Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0007698

Physical Location & Seq

Genomic Coordinates Forward (+)

13522898 .. 13525724

Gene Structure 2827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g12910.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGCCGCCAAGTGAGATGTTCTATCTCTTCTTCGAGTCTCGCACCAACAAGAAGGACCCTGTTGTTATTTGGTTGACTGGCGGTCCGGGGTGCAGCAGTGAATTGGCTGTATTTTACGAAAATGGTCCTTTCACTATCGCAAATAACTTGTCACTTGTGTGGAACGAGTATGGTTGGGATAAGGCATCTAATCTTCTGTATGTTGACCAGCCTATTGGGACTGGCTTCAGTTATAGTAGTGACAAACGTGACATTCGTCACTCTGAAGATGGTGTTAGCAATGACCTTTATGACTTCTTACAGGCCTTCTTTGCCGAGCACCCTGAGTTGGCAAAGAATGACTTTTTCATAACTGGAGAGTCATATGCTGGACACTATATTCCAGCTTTTGCTGCTCGAGTCCACAAAGGAAACAAAGCCAAAGAAGGAATCCATATAAATTTGAAGGGATTTGCCATTGGCAATGGGCTTACTGATCCTGCAGTCCAGTATAAGGCTTACACAGATTTTGCGTTGGACAATGGCTTAATCACAGCAACTGAATATAATCGTATTAACAAAGTGCTTCCAGTTTGTGAAATGGCTATAAAGCTCTGTGGCACTGATGGTACAGTCTCTTGCATGGCTTCATATTTTGTTTGCAATACCATATTCAGTAGCATCATGGCGAAGGCCGGAAACATAAATTACTATGACATCAGACAGAAGTGTGAGGGGAGCCTTTGCTATGACTTCTCAAACATGGAGAAATTCCTGAACCTGAAGCCTGTTAGAGAGTCACTTGGAGTTGGGGACATCGAATTTGTTTCATGCAGCTCTACAGTGTATGAAGCCATGCTGGTGGACTGGATGAGGAACCTCGAAGTGGGCATCCCCACTCTTCTCGAGGACGGAATCCAATTGCTTGTGTATGCAGGAGAATATGATCTAATCTGCAACTGGCTTGGTAACTCAAGATGGGTCCATGCCATGGAATGGTCTGGTCAGAAACAGTTTGTAACTTCTCCGGAAGTTCCTTTTGTTGTCGATAAGTCAGAAGCAGGAGTTCTCAAGAACCATGGGCCTCTTAGCTTCCTTAAGGTCCATGATGCCGGCCACATGGTTCCGATGGACCAGCCCAAGGCTGCACTGGAGATGTTGAGGAGGTGGACTCGGGGATCAATTGCTGAATCCGCAGGTGAACCAGAAAAACAGGTTGCTCAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

403

Amino Acids

44.9

Weight (kDa)

5.08

Isoelectric Point (pI)

