Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0011529

Physical Location & Seq

Genomic Coordinates Reverse (-)

28928119 .. 28931804

Gene Structure 3686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g40640.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1554 bp

ATGGCGGATGAAGCTTTAAGGGTGATGATGCCTAATCCGAGAAGGCCTCACTTCTTTGCCTTCTTCTCTGCTGATTTGAGCTCAGACCGACTGAAAATACCTGAGAGGTTTATGATTCACATGGAAGGCAGAACATCCGGAGTGGTTGTGTTGTCTGGACCTAGCGGGAATGTGTGGAATGTTCACTTGATCGAACAGAATGGTGATTTGTTCTTCCATTATGGGTGGCCGGCATTTGTGAGAGACCATTCCCTAGAATGTGGTGACTTCTTGATTTTCAGATATGATGGCGAGTTGCATTTCACTGTGCAAGTTTTTGATCAAACTGCGTGTGAGAAAGAAGCCGCGTTTCATACCCGATGTGGCCAAAGTTCTAGCTACTTTGAGAAACTTGTCGGACGGAAAAGGGCCAGGGAGGAAGGATGTGGACTTGACAGGTTATTTGAAGAATCGACTTCTTCCCAGCATACAAAGCCTTATGAAAATCCTGGTTTGGATGTAGTCATATTCAAAGCAAAGCAAGCCATCCAAAATAGTTTGAATGATAGAAATTCTATGCAGATAACTCCGGCACATGAAGTAGCTCAATCATTTAGCTCCTCTAATCCTTATTTTCTGAGAATCATGAAAAATTTCAACATCAGTGGTTCATATACTTTGAACATTCCATATAAATTTTCAGTGGCACATCTACCAAACTGTAAAGTAAAGATTGTCCTTCTGAATTTGAAAGGAGAAAGTTGGACTGTCAATTCTGTGCCAACTACAAGAGTGCATACAAGTCATACTCTCTGTGGAGGATGGATGGCTTTTGTCCGGTATAATGACATAAAGCTAGGGGATATCTGTGTTTTTGAACTTGTACGCGAGTGTGAATTTCGTGTCCATATTCAAACTGGAGAATCATCTAGTAGGTTGTGTGCTCCGATAACTTTGAAAGGCTTGTCAAAGAAAGCCAAGGGGAACTCTTCTAAAGTCCATACGAAGAGCCTAAGGAAGATAGAGATGGCTGAGACAAGGAAACATGGAAACACATCAAAATCTATTGCCAAAGGCGCACTTTCCTCTCAGTCCAAAGCAGCCAGTAAAAAGTTGGCTACTCGCAGGAAAAAAACTGTTGAGGATGACCAAGGGTCAAAAGCTGAGTTAAGAATGAGGTTGTCACTTGTCGAAGAAAAAGCAGCTCAATCTTTCACTTCTTGCTTCCCAAGTTTTGTGAAGATCATGAAGAAGTTCAATATCAGTGGTTCATATACTTTGAAAATCCCATACCAGTTTTCAACAGAACATCTACCCAACTTCAAAACAGAGATCGTGCTTCAAAATTCAAAAGGGGAAAGTTGGACCGTGAACTCTGTTCCAGACTCAAAAGGGCGAGTGGTGCATACGTTCTGTGGTGGGTGGATGGCATTTGTACGTGGAAATAATATCAACATTGGAGATATCTGCATTTTTGAACTTGTTGGTAAGCGTGAAATGCGAGTGCACATATCTGGTGCTGATAAAAATGGCTTTGATCATCAAGCTGGAGAAGCAACGACTAATGCAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

518

Amino Acids

58.11

Weight (kDa)

9.34

Isoelectric Point (pI)

