Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0007698

Physical Location & Seq

Genomic Coordinates Forward (+)

2842964 .. 2843287

Gene Structure 324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g04771.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGAGCTCTCAATCTCTCTCCTTCTCGTCTTCTATGTCCTTCTCTCTCCTCTGACAGCCCTCGCCGGCGTCACCGACCCCCGCGCTCTCGGCCTCGCTAGGTCCAGCTTCCCCTCCGTGCACGCCCAGCAGTTGATCCAAGCCCTCAATCTCTTCCCCGAGTCCCATGCCAACATTATCACCGACGCCGGAGATTCGTCTCCAGTCTCCGCCAGGAAGAGGATCGTCGAGAAGCGGTTCACGCTTCACAACATTGTCAACGAGTTCGGTGTTTCCGTCGAGGACCTCGGCCACCACGCGGCCAGGTTTGGTATTGAACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

108

Amino Acids

11.64

Weight (kDa)

6.27

Isoelectric Point (pI)

60.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10410
fragaria_vesca	FvH4_2g40053 FvH4_5g04771 FvH4_7g18691 FvH4_7g18691
malus_domestica	MD01G1102600.v1.1 MD07G1169500.v1.1
prunus_persica	Prupe.1G099300_v2.0.a1 Prupe.2G208200_v2.0.a1
pyrus_communis	pycom01g12900 pycom01g12910 pycom07g16320
rosa_chinensis	RchiOBHm_Chr1g0362481
rosa_laevigata	RLG00000027645
rosa_multiflora	Rmu_sc0001823.1_g000006 Rmu_sc0007589.1_g000008
rosa_roxburghii	Rroxscaffold_4G00294130
rosa_rugosa	Rorug01G0298200
rosa_samantha	Rh1AG307700 Rh1BG270800 Rh1CG288400 Rh1DG301000
rosa_wichuraiana	Rw0G003470 Rw1G027300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	84, 299
AciI	CCGC	4 cut(s)	82, 210, 235, 299
AclWI	GGATC	2 cut(s)	130, 230
AcoI	YGGCCR	2 cut(s)	289, 300
AcyI	GRCGYC	2 cut(s)	69, 186
AfiI	CCNNNNNNNGG	2 cut(s)	219, 298
AgsI	TTSAA	1 cut(s)	317
AjnI	CCWGG	2 cut(s)	212, 302
AluBI	AGCT	2 cut(s)	7, 108
AluI	AGCT	2 cut(s)	7, 108
Alw21I	GWGCWC	2 cut(s)	9, 123
Alw26I	GTCTC	2 cut(s)	204, 211
Alw44I	GTGCAC	1 cut(s)	119
AlwI	GGATC	2 cut(s)	130, 230
Ama87I	CYCGRG	1 cut(s)	158
AoxI	GGCC	3 cut(s)	91, 289, 300
ApaLI	GTGCAC	1 cut(s)	119
Asp700I	GAANNNNTTC	1 cut(s)	236
AspLEI	GCGC	1 cut(s)	86
AspS9I	GGNCC	2 cut(s)	102, 283
AsuHPI	GGTGA	2 cut(s)	64, 172
AvaI	CYCGRG	1 cut(s)	158
AvaII	GGWCC	2 cut(s)	102, 283
BaeGI	GKGCMC	1 cut(s)	123
BanII	GRGCYC	1 cut(s)	9
BbsI	GAAGAC	1 cut(s)	22
Bbv12I	GWGCWC	2 cut(s)	9, 123
BcgI	CGANNNNNNTGC	2 cut(s)	149, 183
BciT130I	CCWGG	2 cut(s)	214, 304
BcoDI	GTCTC	2 cut(s)	204, 211
BfaI	CTAG	1 cut(s)	99
BisI	GCNGC	1 cut(s)	300
BlsI	GCNGC	1 cut(s)	301
Bme1390I	CCNGG	2 cut(s)	214, 304
Bme18I	GGWCC	2 cut(s)	102, 283
BmeT110I	CYCGRG	1 cut(s)	158
BmgT120I	GGNCC	2 cut(s)	102, 283
BmrFI	CCNGG	2 cut(s)	214, 304
BpiI	GAAGAC	1 cut(s)	22
BpmI	CTGGAG	1 cut(s)	186
BsaHI	GRCGYC	2 cut(s)	69, 186
BsaJI	CCNNGG	1 cut(s)	286
Bsc4I	CCNNNNNNNGG	2 cut(s)	219, 298
Bse118I	RCCGGY	1 cut(s)	65
