Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0007698

Physical Location & Seq

Genomic Coordinates Forward (+)

13522554 .. 13522835

Gene Structure 282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g12900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGAACGCACGAATTCTCTCCTCCCTCACCTCCTCACCTTTCTCTCTCTTCACCTCCTCCTTCTACTTTTCTCTCCGATCGCCGCTGCCAAGCTCACGAACCCTCTCGGGCTCGCCAGGTCCAGCTTCCCGTCCGTGCACGCGAAGCAGCTCGATCAGAGCCTTCAATCTCTTCCCCGAGGAAGACATCAACATCATCGACGGCCCCGATTCCTCGACCGCCGCCGTCGCCGACGCGCCGAGGCTCGTCGAGAAGCCACTCAGGCTCCCCAACCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

94

Amino Acids

10.79

Weight (kDa)

12.0

Isoelectric Point (pI)

91.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10410
fragaria_vesca	FvH4_2g40053 FvH4_5g04771 FvH4_7g18691 FvH4_7g18691
malus_domestica	MD01G1102600.v1.1 MD07G1169500.v1.1
prunus_persica	Prupe.1G099300_v2.0.a1 Prupe.2G208200_v2.0.a1
pyrus_communis	pycom01g12900 pycom01g12910 pycom07g16320
rosa_chinensis	RchiOBHm_Chr1g0362481
rosa_laevigata	RLG00000027645
rosa_multiflora	Rmu_sc0001823.1_g000006 Rmu_sc0007589.1_g000008
rosa_roxburghii	Rroxscaffold_4G00294130
rosa_rugosa	Rorug01G0298200
rosa_samantha	Rh1AG307700 Rh1BG270800 Rh1CG288400 Rh1DG301000
rosa_wichuraiana	Rw0G003470 Rw1G027300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	143, 237
AciI	CCGC	3 cut(s)	84, 220, 223
AcsI	RAATTY	1 cut(s)	13
AgsI	TTSAA	1 cut(s)	167
AjnI	CCWGG	1 cut(s)	116
AluBI	AGCT	3 cut(s)	94, 126, 151
AluI	AGCT	3 cut(s)	94, 126, 151
Alw21I	GWGCWC	1 cut(s)	141
Alw44I	GTGCAC	1 cut(s)	137
Ama87I	CYCGRG	2 cut(s)	107, 177
AoxI	GGCC	1 cut(s)	203
ApaLI	GTGCAC	1 cut(s)	137
ApeKI	GCWGC	2 cut(s)	86, 148
ApoI	RAATTY	1 cut(s)	13
AspLEI	GCGC	1 cut(s)	239
AspS9I	GGNCC	2 cut(s)	120, 204
AsuHPI	GGTGA	3 cut(s)	20, 28, 44
AvaI	CYCGRG	2 cut(s)	107, 177
AvaII	GGWCC	1 cut(s)	120
BaeGI	GKGCMC	1 cut(s)	141
BanII	GRGCYC	1 cut(s)	114
BbsI	GAAGAC	1 cut(s)	190
Bbv12I	GWGCWC	1 cut(s)	141
BbvI	GCAGC	2 cut(s)	73, 160
BceAI	ACGGC	2 cut(s)	210, 218
BciT130I	CCWGG	1 cut(s)	118
BglI	GCCNNNNNGGC	1 cut(s)	263
BisI	GCNGC	4 cut(s)	84, 87, 149, 223
BlsI	GCNGC	4 cut(s)	85, 88, 150, 224
Bme1390I	CCNGG	1 cut(s)	118
Bme18I	GGWCC	1 cut(s)	120
BmeT110I	CYCGRG	2 cut(s)	107, 177
BmgT120I	GGNCC	2 cut(s)	120, 204
BmiI	GGNNCC	2 cut(s)	206, 267
BmrFI	CCNGG	1 cut(s)	118
BpiI	GAAGAC	1 cut(s)	190
BsaJI	CCNNGG	2 cut(s)	178, 240
BsaXI	ACNNNNNCTCC	2 cut(s)	250, 280
BseBI	CCWGG	1 cut(s)	118
BseDI	CCNNGG	2 cut(s)	178, 240
BseMII	CTCAG	1 cut(s)	275
BseRI	GAGGAG	3 cut(s)	11, 23, 47
BseSI	GKGCMC	1 cut(s)	141
BseXI	GCAGC	2 cut(s)	73, 160
Bsh1236I	CGCG	2 cut(s)	143, 237
Bsh1285I	CGRYCG	2 cut(s)	81, 220
BshFI	GGCC	1 cut(s)	205
BsiEI	CGRYCG	2 cut(s)	81, 220
BsiHKAI	GWGCWC	1 cut(s)	141
BsiHKCI	CYCGRG	2 cut(s)	107, 177
BsnI	GGCC	1 cut(s)	205
BsoBI	CYCGRG	2 cut(s)	107, 177
Bsp1286I	GDGCHC	2 cut(s)	114, 141
Bsp143I	GATC	2 cut(s)	78, 154
BspACI	CCGC	3 cut(s)	84, 220, 223
BspANI	GGCC	1 cut(s)	205
BspCNI	CTCAG	1 cut(s)	274
BspFNI	CGCG	2 cut(s)	143, 237
BspLI	GGNNCC	2 cut(s)	206, 267
BssECI	CCNNGG	2 cut(s)	178, 240
BssMI	GATC	2 cut(s)	78, 154
Bst2UI	CCWGG	1 cut(s)	118