36.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	19 - 108	4.5e-17	B3 DNA binding domain
B3	PF02362	206 - 297	1.2e-13	B3 DNA binding domain
B3	PF02362	405 - 498	3.6e-15	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011529)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40640
malus_domestica	MD08G1039600.v1.1 MD15G1034200.v1.1
prunus_persica	Prupe.1G388200_v2.0.a1 Prupe.1G388200_v2.0.a1
pyrus_communis	pycom05g03900 pycom08g03170 pycom13g02130 pycom15g03150
rosa_chinensis	RchiOBHm_Chr6g0300031
rosa_laevigata	RLG00000011371
rosa_multiflora	Rmu_co8370125.1_g000001 Rmu_sc0010665.1_g000002
rosa_roxburghii	Rroxscaffold_7G00168180
rosa_rugosa	Rorug06G0293700
rosa_samantha	Rh6AG405300 Rh6BG413600 Rh6CG420700 Rh6DG406300
rosa_wichuraiana	Rw6G035470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	347, 867
AccIII	TCCGGA	1 cut(s)	137
AciI	CCGC	3 cut(s)	5, 165, 345
AcoI	YGGCCR	2 cut(s)	227, 364
AcsI	RAATTY	6 cut(s)	550, 631, 674, 724, 875, 1324
AfaI	GTAC	2 cut(s)	864, 1416
AhdI	GACNNNNNGTC	1 cut(s)	1132
AjnI	CCWGG	2 cut(s)	410, 487
AluBI	AGCT	9 cut(s)	14, 81, 378, 584, 597, 835, 1142, 1184, 1526
AluI	AGCT	9 cut(s)	14, 81, 378, 584, 597, 835, 1142, 1184, 1526
Alw21I	GWGCWC	3 cut(s)	83, 925, 1488
Alw26I	GTCTC	2 cut(s)	237, 1007
Alw44I	GTGCAC	1 cut(s)	1484
Aor13HI	TCCGGA	1 cut(s)	137
AoxI	GGCC	4 cut(s)	44, 227, 364, 408
ApaLI	GTGCAC	1 cut(s)	1484
ApeKI	GCWGC	2 cut(s)	1079, 1181
ApoI	RAATTY	6 cut(s)	550, 631, 674, 724, 875, 1324
ArsI	GACNNNNNNTTYG	2 cut(s)	425, 457
Asp700I	GAANNNNTTC	2 cut(s)	632, 1232
AspLEI	GCGC	1 cut(s)	1058
AspS9I	GGNCC	3 cut(s)	158, 408, 1344
AsuHPI	GGTGA	3 cut(s)	34, 215, 275
AvaII	GGWCC	2 cut(s)	158, 1344
AxyI	CCTNAGG	1 cut(s)	992
BaeGI	GKGCMC	1 cut(s)	1488
BalI	TGGCCA	1 cut(s)	366
BanII	GRGCYC	1 cut(s)	83
Bbv12I	GWGCWC	3 cut(s)	83, 925, 1488
BbvI	GCAGC	2 cut(s)	1091, 1193
BccI	CCATC	6 cut(s)	281, 533, 795, 799, 1000, 1399
BciT130I	CCWGG	2 cut(s)	412, 489
BclI	TGATCA	2 cut(s)	319, 1516
BcoDI	GTCTC	2 cut(s)	237, 1007
BfaI	CTAG	5 cut(s)	162, 254, 375, 836, 909
BisI	GCNGC	3 cut(s)	345, 1080, 1182
BlsI	GCNGC	3 cut(s)	346, 1081, 1183
Bme1390I	CCNGG	2 cut(s)	412, 489
