCNNNNNNNGG	1 cut(s)	387
Bse118I	RCCGGY	1 cut(s)	467
Bse1I	ACTGG	4 cut(s)	61, 112, 136, 165
BseBI	CCWGG	2 cut(s)	271, 502
BseDI	CCNNGG	3 cut(s)	259, 369, 454
BseGI	GGATG	1 cut(s)	510
BseLI	CCNNNNNNNGG	1 cut(s)	387
BseMII	CTCAG	1 cut(s)	348
BseNI	ACTGG	4 cut(s)	61, 112, 136, 165
BseRI	GAGGAG	1 cut(s)	210
BseSI	GKGCMC	1 cut(s)	294
BseXI	GCAGC	2 cut(s)	310, 313
Bsh1236I	CGCG	3 cut(s)	146, 255, 296
Bsh1285I	CGRYCG	1 cut(s)	173
BshFI	GGCC	3 cut(s)	264, 377, 459
BsiEI	CGRYCG	1 cut(s)	173
BsiHKAI	GWGCWC	2 cut(s)	9, 294
BsiSI	CCGG	4 cut(s)	176, 371, 381, 468
BslFI	GGGAC	1 cut(s)	352
BslI	CCNNNNNNNGG	1 cut(s)	387
BsmAI	GTCTC	3 cut(s)	84, 145, 531
BsmFI	GGGAC	1 cut(s)	352
BsmI	GAATGC	1 cut(s)	487
BsnI	GGCC	3 cut(s)	264, 377, 459
Bsp1286I	GDGCHC	4 cut(s)	9, 205, 294, 316
Bsp143I	GATC	3 cut(s)	179, 306, 390
BspACI	CCGC	7 cut(s)	123, 146, 228, 357, 378, 403, 498
BspANI	GGCC	3 cut(s)	264, 377, 459
BspCNI	CTCAG	1 cut(s)	347
BspFNI	CGCG	3 cut(s)	146, 255, 296
BspLI	GGNNCC	3 cut(s)	53, 181, 546
BspPI	GGATC	3 cut(s)	174, 187, 398
BsrFI	RCCGGY	1 cut(s)	467
BsrI	ACTGG	4 cut(s)	61, 112, 136, 165
BssAI	RCCGGY	1 cut(s)	467
BssECI	CCNNGG	3 cut(s)	259, 369, 454
BssMI	GATC	3 cut(s)	179, 306, 390
Bst2UI	CCWGG	2 cut(s)	271, 502
Bst4CI	ACNGT	2 cut(s)	78, 171
Bst6I	CTCTTC	3 cut(s)	24, 329, 380
BstC8I	GCNNGC	3 cut(s)	70, 144, 294
BstDEI	CTNAG	1 cut(s)	334
BstF5I	GGATG	1 cut(s)	510
BstFNI	CGCG	3 cut(s)	146, 255, 296
BstHHI	GCGC	2 cut(s)	257, 298
BstKTI	GATC	3 cut(s)	182, 309, 393
BstMAI	GTCTC	3 cut(s)	84, 145, 531
BstMBI	GATC	3 cut(s)	179, 306, 390
BstMCI	CGRYCG	1 cut(s)	173
BstMWI	GCNNNNNNNGC	3 cut(s)	261, 298, 409
BstNI	CCWGG	2 cut(s)	271, 502
BstSCI	CCNGG	5 cut(s)	175, 269, 369, 380, 500
BstSLI	GKGCMC	1 cut(s)	294
BstUI	CGCG	3 cut(s)	146, 255, 296
BstV1I	GCAGC	2 cut(s)	310, 313
BstV2I	GAAGAC	2 cut(s)	22, 456
BstX2I	RGATCY	1 cut(s)	179
BstYI	RGATCY	1 cut(s)	179
BsuRI	GGCC	3 cut(s)	264, 377, 459
BtsCI	GGATG	1 cut(s)	510
BtsIMutI	CAGTG	2 cut(s)	105, 129
Cac8I	GCNNGC	3 cut(s)	70, 144, 294
CaiI	CAGNNNCTG	1 cut(s)	304
CfoI	GCGC	2 cut(s)	257, 298
