RLG00000011371

B3 domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
8956507 .. 8959757
3251 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011371

Sequence Viewer

Length: 1554 bp
ATGGCGGAAGGAGCTTTAAAGGTGATGCCTAATGCGAGAAGGCCTCACTTCTTTGCCTTCTTTTCTGCTGATTTGAGCTCAGAGCGACTGAAAATACCAGAGAGGTTTATGATTCACATGGAAGGGAGAACATCTGGAATAGTTGTATTGTCTGGTCCTAGCGGGAATGCATGGAATGTTCACTTGATTGAACAAAATGGTGATTTGTTCTTCCATTATGGGTGGCCGGCATTTGTAAGAGACCATTCCCTAGAATGTGGTGACTTCTTGATTTTCAGATATGATGGTGAGTTGCGTTTCACTGTGCAAATTTTTGATCAAACTGCGTGTGAGAAAGAAGCCGCATTTCATTCCCAATGTGGCCAAAGTTCTAGCTACTTTGAAAAACTTATTGGACGGAAGAGGGCCAGGGAGGAAGGATGTGGGCTTGACAGGCTGCTATTCGAAGAATCGACTTCTTCCCAGCAATCAAAGACATATGAAAATCCTGGTTTGGATGTTGTCATATACAAAGCAAAGCAAGCCATCCAGAATAATTTGAATGATAGAGTTTGTATGCAGATATCTTCGGCACATGAAGTAGCTCAATCATTTAGCTCCTCGAATCCTTATTTTCTGAGAATCATGAAAAGTTTCAACATCAGTGGTTCATATACTTTGAATATTCCATATAAATTTTCAGTGGCACATCTACCAAACTGTAAAGTAAAGATTGTCCTTCTAAACTTGAAAGGAGAAAGTTGGACAGTCAATTCTGTGCCGACCACAAGAGTGCATACAAGTCATACTCTTTGTGGAGGATGGATGGCTTTTGTCCGTTATAATGACATAAAGCTTGGAGATATCTGCATTTTTGAACTTGTGCGGGAGTGTGAATTTTGCGTCCATATTCAAACTGGAGAAACATCTAGTAGGTTATGTGCCGGGCTAGCTTTGAAAGGTTTGTCAAAGAAAGTGAAGGGGAACTCTCCTAAAGTCCATACAAAGAGCCTAAGGAAGATAGAGATGTCTGAAACAAGGAAACACGGAAGCACATCAAAATCTATTGCCAAAGGCGCATCTCAGTCAAAAGCAGCCAGTAAAAAGTTGGCTACTCGCAGGAAAAAAAGTGTTGATGATGAACTAGGGTCAAAAGCTGAGTTAAGAATGAGATTAACACTTGATGAAGAAAAAGCAGCTCGATCTTTCACTTCTTGCTTCCCAAATTTTGTGAAGATCATGAAGAAGTTCAATATCAGTGGTTCATATACATTGAAAATCCCATACCAGTTTTCCACAGAACATCTACCCAACTATAAAACAGAGATCGTGCTTCGAAATTCAAACGGGGAATGTTGGACCGTGAACTCTGTTCCAGACTCGAAAGGGCGAGTGGTGCATACTTTCTGTGGTGGGTGGATGGCATTTGTACGTGGAAATGATGTCAACATTGGAGATATCTGCATTTTTGAACTTGTTGGTAAGCGAGAAATGCGAGTGCACATTTCTGCCGCTGATAAAAATGGGTTTGATCATCAAGGTGGAGAAGCAACGACTAATGCAGAGTATAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

518

Amino Acids

58.06

Weight (kDa)

9.14

Isoelectric Point (pI)