40.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10410
fragaria_vesca	FvH4_2g40053 FvH4_5g04771 FvH4_7g18691 FvH4_7g18691
malus_domestica	MD01G1102600.v1.1 MD07G1169500.v1.1
prunus_persica	Prupe.1G099300_v2.0.a1 Prupe.2G208200_v2.0.a1
pyrus_communis	pycom01g12900 pycom01g12910 pycom07g16320
rosa_chinensis	RchiOBHm_Chr1g0362481
rosa_laevigata	RLG00000027645
rosa_multiflora	Rmu_sc0001823.1_g000006 Rmu_sc0007589.1_g000008
rosa_roxburghii	Rroxscaffold_4G00294130
rosa_rugosa	Rorug01G0298200
rosa_samantha	Rh1AG307700 Rh1BG270800 Rh1CG288400 Rh1DG301000
rosa_wichuraiana	Rw0G003470 Rw1G027300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1166
Acc36I	ACCTGC	1 cut(s)	1166
AccB7I	CCANNNNNTGG	2 cut(s)	970, 975
AccIII	TCCGGA	1 cut(s)	1006
AciI	CCGC	3 cut(s)	5, 81, 1173
AclWI	GGATC	2 cut(s)	470, 1165
AcoI	YGGCCR	1 cut(s)	1093
AcsI	RAATTY	3 cut(s)	439, 749, 800
AcuI	CTGAAG	3 cut(s)	211, 285, 782
AfaI	GTAC	1 cut(s)	610
AfiI	CCNNNNNNNGG	6 cut(s)	328, 493, 865, 970, 975, 1120
AflII	CTTAAG	1 cut(s)	1076
AgsI	TTSAA	1 cut(s)	445
AhdI	GACNNNNNGTC	1 cut(s)	81
AleI	CACNNNNGTG	1 cut(s)	157
AluBI	AGCT	4 cut(s)	386, 592, 816, 1071
AluI	AGCT	4 cut(s)	386, 592, 816, 1071
Alw21I	GWGCWC	1 cut(s)	321
Alw26I	GTCTC	2 cut(s)	42, 619
AlwI	GGATC	2 cut(s)	470, 1165
AlwNI	CAGNNNCTG	1 cut(s)	539
Ama87I	CYCGRG	3 cut(s)	396, 884, 1152
Aor13HI	TCCGGA	1 cut(s)	1006
AoxI	GGCC	4 cut(s)	303, 672, 1061, 1093
ApeKI	GCWGC	4 cut(s)	93, 392, 813, 1124
ApoI	RAATTY	3 cut(s)	439, 749, 800
ArsI	GACNNNNNNTTYG	4 cut(s)	134, 166, 785, 817
AspS9I	GGNCC	7 cut(s)	55, 83, 125, 961, 1061, 1081, 1111
AsuC2I	CCSGG	1 cut(s)	87
AsuHPI	GGTGA	1 cut(s)	1190
AvaI	CYCGRG	3 cut(s)	396, 884, 1152
AvaII	GGWCC	6 cut(s)	55, 83, 125, 961, 1081, 1111
Bbv12I	GWGCWC	1 cut(s)	321
BbvI	GCAGC	4 cut(s)	105, 379, 825, 1111
BccI	CCATC	4 cut(s)	263, 599, 951, 1102
BcnI	CCSGG	1 cut(s)	87
BcoDI	GTCTC	2 cut(s)	42, 619
BfmI	CTRYAG	2 cut(s)	480, 819
BfrI	CTTAAG	1 cut(s)	1076
BfuAI	ACCTGC	1 cut(s)	1166
BisI	GCNGC	5 cut(s)	5, 94, 393, 814, 1125
BlsI	GCNGC	5 cut(s)	6, 95, 394, 815, 1126
Bme1390I	CCNGG	1 cut(s)	87