Cfr10I	RCCGGY	1 cut(s)	467
Cfr13I	GGNCC	2 cut(s)	273, 544
DdeI	CTNAG	1 cut(s)	334
DpnI	GATC	3 cut(s)	181, 308, 392
DpnII	GATC	3 cut(s)	179, 306, 390
EaeI	YGGCCR	2 cut(s)	375, 457
Eam1104I	CTCTTC	3 cut(s)	24, 329, 380
EarI	CTCTTC	3 cut(s)	24, 329, 380
EciI	GGCGGA	1 cut(s)	372
Ecl136II	GAGCTC	1 cut(s)	7
Eco24I	GRGCYC	3 cut(s)	9, 205, 316
Eco47I	GGWCC	2 cut(s)	273, 544
Eco53kI	GAGCTC	1 cut(s)	7
EcoICRI	GAGCTC	1 cut(s)	7
EcoO109I	RGGNCCY	1 cut(s)	544
EcoRII	CCWGG	2 cut(s)	269, 500
EcoT38I	GRGCYC	3 cut(s)	9, 205, 316
FaqI	GGGAC	1 cut(s)	352
FauI	CCCGC	1 cut(s)	139
FbaI	TGATCA	1 cut(s)	306
Fnu4HI	GCNGC	4 cut(s)	299, 302, 378, 498
FokI	GGATG	1 cut(s)	517
FriOI	GRGCYC	3 cut(s)	9, 205, 316
Fsp4HI	GCNGC	4 cut(s)	299, 302, 378, 498
FspBI	CTAG	1 cut(s)	155
GlaI	GCGC	2 cut(s)	256, 297
GluI	GCNGC	4 cut(s)	299, 302, 378, 498
HaeIII	GGCC	3 cut(s)	264, 377, 459
HapII	CCGG	4 cut(s)	176, 371, 381, 468
HhaI	GCGC	2 cut(s)	257, 298
Hin6I	GCGC	2 cut(s)	255, 296
HinP1I	GCGC	2 cut(s)	255, 296
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HinfI	GANTC	3 cut(s)	332, 431, 524
HpaII	CCGG	4 cut(s)	176, 371, 381, 468
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	3 cut(s)	244, 292, 408
Hpy188I	TCNGA	3 cut(s)	225, 311, 337
Hpy188III	TCNNGA	3 cut(s)	10, 397, 478
Hpy8I	GTNNAC	3 cut(s)	244, 292, 408
Hpy99I	CGWCG	5 cut(s)	356, 398, 425, 428, 449
HpyAV	CCTTC	2 cut(s)	50, 535
HpyCH4III	ACNGT	2 cut(s)	78, 171
HpyCH4IV	ACGT	1 cut(s)	420
HpyCH4V	TGCA	3 cut(s)	72, 129, 292
HpyF10VI	GCNNNNNNNGC	3 cut(s)	261, 298, 409
HpyF3I	CTNAG	1 cut(s)	334
HpySE526I	ACGT	1 cut(s)	420
HspAI	GCGC	2 cut(s)	255, 296
Ksp22I	TGATCA	1 cut(s)	306
Kzo9I	GATC	3 cut(s)	179, 306, 390
LmnI	GCTCC	4 cut(s)	4, 12, 57, 417
Lsp1109I	GCAGC	2 cut(s)	310, 313
LweI	GCATC	1 cut(s)	328
MaeI	CTAG	1 cut(s)	155
MaeII	ACGT	1 cut(s)	420
MaeIII	GTNAC	2 cut(s)	92, 470
MalI	GATC	3 cut(s)	181, 308, 392
MboI	GATC	3 cut(s)	179, 306, 390
MboII	GAAGA	7 cut(s)	11, 14, 22, 316, 397, 461, 511
MflI	RGATCY	1 cut(s)	179
MhlI	GDGCHC	4 cut(s)	9, 205, 294, 316
MluCI	AATT	1 cut(s)	567
