Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007698

Physical Location & Seq

Genomic Coordinates Forward (+)

41417168 .. 41420069

Gene Structure 2902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0298200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGAATAATGAGGTAATGTTAAAAAAGATCGATTTGATCGGAGATTCTCTCTCCAAGTTTCTCTCTCCGACGCCAGCTTCCGATTGCTCTTGGTCTCTCTACGACGATCCCGTCCTCCAAGTCTCCCTTCAAATCGAACAGTTGCCGATCACCGCTGCGCTCTCCAAGTTCTTCTCCGACGTCCTCCTCAGAACCTTGCCGTCGACGTCGCAGACTTCGAGGCTCCAAAACGGCGCAGTTTCTGTTCCGGAAGCAGTGCGGTTCGGGTTTCAGAGAAGTTTAGGAATTATGAAACAGTTCTACTTTCAAAATGGTCGTCCACCACCTAATGGACTTAAGAAACAATGTCTTTCCAGAATTGATGAGCTTTTCAGCAGTCATATGGATGGATTGCAAATGCAGGAATTTAAGACGGTTACAAAGGAAAGAGATAGATACTGGCTGCAGTGGGATAGTGGCCAGGTCAAGTCTCTGATTGATGATGCATCGTCATGTATTTCTATTGGTGCCCAAGGGAACTCTCTTAGTGCAAATGCCGTTGGGATCAACTCACTACCTTCCATGTTTCAGGCTGGTAGTACACCCCCACTTCCACCGCGAAGTTCCTCCAGCTCTCCACGCTTTTCAACGCCGAAAACTGGCCCATCTTCACTAGGCTCTCTTTTTATTTACCTTTGTTATCCATCAGCATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

231

Amino Acids

25.31

Weight (kDa)

8.68

Isoelectric Point (pI)