Bme18I	GGWCC	6 cut(s)	55, 83, 125, 961, 1081, 1111
BmeRI	GACNNNNNGTC	1 cut(s)	81
BmeT110I	CYCGRG	3 cut(s)	396, 884, 1152
BmgT120I	GGNCC	7 cut(s)	55, 83, 125, 961, 1061, 1081, 1111
BmiI	GGNNCC	5 cut(s)	57, 719, 857, 962, 1104
BmrFI	CCNGG	1 cut(s)	87
BmsI	GCATC	4 cut(s)	194, 669, 879, 1078
BoxI	GACNNNNGTC	1 cut(s)	255
BplI	GAGNNNNNCTC	2 cut(s)	1135, 1167
BpmI	CTGGAG	2 cut(s)	375, 1151
BpuEI	CTTGAG	2 cut(s)	937, 1034
BpuMI	CCSGG	1 cut(s)	87
BsaJI	CCNNGG	4 cut(s)	86, 969, 1057, 1119
BsaWI	WCCGGW	1 cut(s)	1006
Bsc4I	CCNNNNNNNGG	6 cut(s)	328, 493, 865, 970, 975, 1120
Bse118I	RCCGGY	1 cut(s)	1091
Bse1I	ACTGG	8 cut(s)	82, 226, 358, 487, 569, 851, 944, 1134
Bse3DI	GCAATG	2 cut(s)	286, 469
BseAI	TCCGGA	1 cut(s)	1006
BseDI	CCNNGG	4 cut(s)	86, 969, 1057, 1119
BseGI	GGATG	2 cut(s)	855, 870
BseLI	CCNNNNNNNGG	6 cut(s)	328, 493, 865, 970, 975, 1120
BseMI	GCAATG	2 cut(s)	286, 469
BseMII	CTCAG	1 cut(s)	315
BseNI	ACTGG	8 cut(s)	82, 226, 358, 487, 569, 851, 944, 1134
BseRI	GAGGAG	1 cut(s)	1156
BseXI	GCAGC	4 cut(s)	105, 379, 825, 1111
BsgI	GTGCAG	2 cut(s)	112, 1110
BshFI	GGCC	4 cut(s)	305, 674, 1063, 1095
BsiHKAI	GWGCWC	1 cut(s)	321
BsiHKCI	CYCGRG	3 cut(s)	396, 884, 1152
BsiSI	CCGG	4 cut(s)	86, 675, 1007, 1092
BslFI	GGGAC	2 cut(s)	232, 806
BslI	CCNNNNNNNGG	6 cut(s)	328, 493, 865, 970, 975, 1120
BsmAI	GTCTC	2 cut(s)	42, 619
BsmFI	GGGAC	2 cut(s)	232, 806
BsnI	GGCC	4 cut(s)	305, 674, 1063, 1095
BsoBI	CYCGRG	3 cut(s)	396, 884, 1152
Bsp1286I	GDGCHC	1 cut(s)	321
Bsp13I	TCCGGA	1 cut(s)	1006
Bsp143I	GATC	3 cut(s)	475, 925, 1157
Bsp19I	CCATGG	2 cut(s)	969, 1057
BspACI	CCGC	3 cut(s)	5, 81, 1173
BspANI	GGCC	4 cut(s)	305, 674, 1063, 1095
BspCNI	CTCAG	1 cut(s)	316
BspEI	TCCGGA	1 cut(s)	1006
BspLI	GGNNCC	5 cut(s)	57, 719, 857, 962, 1104
BspMAI	CTGCAG	1 cut(s)	484
BspMI	ACCTGC	1 cut(s)	1166
BspPI	GGATC	2 cut(s)	470, 1165
BspTI	CTTAAG	1 cut(s)	1076
BsrDI	GCAATG	2 cut(s)	286, 469
BsrFI	RCCGGY	1 cut(s)	1091
BsrI	ACTGG	8 cut(s)	82, 226, 358, 487, 569, 851, 944, 1134
BssAI	RCCGGY	1 cut(s)	1091
BssECI	CCNNGG	4 cut(s)	86, 969, 1057, 1119
BssMI	GATC	3 cut(s)	475, 925, 1157
BssT1I	CCWWGG	3 cut(s)	969, 1057, 1119
