Rw6G035470

B3 domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
60013328 .. 60016549
3222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G035470.1

Sequence Viewer

Length: 1539 bp
ATGGCGGAAGGAGCTTTAAAGGTGATGCCTAATGCGAGAAGGCCTCACTTCTTTGCCTTCTTTTCTGCTGATTTGAGCTCAGAGCGACTGGTTTATGATTCACATGGAAGGGACAACATCTGGAATAGTGTGTTGTCTGGTCCTAGTGGGAATGCATGGAATGTTCACTTGATTGAACAAAATGGTGATTTGTTCTTCCATTATGGGTGGCCGGCATTTGTAAGAGACCATTCCCTAGAATGTGGTGACTTCTTGATTTTCAGATATGATGGTGAGTTGCGTTTCACTGTGCAAATTTTTGATCAAACTGCCTGTGAGAAAGAGGCCGCATTTCATTCCCAATGTGGCCAAAGTTCTAGCTACTTTGAAAAACTTATTGGACGGAAGAGGGCCAGGGAGGAAGGATGTGGGCTTGACAGGCTGCTATTTGAAGAATCGACTTCTTCCCAGCAATCAAAGACATATGAAAATCCTGGTTTGGATGTTGTCATATACAAAGCAAAGCAAGCCATCCAGAATAATTTGAATGATAGAGTTTGTATGCAGATATCTTCGGCACATGAAGTAGCTCAATCATTTAGCTCCTCTAATCCTTATTTTCTGAGAATCATGAAAAGTTTCAACATCAGTGGTTCATATACTTTGAATATTCCATATAAATTTTCAGTGGCACATCTACCAAACTGTAAAGTAAAGATTGTCCTTCTAAACTTGAAAGGAGAAAGTTGGACCGTCAATTCTGTGCCGACCACAAGAGTGCATACAAGTCATACTCTTTGTGGAGGATGGATGGCTTTTGTCCGTTATAATGACATAAAGCTAGGAGATATCTGCATTTTTGAACTTGTGCGGGAGTGTGAATTTCGCGTCCATATTCAAACTGGAGAAACATCTAGTAGGTTATGTGCCGGGCTAGCTTTGAAAGGTTTGTCAAAGAAAGTGAAGGGGAACTCTCCTAAAGTCCATACAAAGAGCCTAAGGAAGATAGAGATGTCTGAAACAAGGAAACACGGAAGCACATCAAAATCTATTGCCAAAGGCGCATCTCAGTCAAAAGCAGCCAGTAAAAAGTTGGCTACTCGCAGGAAAAAAAGTGTTGATGATGAACTAGGGTCAAAAGCTGAGTTAAGAATGAGGCTAACACTTGATGAAGAAAAAGCAGCTCGATCTTTCACTTCTTGCTTCCCAAATTTTGTGAAGATCATGAAGAAGTTCAATATCAGTGGTTCATATACATTGAAAATCCCATACCAGTTTTCCACAGAACATCTACCCAACTATAAAACAGAGATCGTGCTTCGAAATTCAAAAGGGGAATGTTGGACTGTGAACTCTGTTCCAGACTCGAAGGGGCGAGTGGTGCATACTTTCTGTGGTGGGTGGATGGCATTTGTACGTGGAAATGATGTCAACATTGGAGATATCTGCATTTTTGAACTTGTTGGTAAGCGAGAGATGCGAGTGCACATTTCTGGCGCTGATAAAAATGGGTTTGATCATCAAGGCGGAGAAGCAACGACTAATGCAGAGTATAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

512

Amino Acids

57.57

Weight (kDa)

9.16

Isoelectric Point (pI)