Bst6I	CTCTTC	2 cut(s)	54, 177
BstC8I	GCNNGC	2 cut(s)	114, 141
BstDEI	CTNAG	1 cut(s)	261
BstFNI	CGCG	2 cut(s)	143, 237
BstHHI	GCGC	1 cut(s)	239
BstKTI	GATC	2 cut(s)	81, 157
BstMBI	GATC	2 cut(s)	78, 154
BstMCI	CGRYCG	2 cut(s)	81, 220
BstMWI	GCNNNNNNNGC	3 cut(s)	145, 228, 263
BstNI	CCWGG	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	116
BstSLI	GKGCMC	1 cut(s)	141
BstUI	CGCG	2 cut(s)	143, 237
BstV1I	GCAGC	2 cut(s)	73, 160
BstV2I	GAAGAC	1 cut(s)	190
BsuRI	GGCC	1 cut(s)	205
Cac8I	GCNNGC	2 cut(s)	114, 141
CfoI	GCGC	1 cut(s)	239
Cfr13I	GGNCC	2 cut(s)	120, 204
CseI	GACGC	1 cut(s)	243
CviJI	RGCY	9 cut(s)	94, 112, 126, 151, 162, 205, 245, 257, 266
CviKI_1	RGCY	9 cut(s)	94, 112, 126, 151, 162, 205, 245, 257, 266
DdeI	CTNAG	1 cut(s)	261
DpnI	GATC	2 cut(s)	80, 156
DpnII	GATC	2 cut(s)	78, 154
Eam1104I	CTCTTC	2 cut(s)	54, 177
EarI	CTCTTC	2 cut(s)	54, 177
Eco24I	GRGCYC	1 cut(s)	114
Eco47I	GGWCC	1 cut(s)	120
Eco88I	CYCGRG	2 cut(s)	107, 177
EcoRI	GAATTC	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	116
EcoT38I	GRGCYC	1 cut(s)	114
Fnu4HI	GCNGC	4 cut(s)	84, 87, 149, 223
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	4 cut(s)	84, 87, 149, 223
GlaI	GCGC	1 cut(s)	238
GluI	GCNGC	4 cut(s)	84, 87, 149, 223
HaeIII	GGCC	1 cut(s)	205
HgaI	GACGC	1 cut(s)	243
HhaI	GCGC	1 cut(s)	239
Hin6I	GCGC	1 cut(s)	237
HinP1I	GCGC	1 cut(s)	237
HinfI	GANTC	1 cut(s)	210
HphI	GGTGA	3 cut(s)	20, 28, 44
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	2 cut(s)	78, 159
Hpy188III	TCNNGA	2 cut(s)	97, 251
Hpy8I	GTNNAC	1 cut(s)	139
Hpy99I	CGWCG	4 cut(s)	204, 231, 237, 252
HpyAV	CCTTC	2 cut(s)	71, 173
HpyCH4V	TGCA	1 cut(s)	139
HpyF10VI	GCNNNNNNNGC	3 cut(s)	145, 228, 263
HpyF3I	CTNAG	1 cut(s)	261
HspAI	GCGC	1 cut(s)	237
Kzo9I	GATC	2 cut(s)	78, 154
LmnI	GCTCC	1 cut(s)	271
LpnPI	CCDG	4 cut(s)	103, 130, 136, 248
Lsp1109I	GCAGC	2 cut(s)	73, 160
MalI	GATC	2 cut(s)	80, 156
MboI	GATC	2 cut(s)	78, 154
MboII	GAAGA	3 cut(s)	41, 164, 195
MhlI	GDGCHC	2 cut(s)	114, 141
MluCI	AATT	1 cut(s)	13
MspA1I	CMGCKG	1 cut(s)	86
MspR9I	CCNGG	1 cut(s)	118
MvaI	CCWGG	1 cut(s)	118
MvnI	CGCG	2 cut(s)	143, 237
MwoI	GCNNNNNNNGC	3 cut(s)	145, 228, 263
NdeII	GATC	2 cut(s)	78, 154
NlaIV	GGNNCC	2 cut(s)	206, 267
NmeAIII	GCCGAG	1 cut(s)	265
PcsI	WCGNNNNNNNCGW	1 cut(s)	205
PfeI	GAWTC	1 cut(s)	210
PkrI	GCNGC	4 cut(s)	85, 88, 150, 224
Ple19I	CGATCG	1 cut(s)	81
Psp6I	CCWGG	1 cut(s)	116
PspGI	CCWGG	1 cut(s)	116
PspN4I	GGNNCC	2 cut(s)	206, 267
PspPI	GGNCC	2 cut(s)	120, 204
PvuI	CGATCG	1 cut(s)	81
SatI	GCNGC	4 cut(s)	84, 87, 149, 223
Sau3AI	GATC	2 cut(s)	78, 154
Sau96I	GGNCC	2 cut(s)	120, 204
ScrFI	CCNGG	1 cut(s)	118
SduI	GDGCHC	2 cut(s)	114, 141
SetI	ASST	8 cut(s)	33, 41, 57, 96, 122, 128, 153, 277
SinI	GGWCC	1 cut(s)	120
Sse9I	AATT	1 cut(s)	13
SsiI	CCGC	3 cut(s)	84, 220, 223
StyD4I	CCNGG	1 cut(s)	116
TaqI	TCGA	4 cut(s)	153, 199, 216, 250
TasI	AATT	1 cut(s)	13
TauI	GCSGC	2 cut(s)	86, 225
TfiI	GAWTC	1 cut(s)	210
TseI	GCWGC	2 cut(s)	86, 148
TspGWI	ACGGA	1 cut(s)	124
VneI	GTGCAC	1 cut(s)	137
VpaK11BI	GGWCC	1 cut(s)	120
XapI	RAATTY	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.