Bst4CI	ACNGT	3 cut(s)	613, 823, 993
Bst6I	CTCTTC	2 cut(s)	32, 885
BstAFI	CTTAAG	1 cut(s)	1076
BstC8I	GCNNGC	1 cut(s)	1093
BstDEI	CTNAG	3 cut(s)	324, 1067, 1200
BstDSI	CCRYGG	2 cut(s)	969, 1057
BstF5I	GGATG	2 cut(s)	855, 870
BstKTI	GATC	3 cut(s)	478, 928, 1160
BstMAI	GTCTC	2 cut(s)	42, 619
BstMBI	GATC	3 cut(s)	475, 925, 1157
BstMWI	GCNNNNNNNGC	3 cut(s)	311, 392, 1172
BstPAI	GACNNNNGTC	1 cut(s)	255
BstSCI	CCNGG	1 cut(s)	85
BstSFI	CTRYAG	2 cut(s)	480, 819
BstV1I	GCAGC	4 cut(s)	105, 379, 825, 1111
BstXI	CCANNNNNNTGG	2 cut(s)	215, 841
BsuRI	GGCC	4 cut(s)	305, 674, 1063, 1095
BtgI	CCRYGG	2 cut(s)	969, 1057
BtsCI	GGATG	2 cut(s)	855, 870
BtsI	GCAGTG	1 cut(s)	103
BtsIMutI	CAGTG	4 cut(s)	103, 600, 828, 1127
BveI	ACCTGC	1 cut(s)	1166
Cac8I	GCNNGC	1 cut(s)	1093
CaiI	CAGNNNCTG	1 cut(s)	539
Cfr10I	RCCGGY	1 cut(s)	1091
Cfr13I	GGNCC	7 cut(s)	55, 83, 125, 961, 1061, 1081, 1111
CpoI	CGGWCCG	1 cut(s)	83
Csp6I	GTAC	1 cut(s)	609
CspI	CGGWCCG	1 cut(s)	83
CviQI	GTAC	1 cut(s)	609
DdeI	CTNAG	3 cut(s)	324, 1067, 1200
DpnI	GATC	3 cut(s)	477, 927, 1159
DpnII	GATC	3 cut(s)	475, 925, 1157
DriI	GACNNNNNGTC	1 cut(s)	81
EaeI	YGGCCR	1 cut(s)	1093
Eam1104I	CTCTTC	2 cut(s)	32, 885
Eam1105I	GACNNNNNGTC	1 cut(s)	81
EarI	CTCTTC	2 cut(s)	32, 885
Eco130I	CCWWGG	3 cut(s)	969, 1057, 1119
Eco147I	AGGCCT	1 cut(s)	305
Eco47I	GGWCC	6 cut(s)	55, 83, 125, 961, 1081, 1111
Eco57I	CTGAAG	3 cut(s)	211, 285, 782
Eco88I	CYCGRG	3 cut(s)	396, 884, 1152
EcoO109I	RGGNCCY	1 cut(s)	55
EcoT14I	CCWWGG	3 cut(s)	969, 1057, 1119
ErhI	CCWWGG	3 cut(s)	969, 1057, 1119
FalI	AAGNNNNNCTT	2 cut(s)	326, 358
FaqI	GGGAC	2 cut(s)	232, 806
FauNDI	CATATG	1 cut(s)	364
Fnu4HI	GCNGC	5 cut(s)	5, 94, 393, 814, 1125
FokI	GGATG	2 cut(s)	857, 862
Fsp4HI	GCNGC	5 cut(s)	5, 94, 393, 814, 1125
GluI	GCNGC	5 cut(s)	5, 94, 393, 814, 1125
GsuI	CTGGAG	2 cut(s)	375, 1151
HaeIII	GGCC	4 cut(s)	305, 674, 1063, 1095
HapII	CCGG	4 cut(s)	86, 675, 1007, 1092
HincII	GTYRAC	2 cut(s)	75, 205
HindII	GTYRAC	2 cut(s)	75, 205
HinfI	GANTC	8 cut(s)	35, 359, 399, 429, 776, 894, 1150, 1169
HpaII	CCGG	4 cut(s)	86, 675, 1007, 1092
HphI	GGTGA	1 cut(s)	1190