39.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 18 - 107 6.1e-17 B3 DNA binding domain
B3 PF02362 213 - 297 4.6e-13 B3 DNA binding domain
B3 PF02362 403 - 496 7e-14 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 822
AciI CCGC 5 cut(s) 5, 162, 342, 865, 1491
AcoI YGGCCR 2 cut(s) 224, 361
AcsI RAATTY 5 cut(s) 309, 674, 875, 1204, 1318
AfaI GTAC 1 cut(s) 1410
AjnI CCWGG 2 cut(s) 407, 487
AjuI GAANNNNNNNTTGG 2 cut(s) 375, 407
AleI CACNNNNGTG 1 cut(s) 770
Alw21I GWGCWC 2 cut(s) 80, 1482
Alw26I GTCTC 1 cut(s) 234
Alw44I GTGCAC 1 cut(s) 1478
AoxI GGCC 4 cut(s) 41, 224, 361, 405
ApaLI GTGCAC 1 cut(s) 1478
ApeKI GCWGC 3 cut(s) 436, 1073, 1175
ApoI RAATTY 5 cut(s) 309, 674, 875, 1204, 1318
Asp700I GAANNNNTTC 2 cut(s) 632, 1226
AspLEI GCGC 1 cut(s) 1058
AspS9I GGNCC 3 cut(s) 155, 405, 1338
AsuC2I CCSGG 1 cut(s) 925
AsuHPI GGTGA 4 cut(s) 34, 212, 272, 299
AsuII TTCGAA 2 cut(s) 444, 1315
AsuNHI GCTAGC 1 cut(s) 928
AvaII GGWCC 2 cut(s) 155, 1338
AxyI CCTNAGG 1 cut(s) 992
BaeGI GKGCMC 1 cut(s) 1482
BalI TGGCCA 1 cut(s) 363
BanII GRGCYC 1 cut(s) 80
Bbv12I GWGCWC 2 cut(s) 80, 1482
BbvI GCAGC 3 cut(s) 423, 1085, 1187
BccI CCATC 5 cut(s) 278, 533, 795, 799, 1393
BciT130I CCWGG 2 cut(s) 409, 489
BclI TGATCA 2 cut(s) 316, 1510
BcnI CCSGG 1 cut(s) 925
BcoDI GTCTC 1 cut(s) 234
BfaI CTAG 7 cut(s) 159, 251, 372, 909, 929, 1124, 1552
BisI GCNGC 5 cut(s) 342, 437, 1074, 1176, 1491
BlsI GCNGC 5 cut(s) 343, 438, 1075, 1177, 1492
Bme1390I CCNGG 3 cut(s) 409, 489, 925
Bme18I GGWCC 2 cut(s) 155, 1338
BmgT120I GGNCC 3 cut(s) 155, 405, 1338
BmrFI CCNGG 3 cut(s) 409, 489, 925
BmsI GCATC 2 cut(s) 15, 1067
BmtI GCTAGC 1 cut(s) 932
BplI GAGNNNNNCTC 2 cut(s) 28, 60
BpmI CTGGAG 1 cut(s) 918
Bpu14I TTCGAA 2 cut(s) 444, 1315
BpuMI CCSGG 1 cut(s) 925
BsaAI YACGTR 1 cut(s) 1412
BsaI GGTCTC 1 cut(s) 234
BsaJI CCNNGG 1 cut(s) 408
Bse118I RCCGGY 1 cut(s) 226
Bse1I ACTGG 3 cut(s) 901, 1077, 1267
Bse21I CCTNAGG 1 cut(s) 992
BseBI CCWGG 2 cut(s) 409, 489
BseDI CCNNGG 1 cut(s) 408
BseGI GGATG 6 cut(s) 425, 502, 525, 806, 810, 1404
BseMII CTCAG 4 cut(s) 93, 608, 1076, 1128
BseNI ACTGG 3 cut(s) 901, 1077, 1267
BseRI GAGGAG 1 cut(s) 589
BseSI GKGCMC 1 cut(s) 1482
BseXI GCAGC 3 cut(s) 423, 1085, 1187
BseYI CCCAGC 1 cut(s) 462
BshFI GGCC 4 cut(s) 43, 226, 363, 407
BsiHKAI GWGCWC 2 cut(s) 80, 1482
BsiSI CCGG 2 cut(s) 227, 924
BsmAI GTCTC 1 cut(s) 234
BsmI GAATGC 1 cut(s) 172
BsnI GGCC 4 cut(s) 43, 226, 363, 407
Bso31I GGTCTC 1 cut(s) 234
Bsp119I TTCGAA 2 cut(s) 444, 1315
Bsp1286I GDGCHC 2 cut(s) 80, 1482