Bme18I	GGWCC	2 cut(s)	158, 1344
BmeRI	GACNNNNNGTC	1 cut(s)	1132
BmgT120I	GGNCC	3 cut(s)	158, 408, 1344
BmrFI	CCNGG	2 cut(s)	412, 489
BmsI	GCATC	1 cut(s)	18
BplI	GAGNNNNNCTC	2 cut(s)	31, 63
BpmI	CTGGAG	2 cut(s)	918, 1548
BsaAI	YACGTR	1 cut(s)	1418
BsaI	GGTCTC	1 cut(s)	237
BsaJI	CCNNGG	3 cut(s)	411, 957, 1129
BsaWI	WCCGGW	2 cut(s)	137, 816
BsaXI	ACNNNNNCTCC	2 cut(s)	132, 162
Bse118I	RCCGGY	1 cut(s)	229
Bse1I	ACTGG	3 cut(s)	901, 1083, 1273
Bse21I	CCTNAGG	1 cut(s)	992
BseAI	TCCGGA	1 cut(s)	137
BseBI	CCWGG	2 cut(s)	412, 489
BseDI	CCNNGG	3 cut(s)	411, 957, 1129
BseGI	GGATG	9 cut(s)	13, 134, 428, 502, 525, 806, 810, 1129, 1410
BseMII	CTCAG	6 cut(s)	93, 96, 608, 1002, 1082, 1134
BseNI	ACTGG	3 cut(s)	901, 1083, 1273
BseRI	GAGGAG	1 cut(s)	589
BseSI	GKGCMC	1 cut(s)	1488
BseXI	GCAGC	2 cut(s)	1091, 1193
BseYI	CCCAGC	1 cut(s)	462
Bsh1236I	CGCG	2 cut(s)	347, 867
BshFI	GGCC	4 cut(s)	46, 229, 366, 410
BsiHKAI	GWGCWC	3 cut(s)	83, 925, 1488
BsiSI	CCGG	4 cut(s)	138, 230, 569, 817
BsmAI	GTCTC	2 cut(s)	237, 1007
BsnI	GGCC	4 cut(s)	46, 229, 366, 410
Bso31I	GGTCTC	1 cut(s)	237
Bsp1286I	GDGCHC	3 cut(s)	83, 925, 1488
Bsp13I	TCCGGA	1 cut(s)	137
Bsp143I	GATC	5 cut(s)	189, 319, 1221, 1311, 1516
BspACI	CCGC	3 cut(s)	5, 165, 345
BspANI	GGCC	4 cut(s)	46, 229, 366, 410
BspCNI	CTCAG	6 cut(s)	94, 95, 609, 1003, 1081, 1135
BspEI	TCCGGA	1 cut(s)	137
BspFNI	CGCG	2 cut(s)	347, 867
BspHI	TCATGA	2 cut(s)	624, 1224
BspQI	GCTCTTC	1 cut(s)	980
BspTNI	GGTCTC	1 cut(s)	237
BsrFI	RCCGGY	1 cut(s)	229
BsrI	ACTGG	3 cut(s)	901, 1083, 1273
BssAI	RCCGGY	1 cut(s)	229
BssECI	CCNNGG	3 cut(s)	411, 957, 1129
BssMI	GATC	5 cut(s)	189, 319, 1221, 1311, 1516
BssT1I	CCWWGG	2 cut(s)	957, 1129
Bst2UI	CCWGG	2 cut(s)	412, 489
Bst4CI	ACNGT	5 cut(s)	307, 701, 748, 1117, 1348
Bst6I	CTCTTC	2 cut(s)	973, 980
BstBAI	YACGTR	1 cut(s)	1418
BstC8I	GCNNGC	2 cut(s)	231, 522
BstDEI	CTNAG	7 cut(s)	82, 102, 617, 992, 1011, 1068, 1143
BstF5I	GGATG	9 cut(s)	13, 134, 428, 502, 525, 806, 810, 1129, 1410
BstFNI	CGCG	2 cut(s)	347, 867
BstHHI	GCGC	1 cut(s)	1058
BstKTI	GATC	5 cut(s)	192, 322, 1224, 1314, 1519
BstMAI	GTCTC	2 cut(s)	237, 1007
