Rh1CG288400

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0007698
Physical Location & Seq
Forward (+)
56112500 .. 56127038
14539 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG288400.1

Sequence Viewer

Length: 1014 bp
ATGGAGCTCCCGATTTCTCTTCTTCTCGTCTGCACCCTCCTTCTCTCTCCTCTGACCGCCCTCGCCGGAGTCAGCGACCCTCGCGCCTCCGGCCTCGCCAGGTCCAGCTTCCCCTCCGTGCACGCGCAGCAGCTGATCAGAGCCCTCAATCTCTTCCCCGACTCAGATGCCAACATCATCGACGGCGGAGATTCGTCCCCCGTCGCCGCCGGGAAGAGGATCGTCGAGAAGCGGTTCACGCTCCCCAACGTCGTCGGCGAGTCTGGGGTTTCCGTCGAAGACCTCGGCCACCACGCCGGTTACTTCAAGATTGAGCATTCTCACGCCGCCAGGATGTTCTACCTGTTCTTCGAGTCTCGCACCAACAAGAAGGACCCTGTTGTGATATGGCTGACTGGAGGCCCAGGTTGCAGTAGTGAATTGGCTGTGTTCTATGAAAACGGTCCTTTCTCGATTGCGAATAACTTGTCTCTTGTATGGAATGAGTATGGTTGGGATAAGGCATCTAATCTGTTGTATGTTGACCAGCCTATTGGTACTGGATTCAGTTATAGTTCTGACAGACGTGATATTCGTCACTCTGAAGATGGTGTTAGTAACGACCTCTATGACTTCTTACAGGCCTTCTTCACTGAGCATCCTGAGTTGGCAAAGAATGACTTTTACATAACTGGAGAATCATATGCCGGGCACTATATTCCAGCTTTTGCCGCTCGAGTTCACCAAGGAAACAAAGCTAAAGAAGGAATTCATATAAATCTAAAGGGATTTGCCATCGGCAATGGGCTCACTGATCCTGCAATCCAGTATAAAGCATACACAGATTATGCATTGGACAATGGAGTAATCTCGAAAACTGACTACGACCGTATTAACAAAGTTCTTCCTGTTTGCGAAATGGCTATAAAGCTGTGTGGTACTGATGGTACAGTCTCTTGCATGGCTTCATATTTTGTGTGCAATACCATATTCAGTAGCATCCTTGCGCGAGCTGGAGATGTTAATGTAAGATGA

Protein Analysis

337

Amino Acids

36.84

Weight (kDa)

5.55

Isoelectric Point (pI)