42.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 44 - 102 2.3e-11 B3 DNA binding domain
B3 PF02362 208 - 292 3.6e-13 B3 DNA binding domain
B3 PF02362 398 - 491 7.6e-14 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 807
AccII CGCG 1 cut(s) 867
AciI CCGC 4 cut(s) 5, 327, 850, 1506
AcoI YGGCCR 2 cut(s) 209, 346
AcsI RAATTY 5 cut(s) 294, 659, 860, 1189, 1303
AfaI GTAC 1 cut(s) 1395
AjnI CCWGG 2 cut(s) 392, 472
AjuI GAANNNNNNNTTGG 2 cut(s) 360, 392
AleI CACNNNNGTG 1 cut(s) 755
Alw21I GWGCWC 2 cut(s) 80, 1467
Alw26I GTCTC 1 cut(s) 219
Alw44I GTGCAC 1 cut(s) 1463
AoxI GGCC 5 cut(s) 41, 209, 324, 346, 390
ApaLI GTGCAC 1 cut(s) 1463
ApeKI GCWGC 3 cut(s) 421, 1058, 1160
ApoI RAATTY 5 cut(s) 294, 659, 860, 1189, 1303
Asp700I GAANNNNTTC 2 cut(s) 617, 1211
AspLEI GCGC 2 cut(s) 1043, 1478
AspS9I GGNCC 3 cut(s) 140, 390, 729
AsuC2I CCSGG 1 cut(s) 910
AsuHPI GGTGA 4 cut(s) 34, 197, 257, 284
AsuII TTCGAA 1 cut(s) 1300
AsuNHI GCTAGC 1 cut(s) 913
AvaII GGWCC 2 cut(s) 140, 729
AxyI CCTNAGG 1 cut(s) 977
BaeGI GKGCMC 1 cut(s) 1467
BalI TGGCCA 1 cut(s) 348
BanII GRGCYC 1 cut(s) 80
Bbv12I GWGCWC 2 cut(s) 80, 1467
BbvI GCAGC 3 cut(s) 408, 1070, 1172
BccI CCATC 5 cut(s) 263, 518, 780, 784, 1378
BciT130I CCWGG 2 cut(s) 394, 474
BclI TGATCA 2 cut(s) 301, 1495
BcnI CCSGG 1 cut(s) 910
BcoDI GTCTC 1 cut(s) 219
BfaI CTAG 8 cut(s) 144, 236, 357, 821, 894, 914, 1109, 1537
BfoI RGCGCY 1 cut(s) 1479
BisI GCNGC 4 cut(s) 327, 422, 1059, 1161
BlsI GCNGC 4 cut(s) 328, 423, 1060, 1162
Bme1390I CCNGG 3 cut(s) 394, 474, 910
Bme18I GGWCC 2 cut(s) 140, 729
BmgT120I GGNCC 3 cut(s) 140, 390, 729
BmrFI CCNGG 3 cut(s) 394, 474, 910
BmsI GCATC 3 cut(s) 15, 1052, 1446
BmtI GCTAGC 1 cut(s) 917
BplI GAGNNNNNCTC 2 cut(s) 28, 60
BpmI CTGGAG 1 cut(s) 903
Bpu14I TTCGAA 1 cut(s) 1300
BpuMI CCSGG 1 cut(s) 910
BsaAI YACGTR 1 cut(s) 1397
BsaI GGTCTC 1 cut(s) 219
BsaJI CCNNGG 1 cut(s) 393
Bse118I RCCGGY 1 cut(s) 211
Bse1I ACTGG 4 cut(s) 93, 886, 1062, 1252
Bse21I CCTNAGG 1 cut(s) 977
BseBI CCWGG 2 cut(s) 394, 474
BseDI CCNNGG 1 cut(s) 393
BseGI GGATG 6 cut(s) 410, 487, 510, 791, 795, 1389
BseMII CTCAG 4 cut(s) 93, 593, 1061, 1113
BseNI ACTGG 4 cut(s) 93, 886, 1062, 1252
BseRI GAGGAG 1 cut(s) 574
BseSI GKGCMC 1 cut(s) 1467
BseXI GCAGC 3 cut(s) 408, 1070, 1172
BseYI CCCAGC 1 cut(s) 447
Bsh1236I CGCG 1 cut(s) 867
BshFI GGCC 5 cut(s) 43, 211, 326, 348, 392
BsiHKAI GWGCWC 2 cut(s) 80, 1467
BsiSI CCGG 2 cut(s) 212, 909
BslFI GGGAC 1 cut(s) 125
BsmAI GTCTC 1 cut(s) 219
BsmFI GGGAC 1 cut(s) 125
BsmI GAATGC 1 cut(s) 157
BsnI GGCC 5 cut(s) 43, 211, 326, 348, 392
Bso31I GGTCTC 1 cut(s) 219
Bsp119I TTCGAA 1 cut(s) 1300
Bsp1286I GDGCHC 2 cut(s) 80, 1467