50.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10410
fragaria_vesca	FvH4_2g40053 FvH4_5g04771 FvH4_7g18691 FvH4_7g18691
malus_domestica	MD01G1102600.v1.1 MD07G1169500.v1.1
prunus_persica	Prupe.1G099300_v2.0.a1 Prupe.2G208200_v2.0.a1
pyrus_communis	pycom01g12900 pycom01g12910 pycom07g16320
rosa_chinensis	RchiOBHm_Chr1g0362481
rosa_laevigata	RLG00000027645
rosa_multiflora	Rmu_sc0001823.1_g000006 Rmu_sc0007589.1_g000008
rosa_roxburghii	Rroxscaffold_4G00294130
rosa_rugosa	Rorug01G0298200
rosa_samantha	Rh1AG307700 Rh1BG270800 Rh1CG288400 Rh1DG301000
rosa_wichuraiana	Rw0G003470 Rw1G027300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	110
AatII	GACGTC	2 cut(s)	183, 209
AccB1I	GGYRCC	1 cut(s)	506
AccB7I	CCANNNNNTGG	1 cut(s)	329
AccI	GTMKAC	1 cut(s)	203
AccII	CGCG	1 cut(s)	598
AccIII	TCCGGA	1 cut(s)	247
AciI	CCGC	3 cut(s)	153, 259, 596
AclWI	GGATC	2 cut(s)	101, 551
AcoI	YGGCCR	1 cut(s)	457
AcsI	RAATTY	1 cut(s)	404
AcyI	GRCGYC	3 cut(s)	71, 180, 206
AfaI	GTAC	1 cut(s)	580
AfiI	CCNNNNNNNGG	2 cut(s)	329, 638
AflII	CTTAAG	1 cut(s)	335
AgsI	TTSAA	3 cut(s)	131, 308, 627
AjnI	CCWGG	1 cut(s)	459
AjuI	GAANNNNNNNTTGG	2 cut(s)	111, 143
AluBI	AGCT	3 cut(s)	77, 367, 612
AluI	AGCT	3 cut(s)	77, 367, 612
Alw26I	GTCTC	3 cut(s)	99, 127, 474
AlwI	GGATC	2 cut(s)	101, 551
AlwNI	CAGNNNCTG	1 cut(s)	242
Aor13HI	TCCGGA	1 cut(s)	247
AoxI	GGCC	2 cut(s)	457, 640
ApeKI	GCWGC	2 cut(s)	155, 442
ApoI	RAATTY	1 cut(s)	404
ArsI	GACNNNNNNTTYG	2 cut(s)	301, 333
Asp700I	GAANNNNTTC	1 cut(s)	296
AspLEI	GCGC	2 cut(s)	160, 236
AspS9I	GGNCC	1 cut(s)	641
AsuHPI	GGTGA	1 cut(s)	142
BaeGI	GKGCMC	1 cut(s)	511
BalI	TGGCCA	1 cut(s)	459
BanI	GGYRCC	1 cut(s)	506
BbvI	GCAGC	2 cut(s)	142, 429
BccI	CCATC	3 cut(s)	380, 652, 691
BceAI	ACGGC	3 cut(s)	184, 247, 521
BciT130I	CCWGG	1 cut(s)	461
BcoDI	GTCTC	3 cut(s)	99, 127, 474
BfaI	CTAG	1 cut(s)	653
BfmI	CTRYAG	1 cut(s)	443
BfrI	CTTAAG	1 cut(s)	335
BisI	GCNGC	2 cut(s)	156, 443
BlsI	GCNGC	2 cut(s)	157, 444
Bme1390I	CCNGG	1 cut(s)	461
BmgT120I	GGNCC	1 cut(s)	641
BmiI	GGNNCC	2 cut(s)	224, 508
BmrFI	CCNGG	1 cut(s)	461
BmsI	GCATC	2 cut(s)	472, 494
BplI	GAGNNNNNCTC	2 cut(s)	33, 65
BpmI	CTGGAG	1 cut(s)	592
Bsa29I	ATCGAT	1 cut(s)	30
BsaHI	GRCGYC	3 cut(s)	71, 180, 206
BsaI	GGTCTC	1 cut(s)	99
BsaJI	CCNNGG	1 cut(s)	511
BsaWI	WCCGGW	1 cut(s)	247
Bsc4I	CCNNNNNNNGG	2 cut(s)	329, 638
Bse1I	ACTGG	2 cut(s)	443, 643
BseAI	TCCGGA	1 cut(s)	247
BseBI	CCWGG	1 cut(s)	461
BseCI	ATCGAT	1 cut(s)	30
BseDI	CCNNGG	1 cut(s)	511
BseGI	GGATG	1 cut(s)	391
BseLI	CCNNNNNNNGG	2 cut(s)	329, 638
BseMII	CTCAG	1 cut(s)	202
BseNI	ACTGG	2 cut(s)	443, 643
BseRI	GAGGAG	1 cut(s)	176
BseSI	GKGCMC	1 cut(s)	511
BseXI	GCAGC	2 cut(s)	142, 429
Bsh1236I	CGCG	1 cut(s)	598
BshFI	GGCC	2 cut(s)	459, 642
BshNI	GGYRCC	1 cut(s)	506
BshVI	ATCGAT	1 cut(s)	30
BsiSI	CCGG	1 cut(s)	248
BslI	CCNNNNNNNGG	2 cut(s)	329, 638
BsmAI	GTCTC	3 cut(s)	99, 127, 474
BsnI	GGCC	2 cut(s)	459, 642
Bso31I	GGTCTC	1 cut(s)	99
Bsp1286I	GDGCHC	1 cut(s)	511
Bsp13I	TCCGGA	1 cut(s)	247
Bsp143I	GATC	5 cut(s)	27, 36, 106, 147, 543