MlyI	GAGTC	3 cut(s)	326, 440, 533
MmeI	TCCRAC	1 cut(s)	532
MroXI	GAANNNNTTC	1 cut(s)	404
MseI	TTAA	1 cut(s)	574
MspA1I	CMGCKG	1 cut(s)	304
MspI	CCGG	4 cut(s)	176, 371, 381, 468
MspR9I	CCNGG	5 cut(s)	177, 271, 371, 382, 502
Mva1269I	GAATGC	1 cut(s)	487
MvaI	CCWGG	2 cut(s)	271, 502
MvnI	CGCG	3 cut(s)	146, 255, 296
MwoI	GCNNNNNNNGC	3 cut(s)	261, 298, 409
NciI	CCSGG	3 cut(s)	177, 371, 382
NdeII	GATC	3 cut(s)	179, 306, 390
NlaIV	GGNNCC	3 cut(s)	53, 181, 546
NmeAIII	GCCGAG	2 cut(s)	240, 435
PcsI	WCGNNNNNNNCGW	1 cut(s)	426
PctI	GAATGC	1 cut(s)	487
PdmI	GAANNNNTTC	1 cut(s)	404
PkrI	GCNGC	4 cut(s)	300, 303, 379, 499
PleI	GAGTC	3 cut(s)	326, 439, 532
PpsI	GAGTC	3 cut(s)	326, 439, 532
PpuMI	RGGWCCY	1 cut(s)	544
Psp124BI	GAGCTC	1 cut(s)	9
Psp5II	RGGWCCY	1 cut(s)	544
Psp6I	CCWGG	2 cut(s)	269, 500
PspGI	CCWGG	2 cut(s)	269, 500
PspN4I	GGNNCC	3 cut(s)	53, 181, 546
PspPI	GGNCC	2 cut(s)	273, 544
PspPPI	RGGWCCY	1 cut(s)	544
PstNI	CAGNNNCTG	1 cut(s)	304
PsuI	RGATCY	1 cut(s)	179
PvuII	CAGCTG	1 cut(s)	304
SacI	GAGCTC	1 cut(s)	9
SaqAI	TTAA	1 cut(s)	574
SatI	GCNGC	4 cut(s)	299, 302, 378, 498
Sau3AI	GATC	3 cut(s)	179, 306, 390
Sau96I	GGNCC	2 cut(s)	273, 544
SchI	GAGTC	3 cut(s)	326, 440, 533
ScrFI	CCNGG	5 cut(s)	177, 271, 371, 382, 502
SduI	GDGCHC	4 cut(s)	9, 205, 294, 316
SetI	ASST	7 cut(s)	9, 275, 281, 306, 423, 456, 516
SfaNI	GCATC	1 cut(s)	328
SinI	GGWCC	2 cut(s)	273, 544
Sse9I	AATT	1 cut(s)	567
SsiI	CCGC	7 cut(s)	123, 146, 228, 357, 378, 403, 498
SspMI	CTAG	1 cut(s)	155
SstI	GAGCTC	1 cut(s)	9
StyD4I	CCNGG	5 cut(s)	175, 269, 369, 380, 500
TaaI	ACNGT	2 cut(s)	78, 171
TaiI	ACGT	1 cut(s)	423
TaqI	TCGA	4 cut(s)	351, 396, 447, 522
TasI	AATT	1 cut(s)	567
TauI	GCSGC	2 cut(s)	380, 500
Tru1I	TTAA	1 cut(s)	574
Tru9I	TTAA	1 cut(s)	574
TscAI	CASTG	2 cut(s)	112, 136
TseI	GCWGC	2 cut(s)	298, 301
TspGWI	ACGGA	1 cut(s)	277
TspRI	CASTG	2 cut(s)	112, 136
VneI	GTGCAC	1 cut(s)	290
VpaK11BI	GGWCC	2 cut(s)	273, 544
XapI	RAATTY	1 cut(s)	567
XmnI	GAANNNNTTC	1 cut(s)	404
XspI	CTAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.