Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0011529

Physical Location & Seq

Genomic Coordinates Reverse (-)

9081491 .. 9085253

Gene Structure 3763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00168180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1581 bp

ATGGCGGAAGGAGCTTTAAAGGTGATGCCTAATGCGAGAAGGCCTCACTTCTTTGCCTTCTTTTCTGCTGATTTGAGCTCAGAGCGACTGTGCAATGTGATGTTGCAGAAAATACCAGAGAGGTTTATGATTCACATGGAAGGGAGAACATCTGGAATAGTTGTATTGTCTGGTCCTAGCGGGAATGCATGGAATGTTCACTTGATTGAACAAAATGGTGATTTGTTCTTCCATTATGGGTGGCCGGCATTTGTAAGAGACCATTCCCTAGAATGTGGTGACTTCTTGATTTTCAGATATGATGGCGAGTTGCGTTTCACTGTGCAAATTTTTGATCAAACTGCGTGTGAGAAAGAAGCCGCATTTCATTCCCAATGTGGCCAAAGTTCTAGCTACTTTGAAAAACTTATTGGACGGAAGAGGGCCAGGGAGGAAGGATGTGGGCTTGACAGGCTGCTATTTGAAGAATCGACTTCTTCCCAGCAATCAAAGACATATGAAAATCCTGGTTTGGATGTTGTCATATACAAAGCAAAGCAAGCTATCCAGAATAATTTGAATGATAGAGTTTGCATGCAGATATCTTCGGCACATGAAGTAGCTCAATCATTTAGCTCCTCTAATCCTTATTTTCTGAGAATCATGAAAAGTTTCAACATTAGTGGTTCATATACTTTGAATATTCCATATAAATTTTCAGTGGCACATCTACCAAACTGTAAAGTAAAGATTGTCCTTCTAAACTTGAAAGGAGAAAGTTGGACCGTCAATTCTGTGCCGACCACAAGAGTGCATACAAGTCATACTCTTTGTGGAGGATGGATGGCTTTTGTCCGTTATAATGACATAAAGCTAGGAGATATCTGCATTTTTGAACTTGTGCGGGAGTGTGAATTTCGTGTCCATATTCAAACTGGAGAAACATCTAGTAGGTTATGTGCCGGGCTAGCTTTGAAAGGTTTGTCAAAGAAAGTGAAGGGGAACTCTCCTAAAGTCCATACAAAGAGCCTAAGGAAGATAGAGATGTCTGAAACAAGGAAACACGGAAGCACATCAAAATCTATTGCCAAAGGCGCATCTCAGTCAAAAGCAGCTAGTAAAAAGTTGGGTAAGACAGCCACTCGCAGGAAAAAAAGTGTTGATGATGAACTAGGGTCAAAAGCTGAGTTAAGAATGAGGTTAACACTTGATGAAGAAAAAGCAGCTCGGTCTTTCACTTCTTGCTTCCCAAATTTTGTGAAGATCATGAAGAAGTTCAATATCAGTGGTTCATATACATTGAAAATCCCATACCAGTTTTCCACAGAACATCTACCCAACTATAAAACAGAGATCGTGCTTCGAAATTCAAAGGGGGAATGTTGGACTGTGAACTCTGTTCCAGACTCGAAAGGGCGAGTGGTGCATACTTTCTGTGGTGGGTGGATGGCATTTGTACGTGGAAATGATGTGAACATTGGAGATATCTGCATTTTTGAACTTGTTGGTAAGCGAGAGATGCGAGTGCATATTTCTGGCGCTGATAAAAATGGGTTTGATCATCAAGGTGGAGAAGCAACGACTAATGCAGAGTATAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

526

Amino Acids

59.09

Weight (kDa)

9.26

Isoelectric Point (pI)