Hpy166II	GTNNAC	6 cut(s)	75, 205, 403, 844, 1149, 1181
Hpy188I	TCNGA	6 cut(s)	265, 701, 987, 1036, 1107, 1203
Hpy188III	TCNNGA	5 cut(s)	754, 884, 954, 1007, 1051
Hpy8I	GTNNAC	6 cut(s)	75, 205, 403, 844, 1149, 1181
HpyAV	CCTTC	5 cut(s)	46, 316, 419, 439, 664
HpyCH4III	ACNGT	3 cut(s)	613, 823, 993
HpyCH4IV	ACGT	1 cut(s)	247
HpyCH4V	TGCA	8 cut(s)	93, 482, 621, 642, 813, 914, 936, 1127
HpyF10VI	GCNNNNNNNGC	3 cut(s)	311, 392, 1172
HpyF3I	CTNAG	3 cut(s)	324, 1067, 1200
HpySE526I	ACGT	1 cut(s)	247
Kpn2I	TCCGGA	1 cut(s)	1006
KroI	GCCGGC	1 cut(s)	1091
KroNI	GCCGGC	1 cut(s)	1093
Kzo9I	GATC	3 cut(s)	475, 925, 1157
LmnI	GCTCC	1 cut(s)	717
Lsp1109I	GCAGC	4 cut(s)	105, 379, 825, 1111
LweI	GCATC	4 cut(s)	194, 669, 879, 1078
MaeII	ACGT	1 cut(s)	247
MaeIII	GTNAC	7 cut(s)	150, 239, 248, 257, 777, 947, 997
MalI	GATC	3 cut(s)	477, 927, 1159
MboI	GATC	3 cut(s)	475, 925, 1157
MboII	GAAGA	5 cut(s)	19, 22, 185, 278, 872
MfeI	CAATTG	2 cut(s)	899, 1161
MhlI	GDGCHC	1 cut(s)	321
MluCI	AATT	7 cut(s)	101, 439, 685, 749, 800, 899, 1161
MlyI	GAGTC	5 cut(s)	44, 368, 408, 785, 1144
MmeI	TCCRAC	1 cut(s)	495
MnlI	CCTC	7 cut(s)	706, 846, 869, 880, 1074, 1134, 1137
MroI	TCCGGA	1 cut(s)	1006
MroNI	GCCGGC	1 cut(s)	1091
MseI	TTAA	3 cut(s)	527, 555, 1077
MslI	CAYNNNNRTG	2 cut(s)	157, 839
MspCI	CTTAAG	1 cut(s)	1076
MspI	CCGG	4 cut(s)	86, 675, 1007, 1092
MspR9I	CCNGG	1 cut(s)	87
MunI	CAATTG	2 cut(s)	899, 1161
MwoI	GCNNNNNNNGC	3 cut(s)	311, 392, 1172
NaeI	GCCGGC	1 cut(s)	1093
NciI	CCSGG	1 cut(s)	87
NcoI	CCATGG	2 cut(s)	969, 1057
NdeI	CATATG	1 cut(s)	364
NdeII	GATC	3 cut(s)	475, 925, 1157
NgoMIV	GCCGGC	1 cut(s)	1091
NlaIV	GGNNCC	5 cut(s)	57, 719, 857, 962, 1104
NmeAIII	GCCGAG	1 cut(s)	340
NmuCI	GTSAC	5 cut(s)	150, 239, 248, 257, 777
OliI	CACNNNNGTG	1 cut(s)	157
PaeR7I	CTCGAG	2 cut(s)	396, 884
PaqCI	CACCTGC	1 cut(s)	1166
PceI	AGGCCT	1 cut(s)	305
PcsI	WCGNNNNNNNCGW	1 cut(s)	253
PdiI	GCCGGC	1 cut(s)	1093
PfeI	GAWTC	3 cut(s)	429, 894, 1169
PflMI	CCANNNNNTGG	2 cut(s)	970, 975
PkrI	GCNGC	5 cut(s)	6, 95, 394, 815, 1126
PleI	GAGTC	5 cut(s)	43, 367, 407, 784, 1144
PpsI	GAGTC	5 cut(s)	43, 367, 407, 784, 1144
