Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8370125.1

Orthogroup ID

OG0011529

Physical Location & Seq

Genomic Coordinates Reverse (-)

531 .. 1035

Gene Structure 505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8370125.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

atgaggctaacacttgatgaagaaaaagcagctcgatctttcacttcttgcttcccaaattttgtgaagatcatgaagaagttcaatatcagtggttcatatacattgaaaatcccataccagttttccacagaacatctacccaactataaaacagagatcgtgcttcgaaattcaaaaggggaatgttggactgtgaactctgttccagactcgaaggggcgagtggtgcatactttctgtggtgggtggatggcatttgtacgtggaaatgatgtcaacattggagatatctgcatttttgaacttgtaggtaagcgagagatgcgagtgcacatttctggcgctgataaaaatgggtttgatcatcaaggcggagaagcaacgactaatgcagagtatagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

135

Amino Acids

15.22

Weight (kDa)

8.36

Isoelectric Point (pI)

36.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011529)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40640
malus_domestica	MD08G1039600.v1.1 MD15G1034200.v1.1
prunus_persica	Prupe.1G388200_v2.0.a1 Prupe.1G388200_v2.0.a1
pyrus_communis	pycom05g03900 pycom08g03170 pycom13g02130 pycom15g03150
rosa_chinensis	RchiOBHm_Chr6g0300031
rosa_laevigata	RLG00000011371
rosa_multiflora	Rmu_co8370125.1_g000001 Rmu_sc0010665.1_g000002
rosa_roxburghii	Rroxscaffold_7G00168180
rosa_rugosa	Rorug06G0293700
rosa_samantha	Rh6AG405300 Rh6BG413600 Rh6CG420700 Rh6DG406300
rosa_wichuraiana	Rw6G035470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	375
AcsI	RAATTY	2 cut(s)	58, 172
AfaI	GTAC	1 cut(s)	264
AgsI	TTSAA	4 cut(s)	85, 109, 177, 305
AluBI	AGCT	2 cut(s)	32, 405
AluI	AGCT	2 cut(s)	32, 405
Alw21I	GWGCWC	1 cut(s)	336
Alw44I	GTGCAC	1 cut(s)	332
ApaLI	GTGCAC	1 cut(s)	332
ApeKI	GCWGC	1 cut(s)	29
ApoI	RAATTY	2 cut(s)	58, 172
Asp700I	GAANNNNTTC	1 cut(s)	80
AspLEI	GCGC	1 cut(s)	347
AsuII	TTCGAA	1 cut(s)	169
BaeGI	GKGCMC	1 cut(s)	336
Bbv12I	GWGCWC	1 cut(s)	336
BbvI	GCAGC	1 cut(s)	41
BccI	CCATC	1 cut(s)	247
BclI	TGATCA	1 cut(s)	364
BfaI	CTAG	1 cut(s)	406
BfoI	RGCGCY	1 cut(s)	348
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
BmsI	GCATC	1 cut(s)	315
Bpu14I	TTCGAA	1 cut(s)	169
BsaAI	YACGTR	1 cut(s)	266
Bse1I	ACTGG	1 cut(s)	121
BseGI	GGATG	1 cut(s)	258
BseNI	ACTGG	1 cut(s)	121
BseSI	GKGCMC	1 cut(s)	336
BseXI	GCAGC	1 cut(s)	41
BsiHKAI	GWGCWC	1 cut(s)	336
Bsp119I	TTCGAA	1 cut(s)	169
Bsp1286I	GDGCHC	1 cut(s)	336
Bsp143I	GATC	4 cut(s)	35, 69, 159, 364
BspACI	CCGC	1 cut(s)	375
BspHI	TCATGA	1 cut(s)	72
BspT104I	TTCGAA	1 cut(s)	169
BsrI	ACTGG	1 cut(s)	121
BssMI	GATC	4 cut(s)	35, 69, 159, 364
Bst4CI	ACNGT	1 cut(s)	196
BstBAI	YACGTR	1 cut(s)	266
BstBI	TTCGAA	1 cut(s)	169
BstF5I	GGATG	1 cut(s)	258
BstH2I	RGCGCY	1 cut(s)	348
BstHHI	GCGC	1 cut(s)	347
BstKTI	GATC	4 cut(s)	38, 72, 162, 367
BstMBI	GATC	4 cut(s)	35, 69, 159, 364