40.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	37 - 113	1.7e-14	B3 DNA binding domain
B3	PF02362	219 - 303	3.8e-13	B3 DNA binding domain
B3	PF02362	412 - 505	8e-14	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011529)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40640
malus_domestica	MD08G1039600.v1.1 MD15G1034200.v1.1
prunus_persica	Prupe.1G388200_v2.0.a1 Prupe.1G388200_v2.0.a1
pyrus_communis	pycom05g03900 pycom08g03170 pycom13g02130 pycom15g03150
rosa_chinensis	RchiOBHm_Chr6g0300031
rosa_laevigata	RLG00000011371
rosa_multiflora	Rmu_co8370125.1_g000001 Rmu_sc0010665.1_g000002
rosa_roxburghii	Rroxscaffold_7G00168180
rosa_rugosa	Rorug06G0293700
rosa_samantha	Rh6AG405300 Rh6BG413600 Rh6CG420700 Rh6DG406300
rosa_wichuraiana	Rw6G035470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	840
AciI	CCGC	4 cut(s)	5, 180, 360, 883
AcoI	YGGCCR	2 cut(s)	242, 379
AcsI	RAATTY	5 cut(s)	327, 692, 893, 1231, 1345
AfaI	GTAC	1 cut(s)	1437
AfiI	CCNNNNNNNGG	1 cut(s)	1125
AjnI	CCWGG	2 cut(s)	425, 505
AjuI	GAANNNNNNNTTGG	2 cut(s)	393, 425
AleI	CACNNNNGTG	1 cut(s)	788
Alw21I	GWGCWC	1 cut(s)	80
Alw26I	GTCTC	1 cut(s)	252
AoxI	GGCC	4 cut(s)	41, 242, 379, 423
ApeKI	GCWGC	3 cut(s)	454, 1091, 1202
ApoI	RAATTY	5 cut(s)	327, 692, 893, 1231, 1345
Asp700I	GAANNNNTTC	2 cut(s)	650, 1253
AspLEI	GCGC	2 cut(s)	1076, 1520
AspS9I	GGNCC	3 cut(s)	173, 423, 762
AsuC2I	CCSGG	1 cut(s)	943
AsuHPI	GGTGA	3 cut(s)	34, 230, 290
AsuII	TTCGAA	1 cut(s)	1342
AsuNHI	GCTAGC	1 cut(s)	946
AvaII	GGWCC	2 cut(s)	173, 762
AxyI	CCTNAGG	1 cut(s)	1010
BalI	TGGCCA	1 cut(s)	381
BanII	GRGCYC	1 cut(s)	80
Bbv12I	GWGCWC	1 cut(s)	80
BbvI	GCAGC	3 cut(s)	441, 1103, 1214
BccI	CCATC	4 cut(s)	296, 813, 817, 1420
BciT130I	CCWGG	2 cut(s)	427, 507
BclI	TGATCA	2 cut(s)	334, 1537
BcnI	CCSGG	1 cut(s)	943
BcoDI	GTCTC	1 cut(s)	252
BfaI	CTAG	9 cut(s)	177, 269, 390, 854, 927, 947, 1095, 1151, 1579
BfoI	RGCGCY	1 cut(s)	1521
BisI	GCNGC	4 cut(s)	360, 455, 1092, 1203
BlsI	GCNGC	4 cut(s)	361, 456, 1093, 1204
Bme1390I	CCNGG	3 cut(s)	427, 507, 943
Bme18I	GGWCC	2 cut(s)	173, 762
BmgT120I	GGNCC	3 cut(s)	173, 423, 762
BmrFI	CCNGG	3 cut(s)	427, 507, 943