Bsp143I GATC 5 cut(s) 316, 1181, 1215, 1305, 1510
BspACI CCGC 5 cut(s) 5, 162, 342, 865, 1491
BspANI GGCC 4 cut(s) 43, 226, 363, 407
BspCNI CTCAG 4 cut(s) 92, 609, 1075, 1129
BspHI TCATGA 2 cut(s) 624, 1218
BspOI GCTAGC 1 cut(s) 932
BspT104I TTCGAA 2 cut(s) 444, 1315
BspTNI GGTCTC 1 cut(s) 234
BsrFI RCCGGY 1 cut(s) 226
BsrI ACTGG 3 cut(s) 901, 1077, 1267
BssAI RCCGGY 1 cut(s) 226
BssECI CCNNGG 1 cut(s) 408
BssMI GATC 5 cut(s) 316, 1181, 1215, 1305, 1510
Bst2UI CCWGG 2 cut(s) 409, 489
Bst4CI ACNGT 4 cut(s) 304, 701, 748, 1342
Bst6I CTCTTC 1 cut(s) 395
BstBAI YACGTR 1 cut(s) 1412
BstBI TTCGAA 2 cut(s) 444, 1315
BstC8I GCNNGC 3 cut(s) 228, 522, 930
BstDEI CTNAG 5 cut(s) 79, 617, 992, 1062, 1137
BstF5I GGATG 6 cut(s) 425, 502, 525, 806, 810, 1404
BstHHI GCGC 1 cut(s) 1058
BstKTI GATC 5 cut(s) 319, 1184, 1218, 1308, 1513
BstMAI GTCTC 1 cut(s) 234
BstMBI GATC 5 cut(s) 316, 1181, 1215, 1305, 1510
BstMWI GCNNNNNNNGC 7 cut(s) 11, 433, 521, 929, 1055, 1375, 1471
BstNI CCWGG 2 cut(s) 409, 489
BstSCI CCNGG 3 cut(s) 407, 487, 923
BstSLI GKGCMC 1 cut(s) 1482
BstV1I GCAGC 3 cut(s) 423, 1085, 1187
Bsu36I CCTNAGG 1 cut(s) 992
BsuRI GGCC 4 cut(s) 43, 226, 363, 407
BtsCI GGATG 6 cut(s) 425, 502, 525, 806, 810, 1404
BtsIMutI CAGTG 4 cut(s) 300, 649, 687, 1243
Cac8I GCNNGC 3 cut(s) 228, 522, 930
CciI TCATGA 2 cut(s) 624, 1218
CfoI GCGC 1 cut(s) 1058
Cfr10I RCCGGY 1 cut(s) 226
Cfr13I GGNCC 3 cut(s) 155, 405, 1338
CseI GACGC 1 cut(s) 871
Csp6I GTAC 1 cut(s) 1409
CspCI CAANNNNNGTGG 4 cut(s) 625, 660, 1219, 1254
CviAII CATG 5 cut(s) 118, 171, 575, 625, 1219
CviQI GTAC 1 cut(s) 1409
DdeI CTNAG 5 cut(s) 79, 617, 992, 1062, 1137
DpnI GATC 5 cut(s) 318, 1183, 1217, 1307, 1512
DpnII GATC 5 cut(s) 316, 1181, 1215, 1305, 1510
DraI TTTAAA 1 cut(s) 18
EaeI YGGCCR 2 cut(s) 224, 361
Eam1104I CTCTTC 1 cut(s) 395
EarI CTCTTC 1 cut(s) 395
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 78
Eco147I AGGCCT 1 cut(s) 43
Eco24I GRGCYC 1 cut(s) 80
Eco31I GGTCTC 1 cut(s) 234
Eco32I GATATC 3 cut(s) 564, 844, 1438
Eco47I GGWCC 2 cut(s) 155, 1338
Eco53kI GAGCTC 1 cut(s) 78
Eco81I CCTNAGG 1 cut(s) 992
EcoICRI GAGCTC 1 cut(s) 78
EcoRII CCWGG 2 cut(s) 407, 487
EcoRV GATATC 3 cut(s) 564, 844, 1438
EcoT22I ATGCAT 1 cut(s) 172
EcoT38I GRGCYC 1 cut(s) 80
FaeI CATG 5 cut(s) 121, 174, 578, 628, 1222
FatI CATG 5 cut(s) 117, 170, 574, 624, 1218
FauI CCCGC 2 cut(s) 155, 858
FauNDI CATATG 1 cut(s) 478
FbaI TGATCA 2 cut(s) 316, 1510
Fnu4HI GCNGC 5 cut(s) 342, 437, 1074, 1176, 1491