BspACI	CCGC	3 cut(s)	153, 259, 596
BspANI	GGCC	2 cut(s)	459, 642
BspCNI	CTCAG	1 cut(s)	201
BspDI	ATCGAT	1 cut(s)	30
BspEI	TCCGGA	1 cut(s)	247
BspFNI	CGCG	1 cut(s)	598
BspLI	GGNNCC	2 cut(s)	224, 508
BspMAI	CTGCAG	1 cut(s)	447
BspPI	GGATC	2 cut(s)	101, 551
BspT107I	GGYRCC	1 cut(s)	506
BspTI	CTTAAG	1 cut(s)	335
BspTNI	GGTCTC	1 cut(s)	99
BsrI	ACTGG	2 cut(s)	443, 643
BssECI	CCNNGG	1 cut(s)	511
BssMI	GATC	5 cut(s)	27, 36, 106, 147, 543
BssNI	GRCGYC	3 cut(s)	71, 180, 206
BssT1I	CCWWGG	1 cut(s)	511
Bst2UI	CCWGG	1 cut(s)	461
Bst4CI	ACNGT	3 cut(s)	141, 297, 415
BstACI	GRCGYC	3 cut(s)	71, 180, 206
BstAFI	CTTAAG	1 cut(s)	335
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	2 cut(s)	188, 524
BstF5I	GGATG	1 cut(s)	391
BstFNI	CGCG	1 cut(s)	598
BstHHI	GCGC	2 cut(s)	160, 236
BstKTI	GATC	5 cut(s)	30, 39, 109, 150, 546
BstMAI	GTCTC	3 cut(s)	99, 127, 474
BstMBI	GATC	5 cut(s)	27, 36, 106, 147, 543
BstMWI	GCNNNNNNNGC	1 cut(s)	618
BstNI	CCWGG	1 cut(s)	461
BstSCI	CCNGG	1 cut(s)	459
BstSFI	CTRYAG	1 cut(s)	443
BstSLI	GKGCMC	1 cut(s)	511
BstUI	CGCG	1 cut(s)	598
BstV1I	GCAGC	2 cut(s)	142, 429
Bsu15I	ATCGAT	1 cut(s)	30
BsuRI	GGCC	2 cut(s)	459, 642
BsuTUI	ATCGAT	1 cut(s)	30
BtsCI	GGATG	1 cut(s)	391
BtsI	GCAGTG	2 cut(s)	261, 452
BtsIMutI	CAGTG	2 cut(s)	261, 452
Cac8I	GCNNGC	1 cut(s)	75
CaiI	CAGNNNCTG	1 cut(s)	242
CfoI	GCGC	2 cut(s)	160, 236
Cfr13I	GGNCC	1 cut(s)	641
ClaI	ATCGAT	1 cut(s)	30
CseI	GACGC	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	579
CviAII	CATG	2 cut(s)	492, 562
CviJI	RGCY	9 cut(s)	77, 223, 367, 442, 459, 572, 612, 642, 657
CviKI_1	RGCY	9 cut(s)	77, 223, 367, 442, 459, 572, 612, 642, 657
CviQI	GTAC	1 cut(s)	579
DdeI	CTNAG	2 cut(s)	188, 524
DpnI	GATC	5 cut(s)	29, 38, 108, 149, 545
DpnII	GATC	5 cut(s)	27, 36, 106, 147, 543
DrdI	GACNNNNNNGTC	1 cut(s)	110
DseDI	GACNNNNNNGTC	1 cut(s)	110
EaeI	YGGCCR	1 cut(s)	457
Eco130I	CCWWGG	1 cut(s)	511
Eco31I	GGTCTC	1 cut(s)	99
EcoRII	CCWGG	1 cut(s)	459
EcoT14I	CCWWGG	1 cut(s)	511
EcoT22I	ATGCAT	1 cut(s)	487
ErhI	CCWWGG	1 cut(s)	511
FaeI	CATG	2 cut(s)	495, 565
FaiI	YATR	5 cut(s)	290, 381, 383, 493, 563
FalI	AAGNNNNNCTT	2 cut(s)	111, 143
FatI	CATG	2 cut(s)	491, 561
FauNDI	CATATG	1 cut(s)	381
FblI	GTMKAC	1 cut(s)	203
Fnu4HI	GCNGC	2 cut(s)	156, 443
FokI	GGATG	1 cut(s)	398
Fsp4HI	GCNGC	2 cut(s)	156, 443
FspBI	CTAG	1 cut(s)	653
GlaI	GCGC	2 cut(s)	159, 235
GluI	GCNGC	2 cut(s)	156, 443
GsuI	CTGGAG	1 cut(s)	592
HaeIII	GGCC	2 cut(s)	459, 642
HapII	CCGG	1 cut(s)	248
HgaI	GACGC	1 cut(s)	79
HhaI	GCGC	2 cut(s)	160, 236
Hin1I	GRCGYC	3 cut(s)	71, 180, 206
Hin1II	CATG	2 cut(s)	495, 565
Hin6I	GCGC	2 cut(s)	158, 234
HinP1I	GCGC	2 cut(s)	158, 234
HincII	GTYRAC	1 cut(s)	204
HindII	GTYRAC	1 cut(s)	204
HinfI	GANTC	1 cut(s)	44
HpaII	CCGG	1 cut(s)	248
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	3 cut(s)	204, 320, 581
Hpy188I	TCNGA	7 cut(s)	41, 69, 82, 178, 191, 273, 474
Hpy188III	TCNNGA	2 cut(s)	248, 354
Hpy8I	GTNNAC	3 cut(s)	204, 320, 581
Hpy99I	CGWCG	6 cut(s)	73, 107, 182, 205, 208, 211