BmsI	GCATC	3 cut(s)	15, 1085, 1488
BmtI	GCTAGC	1 cut(s)	950
BplI	GAGNNNNNCTC	2 cut(s)	28, 60
BpmI	CTGGAG	1 cut(s)	936
Bpu14I	TTCGAA	1 cut(s)	1342
BpuMI	CCSGG	1 cut(s)	943
BsaAI	YACGTR	1 cut(s)	1439
BsaI	GGTCTC	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	426
Bsc4I	CCNNNNNNNGG	1 cut(s)	1125
Bse118I	RCCGGY	1 cut(s)	244
Bse1I	ACTGG	2 cut(s)	919, 1294
Bse21I	CCTNAGG	1 cut(s)	1010
Bse3DI	GCAATG	1 cut(s)	100
BseBI	CCWGG	2 cut(s)	427, 507
BseDI	CCNNGG	1 cut(s)	426
BseGI	GGATG	5 cut(s)	443, 520, 824, 828, 1431
BseLI	CCNNNNNNNGG	1 cut(s)	1125
BseMI	GCAATG	1 cut(s)	100
BseMII	CTCAG	4 cut(s)	93, 626, 1094, 1155
BseNI	ACTGG	2 cut(s)	919, 1294
BseRI	GAGGAG	1 cut(s)	607
BseXI	GCAGC	3 cut(s)	441, 1103, 1214
BseYI	CCCAGC	1 cut(s)	480
BshFI	GGCC	4 cut(s)	43, 244, 381, 425
BsiHKAI	GWGCWC	1 cut(s)	80
BsiSI	CCGG	2 cut(s)	245, 942
BslI	CCNNNNNNNGG	1 cut(s)	1125
BsmAI	GTCTC	1 cut(s)	252
BsmI	GAATGC	1 cut(s)	190
BsnI	GGCC	4 cut(s)	43, 244, 381, 425
Bso31I	GGTCTC	1 cut(s)	252
Bsp119I	TTCGAA	1 cut(s)	1342
Bsp1286I	GDGCHC	1 cut(s)	80
Bsp143I	GATC	4 cut(s)	334, 1242, 1332, 1537
BspACI	CCGC	4 cut(s)	5, 180, 360, 883
BspANI	GGCC	4 cut(s)	43, 244, 381, 425
BspCNI	CTCAG	4 cut(s)	92, 627, 1093, 1156
BspHI	TCATGA	2 cut(s)	642, 1245
BspOI	GCTAGC	1 cut(s)	950
BspT104I	TTCGAA	1 cut(s)	1342
BspTNI	GGTCTC	1 cut(s)	252
BsrDI	GCAATG	1 cut(s)	100
BsrFI	RCCGGY	1 cut(s)	244
BsrI	ACTGG	2 cut(s)	919, 1294
BssAI	RCCGGY	1 cut(s)	244
BssECI	CCNNGG	1 cut(s)	426
BssMI	GATC	4 cut(s)	334, 1242, 1332, 1537
Bst2UI	CCWGG	2 cut(s)	427, 507
Bst4CI	ACNGT	5 cut(s)	90, 322, 719, 766, 1369
Bst6I	CTCTTC	1 cut(s)	413
BstBAI	YACGTR	1 cut(s)	1439
BstBI	TTCGAA	1 cut(s)	1342
BstC8I	GCNNGC	4 cut(s)	246, 540, 575, 948
BstDEI	CTNAG	5 cut(s)	79, 635, 1010, 1080, 1164
BstF5I	GGATG	5 cut(s)	443, 520, 824, 828, 1431
BstH2I	RGCGCY	1 cut(s)	1521
BstHHI	GCGC	2 cut(s)	1076, 1520
BstKTI	GATC	4 cut(s)	337, 1245, 1335, 1540
BstMAI	GTCTC	1 cut(s)	252
BstMBI	GATC	4 cut(s)	334, 1242, 1332, 1537
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 451, 539, 947, 1073, 1402, 1498
BstNI	CCWGG	2 cut(s)	427, 507
BstNSI	RCATGY	1 cut(s)	577
BstSCI	CCNGG	3 cut(s)	425, 505, 941