44.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 95 - 305 9.3e-85 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 713
AccII CGCG 3 cut(s) 84, 125, 988
AciI CCGC 6 cut(s) 57, 186, 207, 232, 327, 711
AclWI GGATC 2 cut(s) 227, 788
AcoI YGGCCR 1 cut(s) 286
AcsI RAATTY 1 cut(s) 747
AcuI CTGAAG 1 cut(s) 603
AfaI GTAC 3 cut(s) 538, 919, 928
AfiI CCNNNNNNNGG 1 cut(s) 216
AgsI TTSAA 1 cut(s) 307
AjiI CACGTC 1 cut(s) 566
AjnI CCWGG 3 cut(s) 98, 329, 403
AluBI AGCT 7 cut(s) 7, 108, 133, 704, 737, 910, 992
AluI AGCT 7 cut(s) 7, 108, 133, 704, 737, 910, 992
Alw21I GWGCWC 2 cut(s) 9, 123
Alw26I GTCTC 3 cut(s) 360, 474, 937
Alw44I GTGCAC 1 cut(s) 119
AlwI GGATC 2 cut(s) 227, 788
AlwNI CAGNNNCTG 1 cut(s) 133
Ama87I CYCGRG 1 cut(s) 714
AoxI GGCC 4 cut(s) 91, 286, 400, 621
ApaLI GTGCAC 1 cut(s) 119
ApeKI GCWGC 2 cut(s) 127, 130
ApoI RAATTY 1 cut(s) 747
ArsI GACNNNNNNTTYG 4 cut(s) 452, 484, 555, 587
Asp700I GAANNNNTTC 2 cut(s) 233, 747
AspLEI GCGC 3 cut(s) 86, 127, 988
AspS9I GGNCC 4 cut(s) 102, 373, 401, 443
AsuC2I CCSGG 2 cut(s) 211, 688
AsuHPI GGTGA 1 cut(s) 713
AvaI CYCGRG 1 cut(s) 714
AvaII GGWCC 3 cut(s) 102, 373, 443
BaeGI GKGCMC 2 cut(s) 123, 693
BanII GRGCYC 3 cut(s) 9, 145, 789
BbsI GAAGAC 1 cut(s) 285
Bbv12I GWGCWC 2 cut(s) 9, 123
BbvI GCAGC 2 cut(s) 139, 142
BccI CCATC 3 cut(s) 581, 782, 917
BceAI ACGGC 1 cut(s) 199
BcgI CGANNNNNNTGC 2 cut(s) 149, 183
BciT130I CCWGG 3 cut(s) 100, 331, 405
BclI TGATCA 1 cut(s) 135
BcnI CCSGG 2 cut(s) 211, 688
BcoDI GTCTC 3 cut(s) 360, 474, 937
BisI GCNGC 5 cut(s) 128, 131, 207, 327, 711
BlsI GCNGC 5 cut(s) 129, 132, 208, 328, 712
Bme1390I CCNGG 5 cut(s) 100, 211, 331, 405, 688
Bme18I GGWCC 3 cut(s) 102, 373, 443
BmeT110I CYCGRG 1 cut(s) 714
BmgBI CACGTC 1 cut(s) 566
BmgT120I GGNCC 4 cut(s) 102, 373, 401, 443
BmiI GGNNCC 1 cut(s) 375
BmrFI CCNGG 5 cut(s) 100, 211, 331, 405, 688
BmsI GCATC 4 cut(s) 157, 512, 646, 987
BpiI GAAGAC 1 cut(s) 285
BpmI CTGGAG 3 cut(s) 417, 693, 1014
BpuMI CCSGG 2 cut(s) 211, 688
BsaJI CCNNGG 3 cut(s) 283, 403, 724
Bsc4I CCNNNNNNNGG 1 cut(s) 216
Bse118I RCCGGY 1 cut(s) 296
Bse1I ACTGG 4 cut(s) 400, 544, 676, 805
Bse3DI GCAATG 1 cut(s) 787
BseBI CCWGG 3 cut(s) 100, 331, 405
BseDI CCNNGG 3 cut(s) 283, 403, 724
BseGI GGATG 3 cut(s) 339, 637, 978
BseLI CCNNNNNNNGG 1 cut(s) 216
BseMI GCAATG 1 cut(s) 787
BseMII CTCAG 3 cut(s) 177, 624, 633
BseNI ACTGG 4 cut(s) 400, 544, 676, 805
BseRI GAGGAG 1 cut(s) 39
BseSI GKGCMC 2 cut(s) 123, 693