BstMBI	GATC	5 cut(s)	189, 319, 1221, 1311, 1516
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 472, 521, 1055, 1381, 1477, 1532
BstNI	CCWGG	2 cut(s)	412, 489
BstSCI	CCNGG	2 cut(s)	410, 487
BstSLI	GKGCMC	1 cut(s)	1488
BstUI	CGCG	2 cut(s)	347, 867
BstV1I	GCAGC	2 cut(s)	1091, 1193
Bsu36I	CCTNAGG	1 cut(s)	992
BsuRI	GGCC	4 cut(s)	46, 229, 366, 410
BtsCI	GGATG	9 cut(s)	13, 134, 428, 502, 525, 806, 810, 1129, 1410
BtsI	GCAGTG	1 cut(s)	1554
BtsIMutI	CAGTG	5 cut(s)	303, 649, 687, 1249, 1554
Cac8I	GCNNGC	2 cut(s)	231, 522
CciI	TCATGA	2 cut(s)	624, 1224
CfoI	GCGC	1 cut(s)	1058
Cfr10I	RCCGGY	1 cut(s)	229
Cfr13I	GGNCC	3 cut(s)	158, 408, 1344
Csp6I	GTAC	2 cut(s)	863, 1415
CspCI	CAANNNNNGTGG	4 cut(s)	625, 660, 1225, 1260
CviAII	CATG	5 cut(s)	121, 575, 625, 1025, 1225
CviQI	GTAC	2 cut(s)	863, 1415
DdeI	CTNAG	7 cut(s)	82, 102, 617, 992, 1011, 1068, 1143
DpnI	GATC	5 cut(s)	191, 321, 1223, 1313, 1518
DpnII	GATC	5 cut(s)	189, 319, 1221, 1311, 1516
DriI	GACNNNNNGTC	1 cut(s)	1132
EaeI	YGGCCR	2 cut(s)	227, 364
Eam1104I	CTCTTC	2 cut(s)	973, 980
Eam1105I	GACNNNNNGTC	1 cut(s)	1132
EarI	CTCTTC	2 cut(s)	973, 980
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	81
Eco130I	CCWWGG	2 cut(s)	957, 1129
Eco147I	AGGCCT	1 cut(s)	46
Eco24I	GRGCYC	1 cut(s)	83
Eco31I	GGTCTC	1 cut(s)	237
Eco32I	GATATC	2 cut(s)	844, 1444
Eco47I	GGWCC	2 cut(s)	158, 1344
Eco53kI	GAGCTC	1 cut(s)	81
Eco81I	CCTNAGG	1 cut(s)	992
EcoICRI	GAGCTC	1 cut(s)	81
EcoRII	CCWGG	2 cut(s)	410, 487
EcoRV	GATATC	2 cut(s)	844, 1444
EcoT14I	CCWWGG	2 cut(s)	957, 1129
EcoT38I	GRGCYC	1 cut(s)	83
ErhI	CCWWGG	2 cut(s)	957, 1129
FaeI	CATG	5 cut(s)	124, 578, 628, 1028, 1228
FalI	AAGNNNNNCTT	2 cut(s)	1044, 1076
FatI	CATG	5 cut(s)	120, 574, 624, 1024, 1224
FauI	CCCGC	1 cut(s)	158
FbaI	TGATCA	2 cut(s)	319, 1516
Fnu4HI	GCNGC	3 cut(s)	345, 1080, 1182
FokI	GGATG	9 cut(s)	20, 121, 435, 509, 512, 813, 817, 1136, 1417
FriOI	GRGCYC	1 cut(s)	83
Fsp4HI	GCNGC	3 cut(s)	345, 1080, 1182
FspBI	CTAG	5 cut(s)	162, 254, 375, 836, 909
GlaI	GCGC	1 cut(s)	1057
GluI	GCNGC	3 cut(s)	345, 1080, 1182
GsaI	CCCAGC	1 cut(s)	466
GsuI	CTGGAG	2 cut(s)	918, 1548
HaeIII	GGCC	4 cut(s)	46, 229, 366, 410