FokI GGATG 6 cut(s) 432, 509, 512, 813, 817, 1411
FriOI GRGCYC 1 cut(s) 80
Fsp4HI GCNGC 5 cut(s) 342, 437, 1074, 1176, 1491
FspBI CTAG 7 cut(s) 159, 251, 372, 909, 929, 1124, 1552
GlaI GCGC 1 cut(s) 1057
GluI GCNGC 5 cut(s) 342, 437, 1074, 1176, 1491
GsaI CCCAGC 1 cut(s) 466
GsuI CTGGAG 1 cut(s) 918
HaeIII GGCC 4 cut(s) 43, 226, 363, 407
HapII CCGG 2 cut(s) 227, 924
HgaI GACGC 1 cut(s) 871
HhaI GCGC 1 cut(s) 1058
Hin1II CATG 5 cut(s) 121, 174, 578, 628, 1222
Hin6I GCGC 1 cut(s) 1056
HinP1I GCGC 1 cut(s) 1056
HincII GTYRAC 1 cut(s) 1426
HindII GTYRAC 1 cut(s) 1426
HindIII AAGCTT 1 cut(s) 833
HinfI GANTC 5 cut(s) 112, 449, 604, 621, 1358
HpaII CCGG 2 cut(s) 227, 924
HphI GGTGA 4 cut(s) 34, 212, 272, 299
Hpy166II GTNNAC 4 cut(s) 181, 1345, 1426, 1480
Hpy188I TCNGA 4 cut(s) 82, 278, 618, 1012
Hpy188III TCNNGA 6 cut(s) 135, 268, 529, 625, 1219, 1355
Hpy8I GTNNAC 4 cut(s) 181, 1345, 1426, 1480
HpyAV CCTTC 6 cut(s) 33, 67, 116, 410, 728, 952
HpyCH4III ACNGT 4 cut(s) 304, 701, 748, 1342
HpyCH4IV ACGT 1 cut(s) 1411
HpyCH4V TGCA 9 cut(s) 170, 307, 559, 775, 849, 1378, 1443, 1480, 1541
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 433, 521, 929, 1055, 1375, 1471
HpyF3I CTNAG 5 cut(s) 79, 617, 992, 1062, 1137
HpySE526I ACGT 1 cut(s) 1411
Hsp92II CATG 5 cut(s) 121, 174, 578, 628, 1222
HspAI GCGC 1 cut(s) 1056
KroI GCCGGC 1 cut(s) 226
KroNI GCCGGC 1 cut(s) 228
Ksp22I TGATCA 2 cut(s) 316, 1510
Kzo9I GATC 5 cut(s) 316, 1181, 1215, 1305, 1510
LmnI GCTCC 2 cut(s) 11, 602
Lsp1109I GCAGC 3 cut(s) 423, 1085, 1187
LweI GCATC 2 cut(s) 15, 1067
MaeI CTAG 7 cut(s) 159, 251, 372, 909, 929, 1124, 1552
MaeII ACGT 1 cut(s) 1411
MaeIII GTNAC 1 cut(s) 260
MalI GATC 5 cut(s) 318, 1183, 1217, 1307, 1512
MboI GATC 5 cut(s) 316, 1181, 1215, 1305, 1510
MboII GAAGA 9 cut(s) 202, 412, 450, 458, 558, 1009, 1178, 1225, 1234
MhlI GDGCHC 2 cut(s) 80, 1482
MlsI TGGCCA 1 cut(s) 363
MluCI AATT 7 cut(s) 309, 535, 674, 751, 875, 1204, 1318
MluNI TGGCCA 1 cut(s) 363
MlyI GAGTC 1 cut(s) 1352
MmeI TCCRAC 2 cut(s) 722, 1316
MnlI CCTC 6 cut(s) 54, 96, 396, 406, 610, 791
Mox20I TGGCCA 1 cut(s) 363
Mph1103I ATGCAT 1 cut(s) 172
MroNI GCCGGC 1 cut(s) 226
MroXI GAANNNNTTC 2 cut(s) 632, 1226
MscI TGGCCA 1 cut(s) 363
MseI TTAA 3 cut(s) 17, 1142, 1154
MslI CAYNNNNRTG 2 cut(s) 770, 1518
Msp20I TGGCCA 1 cut(s) 363
MspA1I CMGCKG 1 cut(s) 1493
MspI CCGG 2 cut(s) 227, 924
MspR9I CCNGG 3 cut(s) 409, 489, 925
Mva1269I GAATGC 1 cut(s) 172
MvaI CCWGG 2 cut(s) 409, 489
MwoI GCNNNNNNNGC 7 cut(s) 11, 433, 521, 929, 1055, 1375, 1471