BseXI GCAGC 2 cut(s) 139, 142
BsgI GTGCAG 1 cut(s) 16
Bsh1236I CGCG 3 cut(s) 84, 125, 988
Bsh1285I CGRYCG 1 cut(s) 868
BshFI GGCC 4 cut(s) 93, 288, 402, 623
BsiEI CGRYCG 1 cut(s) 868
BsiHKAI GWGCWC 2 cut(s) 9, 123
BsiHKCI CYCGRG 1 cut(s) 714
BsiSI CCGG 5 cut(s) 66, 90, 210, 297, 687
BslFI GGGAC 1 cut(s) 181
BslI CCNNNNNNNGG 1 cut(s) 216
BsmAI GTCTC 3 cut(s) 360, 474, 937
BsmFI GGGAC 1 cut(s) 181
BsmI GAATGC 1 cut(s) 316
BsnI GGCC 4 cut(s) 93, 288, 402, 623
BsoBI CYCGRG 1 cut(s) 714
Bsp1286I GDGCHC 5 cut(s) 9, 123, 145, 693, 789
Bsp143I GATC 3 cut(s) 135, 219, 793
BspACI CCGC 6 cut(s) 57, 186, 207, 232, 327, 711
BspANI GGCC 4 cut(s) 93, 288, 402, 623
BspCNI CTCAG 3 cut(s) 176, 625, 634
BspFNI CGCG 3 cut(s) 84, 125, 988
BspLI GGNNCC 1 cut(s) 375
BspPI GGATC 2 cut(s) 227, 788
BsrBI CCGCTC 1 cut(s) 713
BsrDI GCAATG 1 cut(s) 787
BsrFI RCCGGY 1 cut(s) 296
BsrI ACTGG 4 cut(s) 400, 544, 676, 805
BssAI RCCGGY 1 cut(s) 296
BssECI CCNNGG 3 cut(s) 283, 403, 724
BssMI GATC 3 cut(s) 135, 219, 793
BssT1I CCWWGG 1 cut(s) 724
Bst2UI CCWGG 3 cut(s) 100, 331, 405
Bst4CI ACNGT 3 cut(s) 443, 869, 931
Bst6I CTCTTC 3 cut(s) 24, 158, 209
BstC8I GCNNGC 2 cut(s) 123, 990
BstDEI CTNAG 3 cut(s) 163, 633, 642
BstF5I GGATG 3 cut(s) 339, 637, 978
BstFNI CGCG 3 cut(s) 84, 125, 988
BstHHI GCGC 3 cut(s) 86, 127, 988
BstKTI GATC 3 cut(s) 138, 222, 796
BstMAI GTCTC 3 cut(s) 360, 474, 937
BstMBI GATC 3 cut(s) 135, 219, 793
BstMCI CGRYCG 1 cut(s) 868
BstMWI GCNNNNNNNGC 6 cut(s) 81, 90, 127, 238, 408, 710
BstNI CCWGG 3 cut(s) 100, 331, 405
BstSCI CCNGG 5 cut(s) 98, 209, 329, 403, 686
BstSLI GKGCMC 2 cut(s) 123, 693
BstUI CGCG 3 cut(s) 84, 125, 988
BstV1I GCAGC 2 cut(s) 139, 142
BstV2I GAAGAC 1 cut(s) 285
BstXI CCANNNNNNTGG 1 cut(s) 533
BsuRI GGCC 4 cut(s) 93, 288, 402, 623
BtrI CACGTC 1 cut(s) 566
BtsCI GGATG 3 cut(s) 339, 637, 978
BtsIMutI CAGTG 2 cut(s) 630, 789
Cac8I GCNNGC 2 cut(s) 123, 990
CaiI CAGNNNCTG 1 cut(s) 133
CfoI GCGC 3 cut(s) 86, 127, 988
Cfr10I RCCGGY 1 cut(s) 296
Cfr13I GGNCC 4 cut(s) 102, 373, 401, 443
Csp6I GTAC 3 cut(s) 537, 918, 927
CviAII CATG 1 cut(s) 940
CviQI GTAC 3 cut(s) 537, 918, 927
DdeI CTNAG 3 cut(s) 163, 633, 642
DpnI GATC 3 cut(s) 137, 221, 795
DpnII GATC 3 cut(s) 135, 219, 793
EaeI YGGCCR 1 cut(s) 286
Eam1104I CTCTTC 3 cut(s) 24, 158, 209
EarI CTCTTC 3 cut(s) 24, 158, 209
EciI GGCGGA 1 cut(s) 201
Ecl136II GAGCTC 1 cut(s) 7
Eco130I CCWWGG 1 cut(s) 724
Eco147I AGGCCT 1 cut(s) 623
Eco24I GRGCYC 3 cut(s) 9, 145, 789