PpuMI	RGGWCCY	1 cut(s)	55
PshAI	GACNNNNGTC	1 cut(s)	255
Psp5II	RGGWCCY	1 cut(s)	55
PspN4I	GGNNCC	5 cut(s)	57, 719, 857, 962, 1104
PspPI	GGNCC	7 cut(s)	55, 83, 125, 961, 1061, 1081, 1111
PspPPI	RGGWCCY	1 cut(s)	55
PspXI	VCTCGAGB	1 cut(s)	396
PstI	CTGCAG	1 cut(s)	484
PstNI	CAGNNNCTG	1 cut(s)	539
RsaI	GTAC	1 cut(s)	610
RsaNI	GTAC	1 cut(s)	609
RseI	CAYNNNNRTG	2 cut(s)	157, 839
Rsr2I	CGGWCCG	1 cut(s)	83
RsrII	CGGWCCG	1 cut(s)	83
SaqAI	TTAA	3 cut(s)	527, 555, 1077
SatI	GCNGC	5 cut(s)	5, 94, 393, 814, 1125
Sau3AI	GATC	3 cut(s)	475, 925, 1157
Sau96I	GGNCC	7 cut(s)	55, 83, 125, 961, 1061, 1081, 1111
SchI	GAGTC	5 cut(s)	44, 368, 408, 785, 1144
ScrFI	CCNGG	1 cut(s)	87
SduI	GDGCHC	1 cut(s)	321
SfaNI	GCATC	4 cut(s)	194, 669, 879, 1078
SfcI	CTRYAG	2 cut(s)	480, 819
Sfr274I	CTCGAG	2 cut(s)	396, 884
SinI	GGWCC	6 cut(s)	55, 83, 125, 961, 1081, 1111
SlaI	CTCGAG	2 cut(s)	396, 884
SmiMI	CAYNNNNRTG	2 cut(s)	157, 839
SmlI	CTYRAG	5 cut(s)	396, 884, 952, 1049, 1076
SmoI	CTYRAG	5 cut(s)	396, 884, 952, 1049, 1076
Sse9I	AATT	7 cut(s)	101, 439, 685, 749, 800, 899, 1161
SseBI	AGGCCT	1 cut(s)	305
SsiI	CCGC	3 cut(s)	5, 81, 1173
StuI	AGGCCT	1 cut(s)	305
StyD4I	CCNGG	1 cut(s)	85
StyI	CCWWGG	3 cut(s)	969, 1057, 1119
TaaI	ACNGT	3 cut(s)	613, 823, 993
TaiI	ACGT	1 cut(s)	250
TaqI	TCGA	6 cut(s)	33, 397, 798, 861, 885, 1026
TasI	AATT	7 cut(s)	101, 439, 685, 749, 800, 899, 1161
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	3 cut(s)	429, 894, 1169
Tru1I	TTAA	3 cut(s)	527, 555, 1077
Tru9I	TTAA	3 cut(s)	527, 555, 1077
TscAI	CASTG	4 cut(s)	103, 607, 828, 1134
TseFI	GTSAC	5 cut(s)	150, 239, 248, 257, 777
TseI	GCWGC	4 cut(s)	93, 392, 813, 1124
Tsp45I	GTSAC	5 cut(s)	150, 239, 248, 257, 777
TspDTI	ATGAA	4 cut(s)	337, 618, 798, 843
TspGWI	ACGGA	1 cut(s)	906
TspRI	CASTG	4 cut(s)	103, 607, 828, 1134
Van91I	CCANNNNNTGG	2 cut(s)	970, 975
Vha464I	CTTAAG	1 cut(s)	1076
VpaK11BI	GGWCC	6 cut(s)	55, 83, 125, 961, 1081, 1111
XapI	RAATTY	3 cut(s)	439, 749, 800
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1126
XhoI	CTCGAG	2 cut(s)	396, 884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.