Bse1I	ACTGG	1 cut(s)	203
BseBI	CCWGG	2 cut(s)	214, 304
BseDI	CCNNGG	1 cut(s)	286
BseLI	CCNNNNNNNGG	2 cut(s)	219, 298
BseNI	ACTGG	1 cut(s)	203
BseRI	GAGGAG	1 cut(s)	39
BseSI	GKGCMC	1 cut(s)	123
BseYI	CCCAGC	1 cut(s)	126
Bsh1236I	CGCG	2 cut(s)	84, 299
BshFI	GGCC	3 cut(s)	93, 291, 302
BsiHKAI	GWGCWC	2 cut(s)	9, 123
BsiHKCI	CYCGRG	1 cut(s)	158
BsiSI	CCGG	2 cut(s)	66, 189
BslFI	GGGAC	1 cut(s)	148
BslI	CCNNNNNNNGG	2 cut(s)	219, 298
BsmAI	GTCTC	2 cut(s)	204, 211
BsmBI	CGTCTC	1 cut(s)	204
BsmFI	GGGAC	1 cut(s)	148
BsnI	GGCC	3 cut(s)	93, 291, 302
BsoBI	CYCGRG	1 cut(s)	158
Bsp1286I	GDGCHC	2 cut(s)	9, 123
Bsp143I	GATC	2 cut(s)	135, 222
BspACI	CCGC	4 cut(s)	82, 210, 235, 299
BspANI	GGCC	3 cut(s)	93, 291, 302
BspFNI	CGCG	2 cut(s)	84, 299
BspPI	GGATC	2 cut(s)	130, 230
BsrFI	RCCGGY	1 cut(s)	65
BsrI	ACTGG	1 cut(s)	203
BssAI	RCCGGY	1 cut(s)	65
BssECI	CCNNGG	1 cut(s)	286
BssMI	GATC	2 cut(s)	135, 222
BssNI	GRCGYC	2 cut(s)	69, 186
Bst2UI	CCWGG	2 cut(s)	214, 304
Bst6I	CTCTTC	2 cut(s)	158, 212
BstACI	GRCGYC	2 cut(s)	69, 186
BstC8I	GCNNGC	2 cut(s)	67, 123
BstFNI	CGCG	2 cut(s)	84, 299
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	2 cut(s)	138, 225
BstMAI	GTCTC	2 cut(s)	204, 211
BstMBI	GATC	2 cut(s)	135, 222
BstMWI	GCNNNNNNNGC	3 cut(s)	90, 127, 241
BstNI	CCWGG	2 cut(s)	214, 304
BstSCI	CCNGG	2 cut(s)	212, 302
BstSLI	GKGCMC	1 cut(s)	123
BstUI	CGCG	2 cut(s)	84, 299
BstV2I	GAAGAC	1 cut(s)	22
BsuRI	GGCC	3 cut(s)	93, 291, 302
Cac8I	GCNNGC	2 cut(s)	67, 123
CfoI	GCGC	1 cut(s)	86
Cfr10I	RCCGGY	1 cut(s)	65
Cfr13I	GGNCC	2 cut(s)	102, 283
CseI	GACGC	2 cut(s)	58, 194
CviAII	CATG	1 cut(s)	167
CviJI	RGCY	7 cut(s)	7, 59, 93, 108, 143, 291, 302
CviKI_1	RGCY	7 cut(s)	7, 59, 93, 108, 143, 291, 302
DpnI	GATC	2 cut(s)	137, 224
DpnII	GATC	2 cut(s)	135, 222
EaeI	YGGCCR	2 cut(s)	289, 300
Eam1104I	CTCTTC	2 cut(s)	158, 212
EarI	CTCTTC	2 cut(s)	158, 212
EciI	GGCGGA	1 cut(s)	199
Ecl136II	GAGCTC	1 cut(s)	7
Eco24I	GRGCYC	1 cut(s)	9
Eco47I	GGWCC	2 cut(s)	102, 283
Eco53kI	GAGCTC	1 cut(s)	7
Eco88I	CYCGRG	1 cut(s)	158
EcoICRI	GAGCTC	1 cut(s)	7
EcoO109I	RGGNCCY	1 cut(s)	283
EcoRII	CCWGG	2 cut(s)	212, 302
EcoT38I	GRGCYC	1 cut(s)	9
Esp3I	CGTCTC	1 cut(s)	204
FaeI	CATG	1 cut(s)	170
FaiI	YATR	2 cut(s)	36, 168
FaqI	GGGAC	1 cut(s)	148
FatI	CATG	1 cut(s)	166
FauI	CCCGC	1 cut(s)	89
Fnu4HI	GCNGC	1 cut(s)	300
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	1 cut(s)	300
FspBI	CTAG	1 cut(s)	99
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	1 cut(s)	300
GsaI	CCCAGC	1 cut(s)	130
GsuI	CTGGAG	1 cut(s)	186
HaeIII	GGCC	3 cut(s)	93, 291, 302
HapII	CCGG	2 cut(s)	66, 189
HgaI	GACGC	2 cut(s)	58, 194
HhaI	GCGC	1 cut(s)	86