BstV1I	GCAGC	3 cut(s)	441, 1103, 1214
Bsu36I	CCTNAGG	1 cut(s)	1010
BsuRI	GGCC	4 cut(s)	43, 244, 381, 425
BtsCI	GGATG	5 cut(s)	443, 520, 824, 828, 1431
BtsIMutI	CAGTG	3 cut(s)	318, 705, 1270
Cac8I	GCNNGC	4 cut(s)	246, 540, 575, 948
CciI	TCATGA	2 cut(s)	642, 1245
CfoI	GCGC	2 cut(s)	1076, 1520
Cfr10I	RCCGGY	1 cut(s)	244
Cfr13I	GGNCC	3 cut(s)	173, 423, 762
Csp6I	GTAC	1 cut(s)	1436
CspCI	CAANNNNNGTGG	4 cut(s)	643, 678, 1246, 1281
CviAII	CATG	6 cut(s)	136, 189, 574, 593, 643, 1246
CviQI	GTAC	1 cut(s)	1436
DdeI	CTNAG	5 cut(s)	79, 635, 1010, 1080, 1164
DpnI	GATC	4 cut(s)	336, 1244, 1334, 1539
DpnII	GATC	4 cut(s)	334, 1242, 1332, 1537
DraI	TTTAAA	1 cut(s)	18
EaeI	YGGCCR	2 cut(s)	242, 379
Eam1104I	CTCTTC	1 cut(s)	413
EarI	CTCTTC	1 cut(s)	413
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	78
Eco147I	AGGCCT	1 cut(s)	43
Eco24I	GRGCYC	1 cut(s)	80
Eco31I	GGTCTC	1 cut(s)	252
Eco32I	GATATC	3 cut(s)	582, 862, 1465
Eco47I	GGWCC	2 cut(s)	173, 762
Eco53kI	GAGCTC	1 cut(s)	78
Eco81I	CCTNAGG	1 cut(s)	1010
EcoICRI	GAGCTC	1 cut(s)	78
EcoRII	CCWGG	2 cut(s)	425, 505
EcoRV	GATATC	3 cut(s)	582, 862, 1465
EcoT22I	ATGCAT	1 cut(s)	190
EcoT38I	GRGCYC	1 cut(s)	80
FaeI	CATG	6 cut(s)	139, 192, 577, 596, 646, 1249
FatI	CATG	6 cut(s)	135, 188, 573, 592, 642, 1245
FauI	CCCGC	2 cut(s)	173, 876
FauNDI	CATATG	1 cut(s)	496
FbaI	TGATCA	2 cut(s)	334, 1537
Fnu4HI	GCNGC	4 cut(s)	360, 455, 1092, 1203
FokI	GGATG	5 cut(s)	450, 527, 831, 835, 1438
FriOI	GRGCYC	1 cut(s)	80
Fsp4HI	GCNGC	4 cut(s)	360, 455, 1092, 1203
FspBI	CTAG	9 cut(s)	177, 269, 390, 854, 927, 947, 1095, 1151, 1579
GlaI	GCGC	2 cut(s)	1075, 1519
GluI	GCNGC	4 cut(s)	360, 455, 1092, 1203
GsaI	CCCAGC	1 cut(s)	484
GsuI	CTGGAG	1 cut(s)	936
HaeII	RGCGCY	1 cut(s)	1521
HaeIII	GGCC	4 cut(s)	43, 244, 381, 425
HapII	CCGG	2 cut(s)	245, 942
HhaI	GCGC	2 cut(s)	1076, 1520
Hin1II	CATG	6 cut(s)	139, 192, 577, 596, 646, 1249
Hin6I	GCGC	2 cut(s)	1074, 1518
HinP1I	GCGC	2 cut(s)	1074, 1518
HincII	GTYRAC	1 cut(s)	1182
HindII	GTYRAC	1 cut(s)	1182
HinfI	GANTC	4 cut(s)	130, 467, 639, 1385
HpaI	GTTAAC	1 cut(s)	1182
HpaII	CCGG	2 cut(s)	245, 942
HphI	GGTGA	3 cut(s)	34, 230, 290