BstMWI	GCNNNNNNNGC	2 cut(s)	229, 325
BstSLI	GKGCMC	1 cut(s)	336
BstV1I	GCAGC	1 cut(s)	41
BtsCI	GGATG	1 cut(s)	258
BtsIMutI	CAGTG	1 cut(s)	97
CciI	TCATGA	1 cut(s)	72
CfoI	GCGC	1 cut(s)	347
Csp6I	GTAC	1 cut(s)	263
CspCI	CAANNNNNGTGG	2 cut(s)	73, 108
CviAII	CATG	1 cut(s)	73
CviJI	RGCY	3 cut(s)	7, 32, 405
CviKI_1	RGCY	3 cut(s)	7, 32, 405
CviQI	GTAC	1 cut(s)	263
DpnI	GATC	4 cut(s)	37, 71, 161, 366
DpnII	GATC	4 cut(s)	35, 69, 159, 364
EciI	GGCGGA	1 cut(s)	390
Eco32I	GATATC	1 cut(s)	292
EcoRV	GATATC	1 cut(s)	292
FaeI	CATG	1 cut(s)	76
FaiI	YATR	7 cut(s)	74, 100, 102, 118, 150, 234, 402
FatI	CATG	1 cut(s)	72
FbaI	TGATCA	1 cut(s)	364
Fnu4HI	GCNGC	1 cut(s)	30
FokI	GGATG	1 cut(s)	265
Fsp4HI	GCNGC	1 cut(s)	30
FspBI	CTAG	1 cut(s)	406
GlaI	GCGC	1 cut(s)	346
GluI	GCNGC	1 cut(s)	30
HaeII	RGCGCY	1 cut(s)	348
HhaI	GCGC	1 cut(s)	347
Hin1II	CATG	1 cut(s)	76
Hin6I	GCGC	1 cut(s)	345
HinP1I	GCGC	1 cut(s)	345
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HinfI	GANTC	1 cut(s)	212
Hpy166II	GTNNAC	3 cut(s)	199, 280, 334
Hpy188III	TCNNGA	2 cut(s)	73, 209
Hpy8I	GTNNAC	3 cut(s)	199, 280, 334
HpyAV	CCTTC	1 cut(s)	211
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4IV	ACGT	1 cut(s)	265
HpyCH4V	TGCA	4 cut(s)	232, 297, 334, 395
HpyF10VI	GCNNNNNNNGC	2 cut(s)	229, 325
HpySE526I	ACGT	1 cut(s)	265
Hsp92II	CATG	1 cut(s)	76
HspAI	GCGC	1 cut(s)	345
Ksp22I	TGATCA	1 cut(s)	364
Kzo9I	GATC	4 cut(s)	35, 69, 159, 364
LpnPI	CCDG	3 cut(s)	134, 222, 327
Lsp1109I	GCAGC	1 cut(s)	41
LweI	GCATC	1 cut(s)	315
MaeI	CTAG	1 cut(s)	406
MaeII	ACGT	1 cut(s)	265
MalI	GATC	4 cut(s)	37, 71, 161, 366
MboI	GATC	4 cut(s)	35, 69, 159, 364
MboII	GAAGA	3 cut(s)	32, 79, 88
MhlI	GDGCHC	1 cut(s)	336
MluCI	AATT	2 cut(s)	58, 172
MlyI	GAGTC	1 cut(s)	206
MmeI	TCCRAC	1 cut(s)	170
MroXI	GAANNNNTTC	1 cut(s)	80
MwoI	GCNNNNNNNGC	2 cut(s)	229, 325
NdeII	GATC	4 cut(s)	35, 69, 159, 364
NlaIII	CATG	1 cut(s)	76
NspV	TTCGAA	1 cut(s)	169
PagI	TCATGA	1 cut(s)	72
PdmI	GAANNNNTTC	1 cut(s)	80
PkrI	GCNGC	1 cut(s)	31
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
Ppu21I	YACGTR	1 cut(s)	266
RsaI	GTAC	1 cut(s)	264
RsaNI	GTAC	1 cut(s)	263
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	4 cut(s)	35, 69, 159, 364
SchI	GAGTC	1 cut(s)	206
SduI	GDGCHC	1 cut(s)	336
SetI	ASST	4 cut(s)	34, 268, 316, 407
SfaNI	GCATC	1 cut(s)	315
SfuI	TTCGAA	1 cut(s)	169
Sse9I	AATT	2 cut(s)	58, 172
SsiI	CCGC	1 cut(s)	375
SspMI	CTAG	1 cut(s)	406
TaaI	ACNGT	1 cut(s)	196
TaiI	ACGT	1 cut(s)	268
TaqI	TCGA	3 cut(s)	34, 169, 215
TasI	AATT	2 cut(s)	58, 172
TscAI	CASTG	1 cut(s)	97
TseI	GCWGC	1 cut(s)	29
TspDTI	ATGAA	3 cut(s)	33, 87, 89
TspRI	CASTG	1 cut(s)	97
VneI	GTGCAC	1 cut(s)	332
XapI	RAATTY	2 cut(s)	58, 172
XmnI	GAANNNNTTC	1 cut(s)	80
XspI	CTAG	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.