Hin1I	GRCGYC	2 cut(s)	69, 186
Hin1II	CATG	1 cut(s)	170
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HinfI	GANTC	2 cut(s)	161, 194
HpaII	CCGG	2 cut(s)	66, 189
HphI	GGTGA	2 cut(s)	64, 172
Hpy166II	GTNNAC	3 cut(s)	121, 240, 259
Hpy188I	TCNGA	1 cut(s)	54
Hpy188III	TCNNGA	1 cut(s)	229
Hpy8I	GTNNAC	3 cut(s)	121, 240, 259
Hpy99I	CGWCG	3 cut(s)	188, 230, 281
HpyAV	CCTTC	2 cut(s)	32, 50
HpyCH4V	TGCA	1 cut(s)	121
HpyF10VI	GCNNNNNNNGC	3 cut(s)	90, 127, 241
Hsp92I	GRCGYC	2 cut(s)	69, 186
Hsp92II	CATG	1 cut(s)	170
HspAI	GCGC	1 cut(s)	84
KroI	GCCGGC	1 cut(s)	65
KroNI	GCCGGC	1 cut(s)	67
Kzo9I	GATC	2 cut(s)	135, 222
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	9 cut(s)	79, 118, 140, 199, 202, 216, 226, 289, 316
MaeI	CTAG	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	2 cut(s)	137, 224
MboI	GATC	2 cut(s)	135, 222
MboII	GAAGA	3 cut(s)	22, 145, 229
MhlI	GDGCHC	2 cut(s)	9, 123
MlyI	GAGTC	1 cut(s)	170
MnlI	CCTC	8 cut(s)	60, 71, 104, 124, 155, 213, 274, 296
MreI	CGCCGGCG	1 cut(s)	65
MroNI	GCCGGC	1 cut(s)	65
MroXI	GAANNNNTTC	1 cut(s)	236
MseI	TTAA	1 cut(s)	322
MspI	CCGG	2 cut(s)	66, 189
MspR9I	CCNGG	2 cut(s)	214, 304
MvaI	CCWGG	2 cut(s)	214, 304
MvnI	CGCG	2 cut(s)	84, 299
MwoI	GCNNNNNNNGC	3 cut(s)	90, 127, 241
NaeI	GCCGGC	1 cut(s)	67
NdeII	GATC	2 cut(s)	135, 222
NgoMIV	GCCGGC	1 cut(s)	65
NlaIII	CATG	1 cut(s)	170
NmeAIII	GCCGAG	2 cut(s)	69, 267
NmuCI	GTSAC	1 cut(s)	70
PcsI	WCGNNNNNNNCGW	1 cut(s)	273
PdiI	GCCGGC	1 cut(s)	67
PdmI	GAANNNNTTC	1 cut(s)	236
PfeI	GAWTC	1 cut(s)	194
PkrI	GCNGC	1 cut(s)	301
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PpuMI	RGGWCCY	1 cut(s)	283
Psp124BI	GAGCTC	1 cut(s)	9
Psp5II	RGGWCCY	1 cut(s)	283
Psp6I	CCWGG	2 cut(s)	212, 302
PspFI	CCCAGC	1 cut(s)	126
PspGI	CCWGG	2 cut(s)	212, 302
PspPI	GGNCC	2 cut(s)	102, 283
PspPPI	RGGWCCY	1 cut(s)	283
SacI	GAGCTC	1 cut(s)	9
SaqAI	TTAA	1 cut(s)	322
SatI	GCNGC	1 cut(s)	300
Sau3AI	GATC	2 cut(s)	135, 222
Sau96I	GGNCC	2 cut(s)	102, 283
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	2 cut(s)	214, 304
SduI	GDGCHC	2 cut(s)	9, 123
SetI	ASST	5 cut(s)	9, 104, 110, 288, 308
SgrAI	CRCCGGYG	1 cut(s)	65
SinI	GGWCC	2 cut(s)	102, 283
SsiI	CCGC	4 cut(s)	82, 210, 235, 299
SspMI	CTAG	1 cut(s)	99
SstI	GAGCTC	1 cut(s)	9
StyD4I	CCNGG	2 cut(s)	212, 302
TaqI	TCGA	2 cut(s)	228, 279
TauI	GCSGC	1 cut(s)	302
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	1 cut(s)	322
Tru9I	TTAA	1 cut(s)	322
TseFI	GTSAC	1 cut(s)	70
Tsp45I	GTSAC	1 cut(s)	70
TspGWI	ACGGA	2 cut(s)	106, 265
VneI	GTGCAC	1 cut(s)	119
VpaK11BI	GGWCC	2 cut(s)	102, 283
XmnI	GAANNNNTTC	1 cut(s)	236
XspI	CTAG	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.