Eco47I GGWCC 3 cut(s) 102, 373, 443
Eco53kI GAGCTC 1 cut(s) 7
Eco57I CTGAAG 1 cut(s) 603
Eco88I CYCGRG 1 cut(s) 714
EcoICRI GAGCTC 1 cut(s) 7
EcoO109I RGGNCCY 1 cut(s) 373
EcoRI GAATTC 1 cut(s) 747
EcoRII CCWGG 3 cut(s) 98, 329, 403
EcoT14I CCWWGG 1 cut(s) 724
EcoT22I ATGCAT 1 cut(s) 832
EcoT38I GRGCYC 3 cut(s) 9, 145, 789
ErhI CCWWGG 1 cut(s) 724
FaeI CATG 1 cut(s) 943
FalI AAGNNNNNCTT 2 cut(s) 644, 676
FaqI GGGAC 1 cut(s) 181
FatI CATG 1 cut(s) 939
FauNDI CATATG 1 cut(s) 682
FbaI TGATCA 1 cut(s) 135
Fnu4HI GCNGC 5 cut(s) 128, 131, 207, 327, 711
FokI GGATG 3 cut(s) 346, 624, 965
FriOI GRGCYC 3 cut(s) 9, 145, 789
Fsp4HI GCNGC 5 cut(s) 128, 131, 207, 327, 711
GlaI GCGC 3 cut(s) 85, 126, 987
GluI GCNGC 5 cut(s) 128, 131, 207, 327, 711
GsuI CTGGAG 3 cut(s) 417, 693, 1014
HaeIII GGCC 4 cut(s) 93, 288, 402, 623
HapII CCGG 5 cut(s) 66, 90, 210, 297, 687
HhaI GCGC 3 cut(s) 86, 127, 988
Hin1II CATG 1 cut(s) 943
Hin6I GCGC 3 cut(s) 84, 125, 986
HinP1I GCGC 3 cut(s) 84, 125, 986
HincII GTYRAC 1 cut(s) 523
HindII GTYRAC 1 cut(s) 523
HinfI GANTC 7 cut(s) 69, 161, 191, 260, 353, 543, 677
HpaII CCGG 5 cut(s) 66, 90, 210, 297, 687
HphI GGTGA 1 cut(s) 713
Hpy166II GTNNAC 4 cut(s) 121, 237, 523, 721
Hpy188I TCNGA 5 cut(s) 54, 140, 166, 559, 583
Hpy188III TCNNGA 6 cut(s) 10, 226, 307, 451, 641, 850
Hpy8I GTNNAC 4 cut(s) 121, 237, 523, 721
Hpy99I CGWCG 6 cut(s) 185, 206, 227, 254, 257, 278
HpyAV CCTTC 4 cut(s) 50, 364, 634, 737
HpyCH4III ACNGT 3 cut(s) 443, 869, 931
HpyCH4IV ACGT 2 cut(s) 249, 565
HpyCH4V TGCA 7 cut(s) 33, 121, 411, 800, 830, 939, 960
HpyF10VI GCNNNNNNNGC 6 cut(s) 81, 90, 127, 238, 408, 710
HpyF3I CTNAG 3 cut(s) 163, 633, 642
HpySE526I ACGT 2 cut(s) 249, 565
Hsp92II CATG 1 cut(s) 943
HspAI GCGC 3 cut(s) 84, 125, 986
Ksp22I TGATCA 1 cut(s) 135
Kzo9I GATC 3 cut(s) 135, 219, 793
LmnI GCTCC 3 cut(s) 4, 12, 246
Lsp1109I GCAGC 2 cut(s) 139, 142
LweI GCATC 4 cut(s) 157, 512, 646, 987
MaeII ACGT 2 cut(s) 249, 565
MaeIII GTNAC 3 cut(s) 299, 575, 596
MalI GATC 3 cut(s) 137, 221, 795
MbiI CCGCTC 1 cut(s) 713
MboI GATC 3 cut(s) 135, 219, 793
MboII GAAGA 9 cut(s) 11, 14, 145, 226, 290, 340, 596, 619, 875
MhlI GDGCHC 5 cut(s) 9, 123, 145, 693, 789
MluCI AATT 2 cut(s) 419, 747
MlyI GAGTC 4 cut(s) 78, 155, 269, 362
Mph1103I ATGCAT 1 cut(s) 832
MroXI GAANNNNTTC 2 cut(s) 233, 747
MseI TTAA 2 cut(s) 873, 1002
MspA1I CMGCKG 1 cut(s) 133
MspI CCGG 5 cut(s) 66, 90, 210, 297, 687
MspR9I CCNGG 5 cut(s) 100, 211, 331, 405, 688
Mva1269I GAATGC 1 cut(s) 316