HpyAV	CCTTC	2 cut(s)	137, 567
HpyCH4III	ACNGT	3 cut(s)	141, 297, 415
HpyCH4IV	ACGT	2 cut(s)	180, 206
HpyCH4V	TGCA	5 cut(s)	394, 400, 445, 485, 530
HpyF10VI	GCNNNNNNNGC	1 cut(s)	618
HpyF3I	CTNAG	2 cut(s)	188, 524
HpySE526I	ACGT	2 cut(s)	180, 206
Hsp92I	GRCGYC	3 cut(s)	71, 180, 206
Hsp92II	CATG	2 cut(s)	495, 565
HspAI	GCGC	2 cut(s)	158, 234
Kpn2I	TCCGGA	1 cut(s)	247
Kzo9I	GATC	5 cut(s)	27, 36, 106, 147, 543
LmnI	GCTCC	1 cut(s)	228
Lsp1109I	GCAGC	2 cut(s)	142, 429
LweI	GCATC	2 cut(s)	472, 494
MaeI	CTAG	1 cut(s)	653
MaeII	ACGT	2 cut(s)	180, 206
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	5 cut(s)	29, 38, 108, 149, 545
MboI	GATC	5 cut(s)	27, 36, 106, 147, 543
MboII	GAAGA	2 cut(s)	163, 639
MhlI	GDGCHC	1 cut(s)	511
MlsI	TGGCCA	1 cut(s)	459
MluCI	AATT	3 cut(s)	285, 357, 404
MluNI	TGGCCA	1 cut(s)	459
MmeI	TCCRAC	2 cut(s)	92, 201
MnlI	CCTC	6 cut(s)	4, 125, 194, 197, 213, 616
Mox20I	TGGCCA	1 cut(s)	459
Mph1103I	ATGCAT	1 cut(s)	487
MroI	TCCGGA	1 cut(s)	247
MroXI	GAANNNNTTC	1 cut(s)	296
MscI	TGGCCA	1 cut(s)	459
MseI	TTAA	3 cut(s)	20, 336, 408
MslI	CAYNNNNRTG	2 cut(s)	384, 490
Msp20I	TGGCCA	1 cut(s)	459
MspA1I	CMGCKG	1 cut(s)	155
MspCI	CTTAAG	1 cut(s)	335
MspI	CCGG	1 cut(s)	248
MspR9I	CCNGG	1 cut(s)	461
MvaI	CCWGG	1 cut(s)	461
MvnI	CGCG	1 cut(s)	598
MwoI	GCNNNNNNNGC	1 cut(s)	618
NdeI	CATATG	1 cut(s)	381
NdeII	GATC	5 cut(s)	27, 36, 106, 147, 543
NlaIII	CATG	2 cut(s)	495, 565
NlaIV	GGNNCC	2 cut(s)	224, 508
NsiI	ATGCAT	1 cut(s)	487
PcsI	WCGNNNNNNNCGW	2 cut(s)	108, 215
PdmI	GAANNNNTTC	1 cut(s)	296
PfeI	GAWTC	1 cut(s)	44
PflMI	CCANNNNNTGG	1 cut(s)	329
PkrI	GCNGC	2 cut(s)	157, 444
Psp6I	CCWGG	1 cut(s)	459
PspGI	CCWGG	1 cut(s)	459
PspN4I	GGNNCC	2 cut(s)	224, 508
PspPI	GGNCC	1 cut(s)	641
PstI	CTGCAG	1 cut(s)	447
PstNI	CAGNNNCTG	1 cut(s)	242
RsaI	GTAC	1 cut(s)	580
RsaNI	GTAC	1 cut(s)	579
RseI	CAYNNNNRTG	2 cut(s)	384, 490
SalI	GTCGAC	1 cut(s)	202
SaqAI	TTAA	3 cut(s)	20, 336, 408
SatI	GCNGC	2 cut(s)	156, 443
Sau3AI	GATC	5 cut(s)	27, 36, 106, 147, 543
Sau96I	GGNCC	1 cut(s)	641
ScrFI	CCNGG	1 cut(s)	461
SduI	GDGCHC	1 cut(s)	511
SfaNI	GCATC	2 cut(s)	472, 494
SfcI	CTRYAG	1 cut(s)	443
SgrDI	CGTCGACG	1 cut(s)	202
SmiMI	CAYNNNNRTG	2 cut(s)	384, 490
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
Sse9I	AATT	3 cut(s)	285, 357, 404
SsiI	CCGC	3 cut(s)	153, 259, 596
SspMI	CTAG	1 cut(s)	653
StyD4I	CCNGG	1 cut(s)	459
StyI	CCWWGG	1 cut(s)	511
TaaI	ACNGT	3 cut(s)	141, 297, 415
TaiI	ACGT	2 cut(s)	183, 209
TaqI	TCGA	4 cut(s)	30, 135, 203, 218
TasI	AATT	3 cut(s)	285, 357, 404
TatI	WGTACW	1 cut(s)	578
TfiI	GAWTC	1 cut(s)	44
Tru1I	TTAA	3 cut(s)	20, 336, 408
Tru9I	TTAA	3 cut(s)	20, 336, 408
TscAI	CASTG	2 cut(s)	261, 452
TseI	GCWGC	2 cut(s)	155, 442
TspDTI	ATGAA	2 cut(s)	17, 305
TspRI	CASTG	2 cut(s)	261, 452
Van91I	CCANNNNNTGG	1 cut(s)	329
Vha464I	CTTAAG	1 cut(s)	335
XapI	RAATTY	1 cut(s)	404
XmiI	GTMKAC	1 cut(s)	203
XmnI	GAANNNNTTC	1 cut(s)	296
XspI	CTAG	1 cut(s)	653
ZraI	GACGTC	2 cut(s)	181, 207
Zsp2I	ATGCAT	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.