Hpy166II	GTNNAC	4 cut(s)	199, 1182, 1372, 1453
Hpy188I	TCNGA	4 cut(s)	82, 296, 636, 1030
Hpy188III	TCNNGA	6 cut(s)	153, 286, 547, 643, 1246, 1382
Hpy8I	GTNNAC	4 cut(s)	199, 1182, 1372, 1453
HpyAV	CCTTC	6 cut(s)	33, 67, 134, 428, 746, 970
HpyCH4III	ACNGT	5 cut(s)	90, 322, 719, 766, 1369
HpyCH4IV	ACGT	1 cut(s)	1438
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 451, 539, 947, 1073, 1402, 1498
HpyF3I	CTNAG	5 cut(s)	79, 635, 1010, 1080, 1164
HpySE526I	ACGT	1 cut(s)	1438
Hsp92II	CATG	6 cut(s)	139, 192, 577, 596, 646, 1249
HspAI	GCGC	2 cut(s)	1074, 1518
KroI	GCCGGC	1 cut(s)	244
KroNI	GCCGGC	1 cut(s)	246
Ksp22I	TGATCA	2 cut(s)	334, 1537
KspAI	GTTAAC	1 cut(s)	1182
Kzo9I	GATC	4 cut(s)	334, 1242, 1332, 1537
LmnI	GCTCC	2 cut(s)	11, 620
Lsp1109I	GCAGC	3 cut(s)	441, 1103, 1214
LweI	GCATC	3 cut(s)	15, 1085, 1488
MaeI	CTAG	9 cut(s)	177, 269, 390, 854, 927, 947, 1095, 1151, 1579
MaeII	ACGT	1 cut(s)	1438
MaeIII	GTNAC	1 cut(s)	278
MalI	GATC	4 cut(s)	336, 1244, 1334, 1539
MboI	GATC	4 cut(s)	334, 1242, 1332, 1537
MboII	GAAGA	9 cut(s)	220, 430, 468, 476, 576, 1027, 1205, 1252, 1261
MhlI	GDGCHC	1 cut(s)	80
MlsI	TGGCCA	1 cut(s)	381
MluCI	AATT	7 cut(s)	327, 553, 692, 769, 893, 1231, 1345
MluNI	TGGCCA	1 cut(s)	381
MlyI	GAGTC	1 cut(s)	1379
MmeI	TCCRAC	2 cut(s)	740, 1343
MnlI	CCTC	7 cut(s)	54, 114, 414, 424, 628, 809, 1170
Mox20I	TGGCCA	1 cut(s)	381
Mph1103I	ATGCAT	1 cut(s)	190
MroNI	GCCGGC	1 cut(s)	244
MroXI	GAANNNNTTC	2 cut(s)	650, 1253
MscI	TGGCCA	1 cut(s)	381
MseI	TTAA	3 cut(s)	17, 1169, 1181
MslI	CAYNNNNRTG	2 cut(s)	788, 1545
Msp20I	TGGCCA	1 cut(s)	381
MspI	CCGG	2 cut(s)	245, 942
MspR9I	CCNGG	3 cut(s)	427, 507, 943
Mva1269I	GAATGC	1 cut(s)	190
MvaI	CCWGG	2 cut(s)	427, 507
MwoI	GCNNNNNNNGC	7 cut(s)	11, 451, 539, 947, 1073, 1402, 1498
NaeI	GCCGGC	1 cut(s)	246
NciI	CCSGG	1 cut(s)	943
NdeI	CATATG	1 cut(s)	496
NdeII	GATC	4 cut(s)	334, 1242, 1332, 1537
NgoMIV	GCCGGC	1 cut(s)	244
NheI	GCTAGC	1 cut(s)	946
NlaIII	CATG	6 cut(s)	139, 192, 577, 596, 646, 1249
NmuCI	GTSAC	1 cut(s)	278
NsiI	ATGCAT	1 cut(s)	190
NspI	RCATGY	1 cut(s)	577
NspV	TTCGAA	1 cut(s)	1342
OliI	CACNNNNGTG	1 cut(s)	788
PaeI	GCATGC	1 cut(s)	577
PagI	TCATGA	2 cut(s)	642, 1245