MvaI CCWGG 3 cut(s) 100, 331, 405
MvnI CGCG 3 cut(s) 84, 125, 988
MwoI GCNNNNNNNGC 6 cut(s) 81, 90, 127, 238, 408, 710
NciI CCSGG 2 cut(s) 211, 688
NdeI CATATG 1 cut(s) 682
NdeII GATC 3 cut(s) 135, 219, 793
NlaIII CATG 1 cut(s) 943
NlaIV GGNNCC 1 cut(s) 375
NmeAIII GCCGAG 1 cut(s) 264
NmuCI GTSAC 1 cut(s) 575
NsiI ATGCAT 1 cut(s) 832
PaeR7I CTCGAG 1 cut(s) 714
PceI AGGCCT 1 cut(s) 623
PcsI WCGNNNNNNNCGW 2 cut(s) 255, 571
PctI GAATGC 1 cut(s) 316
PdmI GAANNNNTTC 2 cut(s) 233, 747
PfeI GAWTC 3 cut(s) 191, 543, 677
PkrI GCNGC 5 cut(s) 129, 132, 208, 328, 712
PleI GAGTC 4 cut(s) 77, 155, 268, 361
PpsI GAGTC 4 cut(s) 77, 155, 268, 361
PpuMI RGGWCCY 1 cut(s) 373
Psp124BI GAGCTC 1 cut(s) 9
Psp5II RGGWCCY 1 cut(s) 373
Psp6I CCWGG 3 cut(s) 98, 329, 403
PspGI CCWGG 3 cut(s) 98, 329, 403
PspN4I GGNNCC 1 cut(s) 375
PspPI GGNCC 4 cut(s) 102, 373, 401, 443
PspPPI RGGWCCY 1 cut(s) 373
PspXI VCTCGAGB 1 cut(s) 714
PstNI CAGNNNCTG 1 cut(s) 133
PvuII CAGCTG 1 cut(s) 133
RsaI GTAC 3 cut(s) 538, 919, 928
RsaNI GTAC 3 cut(s) 537, 918, 927
SacI GAGCTC 1 cut(s) 9
SaqAI TTAA 2 cut(s) 873, 1002
SatI GCNGC 5 cut(s) 128, 131, 207, 327, 711
Sau3AI GATC 3 cut(s) 135, 219, 793
Sau96I GGNCC 4 cut(s) 102, 373, 401, 443
SchI GAGTC 4 cut(s) 78, 155, 269, 362
ScrFI CCNGG 5 cut(s) 100, 211, 331, 405, 688
SduI GDGCHC 5 cut(s) 9, 123, 145, 693, 789
SfaNI GCATC 4 cut(s) 157, 512, 646, 987
Sfr274I CTCGAG 1 cut(s) 714
SinI GGWCC 3 cut(s) 102, 373, 443
SlaI CTCGAG 1 cut(s) 714
SmlI CTYRAG 1 cut(s) 714
SmoI CTYRAG 1 cut(s) 714
Sse9I AATT 2 cut(s) 419, 747
SseBI AGGCCT 1 cut(s) 623
SsiI CCGC 6 cut(s) 57, 186, 207, 232, 327, 711
SstI GAGCTC 1 cut(s) 9
StuI AGGCCT 1 cut(s) 623
StyD4I CCNGG 5 cut(s) 98, 209, 329, 403, 686
StyI CCWWGG 1 cut(s) 724
TaaI ACNGT 3 cut(s) 443, 869, 931
TaiI ACGT 2 cut(s) 252, 568
TaqI TCGA 7 cut(s) 180, 225, 276, 351, 452, 715, 851
TasI AATT 2 cut(s) 419, 747
TauI GCSGC 3 cut(s) 209, 329, 713
TfiI GAWTC 3 cut(s) 191, 543, 677
Tru1I TTAA 2 cut(s) 873, 1002
Tru9I TTAA 2 cut(s) 873, 1002
TscAI CASTG 2 cut(s) 637, 796
TseFI GTSAC 1 cut(s) 575
TseI GCWGC 2 cut(s) 127, 130
Tsp45I GTSAC 1 cut(s) 575
TspDTI ATGAA 3 cut(s) 450, 740, 936
TspGWI ACGGA 2 cut(s) 106, 262
TspRI CASTG 2 cut(s) 637, 796
VneI GTGCAC 1 cut(s) 119
VpaK11BI GGWCC 3 cut(s) 102, 373, 443
XapI RAATTY 1 cut(s) 747
XhoI CTCGAG 1 cut(s) 714
XmnI GAANNNNTTC 2 cut(s) 233, 747
Zsp2I ATGCAT 1 cut(s) 832
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.