HapII	CCGG	4 cut(s)	138, 230, 569, 817
HhaI	GCGC	1 cut(s)	1058
Hin1II	CATG	5 cut(s)	124, 578, 628, 1028, 1228
Hin6I	GCGC	1 cut(s)	1056
HinP1I	GCGC	1 cut(s)	1056
HindIII	AAGCTT	1 cut(s)	12
HinfI	GANTC	5 cut(s)	115, 449, 621, 902, 1364
HpaII	CCGG	4 cut(s)	138, 230, 569, 817
HphI	GGTGA	3 cut(s)	34, 215, 275
Hpy166II	GTNNAC	4 cut(s)	184, 428, 1351, 1486
Hpy188I	TCNGA	7 cut(s)	39, 85, 281, 398, 618, 723, 927
Hpy188III	TCNNGA	6 cut(s)	138, 156, 271, 625, 1225, 1361
Hpy8I	GTNNAC	4 cut(s)	184, 428, 1351, 1486
HpyAV	CCTTC	5 cut(s)	36, 70, 119, 413, 728
HpyCH4III	ACNGT	5 cut(s)	307, 701, 748, 1117, 1348
HpyCH4IV	ACGT	2 cut(s)	1388, 1417
HpyCH4V	TGCA	8 cut(s)	298, 310, 559, 775, 1384, 1449, 1486, 1547
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 472, 521, 1055, 1381, 1477, 1532
HpyF3I	CTNAG	7 cut(s)	82, 102, 617, 992, 1011, 1068, 1143
HpySE526I	ACGT	2 cut(s)	1388, 1417
Hsp92II	CATG	5 cut(s)	124, 578, 628, 1028, 1228
HspAI	GCGC	1 cut(s)	1056
Kpn2I	TCCGGA	1 cut(s)	137
KroI	GCCGGC	1 cut(s)	229
KroNI	GCCGGC	1 cut(s)	231
Ksp22I	TGATCA	2 cut(s)	319, 1516
Kzo9I	GATC	5 cut(s)	189, 319, 1221, 1311, 1516
LguI	GCTCTTC	1 cut(s)	980
LmnI	GCTCC	2 cut(s)	602, 928
Lsp1109I	GCAGC	2 cut(s)	1091, 1193
LweI	GCATC	1 cut(s)	18
MaeI	CTAG	5 cut(s)	162, 254, 375, 836, 909
MaeII	ACGT	2 cut(s)	1388, 1417
MaeIII	GTNAC	2 cut(s)	263, 1161
MalI	GATC	5 cut(s)	191, 321, 1223, 1313, 1518
MboI	GATC	5 cut(s)	189, 319, 1221, 1311, 1516
MhlI	GDGCHC	3 cut(s)	83, 925, 1488
MlsI	TGGCCA	1 cut(s)	366
MluCI	AATT	7 cut(s)	550, 631, 674, 724, 751, 875, 1324
MluNI	TGGCCA	1 cut(s)	366
MlyI	GAGTC	1 cut(s)	1358
MmeI	TCCRAC	3 cut(s)	376, 722, 1322
MnlI	CCTC	8 cut(s)	57, 99, 409, 610, 791, 1075, 1114, 1149
Mox20I	TGGCCA	1 cut(s)	366
MroI	TCCGGA	1 cut(s)	137
MroNI	GCCGGC	1 cut(s)	229
MroXI	GAANNNNTTC	2 cut(s)	632, 1232
MscI	TGGCCA	1 cut(s)	366
MseI	TTAA	2 cut(s)	17, 1148
Msp20I	TGGCCA	1 cut(s)	366
MspI	CCGG	4 cut(s)	138, 230, 569, 817
MspR9I	CCNGG	2 cut(s)	412, 489
MvaI	CCWGG	2 cut(s)	412, 489
MvnI	CGCG	2 cut(s)	347, 867
MwoI	GCNNNNNNNGC	7 cut(s)	11, 472, 521, 1055, 1381, 1477, 1532
NaeI	GCCGGC	1 cut(s)	231