PceI	AGGCCT	1 cut(s)	43
PctI	GAATGC	1 cut(s)	190
PdiI	GCCGGC	1 cut(s)	246
PdmI	GAANNNNTTC	2 cut(s)	650, 1253
PfeI	GAWTC	3 cut(s)	130, 467, 639
PkrI	GCNGC	4 cut(s)	361, 456, 1093, 1204
PleI	GAGTC	1 cut(s)	1379
PpsI	GAGTC	1 cut(s)	1379
Ppu21I	YACGTR	1 cut(s)	1439
PsiI	TTATAA	1 cut(s)	840
Psp124BI	GAGCTC	1 cut(s)	80
Psp6I	CCWGG	2 cut(s)	425, 505
PspFI	CCCAGC	1 cut(s)	480
PspGI	CCWGG	2 cut(s)	425, 505
PspPI	GGNCC	3 cut(s)	173, 423, 762
RsaI	GTAC	1 cut(s)	1437
RsaNI	GTAC	1 cut(s)	1436
RseI	CAYNNNNRTG	2 cut(s)	788, 1545
SacI	GAGCTC	1 cut(s)	80
SaqAI	TTAA	3 cut(s)	17, 1169, 1181
SatI	GCNGC	4 cut(s)	360, 455, 1092, 1203
Sau3AI	GATC	4 cut(s)	334, 1242, 1332, 1537
Sau96I	GGNCC	3 cut(s)	173, 423, 762
SchI	GAGTC	1 cut(s)	1379
ScrFI	CCNGG	3 cut(s)	427, 507, 943
SduI	GDGCHC	1 cut(s)	80
SfaNI	GCATC	3 cut(s)	15, 1085, 1488
SfuI	TTCGAA	1 cut(s)	1342
SinI	GGWCC	2 cut(s)	173, 762
SmiMI	CAYNNNNRTG	2 cut(s)	788, 1545
SphI	GCATGC	1 cut(s)	577
Sse9I	AATT	7 cut(s)	327, 553, 692, 769, 893, 1231, 1345
SseBI	AGGCCT	1 cut(s)	43
SsiI	CCGC	4 cut(s)	5, 180, 360, 883
SspI	AATATT	1 cut(s)	682
SspMI	CTAG	9 cut(s)	177, 269, 390, 854, 927, 947, 1095, 1151, 1579
SstI	GAGCTC	1 cut(s)	80
StuI	AGGCCT	1 cut(s)	43
StyD4I	CCNGG	3 cut(s)	425, 505, 941
TaaI	ACNGT	5 cut(s)	90, 322, 719, 766, 1369
TaiI	ACGT	1 cut(s)	1441
TaqI	TCGA	3 cut(s)	470, 1342, 1388
TaqII	GACCGA	1 cut(s)	1197
TasI	AATT	7 cut(s)	327, 553, 692, 769, 893, 1231, 1345
TauI	GCSGC	1 cut(s)	362
TfiI	GAWTC	3 cut(s)	130, 467, 639
Tru1I	TTAA	3 cut(s)	17, 1169, 1181
Tru9I	TTAA	3 cut(s)	17, 1169, 1181
TscAI	CASTG	3 cut(s)	325, 705, 1270
TseFI	GTSAC	1 cut(s)	278
TseI	GCWGC	3 cut(s)	454, 1091, 1202
Tsp45I	GTSAC	1 cut(s)	278
TspDTI	ATGAA	9 cut(s)	356, 513, 609, 657, 659, 1161, 1206, 1260, 1262
TspGWI	ACGGA	3 cut(s)	430, 824, 1059
TspRI	CASTG	3 cut(s)	325, 705, 1270
VpaK11BI	GGWCC	2 cut(s)	173, 762
XapI	RAATTY	5 cut(s)	327, 692, 893, 1231, 1345
XceI	RCATGY	1 cut(s)	577
XcmI	CCANNNNNNNNNTGG	1 cut(s)	911
XmnI	GAANNNNTTC	2 cut(s)	650, 1253
XspI	CTAG	9 cut(s)	177, 269, 390, 854, 927, 947, 1095, 1151, 1579
Zsp2I	ATGCAT	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.