NaeI GCCGGC 1 cut(s) 228
NciI CCSGG 1 cut(s) 925
NdeI CATATG 1 cut(s) 478
NdeII GATC 5 cut(s) 316, 1181, 1215, 1305, 1510
NgoMIV GCCGGC 1 cut(s) 226
NheI GCTAGC 1 cut(s) 928
NlaIII CATG 5 cut(s) 121, 174, 578, 628, 1222
NmuCI GTSAC 1 cut(s) 260
NsiI ATGCAT 1 cut(s) 172
NspV TTCGAA 2 cut(s) 444, 1315
OliI CACNNNNGTG 1 cut(s) 770
PagI TCATGA 2 cut(s) 624, 1218
PceI AGGCCT 1 cut(s) 43
PctI GAATGC 1 cut(s) 172
PdiI GCCGGC 1 cut(s) 228
PdmI GAANNNNTTC 2 cut(s) 632, 1226
PfeI GAWTC 4 cut(s) 112, 449, 604, 621
PkrI GCNGC 5 cut(s) 343, 438, 1075, 1177, 1492
PleI GAGTC 1 cut(s) 1352
PpsI GAGTC 1 cut(s) 1352
Ppu21I YACGTR 1 cut(s) 1412
PsiI TTATAA 1 cut(s) 822
Psp124BI GAGCTC 1 cut(s) 80
Psp6I CCWGG 2 cut(s) 407, 487
PspFI CCCAGC 1 cut(s) 462
PspGI CCWGG 2 cut(s) 407, 487
PspPI GGNCC 3 cut(s) 155, 405, 1338
RsaI GTAC 1 cut(s) 1410
RsaNI GTAC 1 cut(s) 1409
RseI CAYNNNNRTG 2 cut(s) 770, 1518
SacI GAGCTC 1 cut(s) 80
SaqAI TTAA 3 cut(s) 17, 1142, 1154
SatI GCNGC 5 cut(s) 342, 437, 1074, 1176, 1491
Sau3AI GATC 5 cut(s) 316, 1181, 1215, 1305, 1510
Sau96I GGNCC 3 cut(s) 155, 405, 1338
SchI GAGTC 1 cut(s) 1352
ScrFI CCNGG 3 cut(s) 409, 489, 925
SduI GDGCHC 2 cut(s) 80, 1482
SfaNI GCATC 2 cut(s) 15, 1067
SfuI TTCGAA 2 cut(s) 444, 1315
SinI GGWCC 2 cut(s) 155, 1338
SmiMI CAYNNNNRTG 2 cut(s) 770, 1518
Sse9I AATT 7 cut(s) 309, 535, 674, 751, 875, 1204, 1318
SseBI AGGCCT 1 cut(s) 43
SsiI CCGC 5 cut(s) 5, 162, 342, 865, 1491
SspI AATATT 1 cut(s) 664
SspMI CTAG 7 cut(s) 159, 251, 372, 909, 929, 1124, 1552
SstI GAGCTC 1 cut(s) 80
StuI AGGCCT 1 cut(s) 43
StyD4I CCNGG 3 cut(s) 407, 487, 923
TaaI ACNGT 4 cut(s) 304, 701, 748, 1342
TaiI ACGT 1 cut(s) 1414
TaqI TCGA 6 cut(s) 444, 452, 602, 1180, 1315, 1361
TasI AATT 7 cut(s) 309, 535, 674, 751, 875, 1204, 1318
TauI GCSGC 2 cut(s) 344, 1493
TfiI GAWTC 4 cut(s) 112, 449, 604, 621
Tru1I TTAA 3 cut(s) 17, 1142, 1154
Tru9I TTAA 3 cut(s) 17, 1142, 1154
TscAI CASTG 4 cut(s) 307, 649, 687, 1243
TseFI GTSAC 1 cut(s) 260
TseI GCWGC 3 cut(s) 436, 1073, 1175
Tsp45I GTSAC 1 cut(s) 260
TspDTI ATGAA 9 cut(s) 338, 495, 591, 639, 641, 1134, 1179, 1233, 1235
TspGWI ACGGA 3 cut(s) 412, 806, 1041
TspRI CASTG 4 cut(s) 307, 649, 687, 1243
VneI GTGCAC 1 cut(s) 1478
VpaK11BI GGWCC 2 cut(s) 155, 1338
XapI RAATTY 5 cut(s) 309, 674, 875, 1204, 1318
XcmI CCANNNNNNNNNTGG 2 cut(s) 893, 1084
XmnI GAANNNNTTC 2 cut(s) 632, 1226
XspI CTAG 7 cut(s) 159, 251, 372, 909, 929, 1124, 1552
Zsp2I ATGCAT 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.