NdeII	GATC	5 cut(s)	189, 319, 1221, 1311, 1516
NgoMIV	GCCGGC	1 cut(s)	229
NlaIII	CATG	5 cut(s)	124, 578, 628, 1028, 1228
NmuCI	GTSAC	2 cut(s)	263, 1161
PagI	TCATGA	2 cut(s)	624, 1224
PceI	AGGCCT	1 cut(s)	46
PciSI	GCTCTTC	1 cut(s)	980
PdiI	GCCGGC	1 cut(s)	231
PdmI	GAANNNNTTC	2 cut(s)	632, 1232
PfeI	GAWTC	4 cut(s)	115, 449, 621, 902
PkrI	GCNGC	3 cut(s)	346, 1081, 1183
PleI	GAGTC	1 cut(s)	1358
PpsI	GAGTC	1 cut(s)	1358
Ppu21I	YACGTR	1 cut(s)	1418
Psp124BI	GAGCTC	1 cut(s)	83
Psp6I	CCWGG	2 cut(s)	410, 487
PspFI	CCCAGC	1 cut(s)	462
PspGI	CCWGG	2 cut(s)	410, 487
PspPI	GGNCC	3 cut(s)	158, 408, 1344
RsaI	GTAC	2 cut(s)	864, 1416
RsaNI	GTAC	2 cut(s)	863, 1415
SacI	GAGCTC	1 cut(s)	83
SapI	GCTCTTC	1 cut(s)	980
SaqAI	TTAA	2 cut(s)	17, 1148
SatI	GCNGC	3 cut(s)	345, 1080, 1182
Sau3AI	GATC	5 cut(s)	189, 319, 1221, 1311, 1516
Sau96I	GGNCC	3 cut(s)	158, 408, 1344
SchI	GAGTC	1 cut(s)	1358
ScrFI	CCNGG	2 cut(s)	412, 489
SduI	GDGCHC	3 cut(s)	83, 925, 1488
SfaNI	GCATC	1 cut(s)	18
SinI	GGWCC	2 cut(s)	158, 1344
Sse9I	AATT	7 cut(s)	550, 631, 674, 724, 751, 875, 1324
SseBI	AGGCCT	1 cut(s)	46
SsiI	CCGC	3 cut(s)	5, 165, 345
SspMI	CTAG	5 cut(s)	162, 254, 375, 836, 909
SstI	GAGCTC	1 cut(s)	83
StuI	AGGCCT	1 cut(s)	46
StyD4I	CCNGG	2 cut(s)	410, 487
StyI	CCWWGG	2 cut(s)	957, 1129
TaaI	ACNGT	5 cut(s)	307, 701, 748, 1117, 1348
TaiI	ACGT	2 cut(s)	1391, 1420
TaqI	TCGA	3 cut(s)	192, 452, 1170
TaqII	GACCGA	1 cut(s)	102
TasI	AATT	7 cut(s)	550, 631, 674, 724, 751, 875, 1324
TauI	GCSGC	1 cut(s)	347
TfiI	GAWTC	4 cut(s)	115, 449, 621, 902
Tru1I	TTAA	2 cut(s)	17, 1148
Tru9I	TTAA	2 cut(s)	17, 1148
TscAI	CASTG	5 cut(s)	310, 649, 687, 1249, 1554
TseFI	GTSAC	2 cut(s)	263, 1161
TseI	GCWGC	2 cut(s)	1079, 1181
Tsp45I	GTSAC	2 cut(s)	263, 1161
TspDTI	ATGAA	8 cut(s)	24, 341, 495, 591, 639, 641, 1239, 1241
TspGWI	ACGGA	1 cut(s)	415
TspRI	CASTG	5 cut(s)	310, 649, 687, 1249, 1554
VneI	GTGCAC	1 cut(s)	1484
VpaK11BI	GGWCC	2 cut(s)	158, 1344
XapI	RAATTY	6 cut(s)	550, 631, 674, 724, 875, 1324
XcmI	CCANNNNNNNNNTGG	2 cut(s)	893, 1090
XmnI	GAANNNNTTC	2 cut(s)	632, 1232
XspI	CTAG	5 cut(s)	162, 254, 375, 836, 909

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.