Bsp143I GATC 5 cut(s) 301, 1166, 1200, 1290, 1495
BspACI CCGC 4 cut(s) 5, 327, 850, 1506
BspANI GGCC 5 cut(s) 43, 211, 326, 348, 392
BspCNI CTCAG 4 cut(s) 92, 594, 1060, 1114
BspFNI CGCG 1 cut(s) 867
BspHI TCATGA 2 cut(s) 609, 1203
BspOI GCTAGC 1 cut(s) 917
BspT104I TTCGAA 1 cut(s) 1300
BspTNI GGTCTC 1 cut(s) 219
BsrFI RCCGGY 1 cut(s) 211
BsrI ACTGG 4 cut(s) 93, 886, 1062, 1252
BssAI RCCGGY 1 cut(s) 211
BssECI CCNNGG 1 cut(s) 393
BssMI GATC 5 cut(s) 301, 1166, 1200, 1290, 1495
Bst2UI CCWGG 2 cut(s) 394, 474
Bst4CI ACNGT 4 cut(s) 289, 686, 733, 1327
Bst6I CTCTTC 1 cut(s) 380
BstBAI YACGTR 1 cut(s) 1397
BstBI TTCGAA 1 cut(s) 1300
BstC8I GCNNGC 3 cut(s) 213, 507, 915
BstDEI CTNAG 5 cut(s) 79, 602, 977, 1047, 1122
BstF5I GGATG 6 cut(s) 410, 487, 510, 791, 795, 1389
BstFNI CGCG 1 cut(s) 867
BstH2I RGCGCY 1 cut(s) 1479
BstHHI GCGC 2 cut(s) 1043, 1478
BstKTI GATC 5 cut(s) 304, 1169, 1203, 1293, 1498
BstMAI GTCTC 1 cut(s) 219
BstMBI GATC 5 cut(s) 301, 1166, 1200, 1290, 1495
BstMWI GCNNNNNNNGC 7 cut(s) 11, 418, 506, 914, 1040, 1360, 1456
BstNI CCWGG 2 cut(s) 394, 474
BstSCI CCNGG 3 cut(s) 392, 472, 908
BstSLI GKGCMC 1 cut(s) 1467
BstUI CGCG 1 cut(s) 867
BstV1I GCAGC 3 cut(s) 408, 1070, 1172
Bsu36I CCTNAGG 1 cut(s) 977
BsuRI GGCC 5 cut(s) 43, 211, 326, 348, 392
BtsCI GGATG 6 cut(s) 410, 487, 510, 791, 795, 1389
BtsIMutI CAGTG 4 cut(s) 285, 634, 672, 1228
Cac8I GCNNGC 3 cut(s) 213, 507, 915
CciI TCATGA 2 cut(s) 609, 1203
CfoI GCGC 2 cut(s) 1043, 1478
Cfr10I RCCGGY 1 cut(s) 211
Cfr13I GGNCC 3 cut(s) 140, 390, 729
CseI GACGC 1 cut(s) 856
Csp6I GTAC 1 cut(s) 1394
CspCI CAANNNNNGTGG 4 cut(s) 610, 645, 1204, 1239
CviAII CATG 5 cut(s) 104, 156, 560, 610, 1204
CviQI GTAC 1 cut(s) 1394
DdeI CTNAG 5 cut(s) 79, 602, 977, 1047, 1122
DpnI GATC 5 cut(s) 303, 1168, 1202, 1292, 1497
DpnII GATC 5 cut(s) 301, 1166, 1200, 1290, 1495
DraI TTTAAA 1 cut(s) 18
EaeI YGGCCR 2 cut(s) 209, 346
Eam1104I CTCTTC 1 cut(s) 380
EarI CTCTTC 1 cut(s) 380
EciI GGCGGA 2 cut(s) 20, 1521
Ecl136II GAGCTC 1 cut(s) 78
Eco147I AGGCCT 1 cut(s) 43
Eco24I GRGCYC 1 cut(s) 80
Eco31I GGTCTC 1 cut(s) 219
Eco32I GATATC 3 cut(s) 549, 829, 1423
Eco47I GGWCC 2 cut(s) 140, 729
Eco53kI GAGCTC 1 cut(s) 78
Eco81I CCTNAGG 1 cut(s) 977
EcoICRI GAGCTC 1 cut(s) 78
EcoRII CCWGG 2 cut(s) 392, 472
EcoRV GATATC 3 cut(s) 549, 829, 1423
EcoT22I ATGCAT 1 cut(s) 157
EcoT38I GRGCYC 1 cut(s) 80
FaeI CATG 5 cut(s) 107, 159, 563, 613, 1207
FaqI GGGAC 1 cut(s) 125
FatI CATG 5 cut(s) 103, 155, 559, 609, 1203
FauI CCCGC 1 cut(s) 843
FauNDI CATATG 1 cut(s) 463
FbaI TGATCA 2 cut(s) 301, 1495
Fnu4HI GCNGC 4 cut(s) 327, 422, 1059, 1161
FokI GGATG 6 cut(s) 417, 494, 497, 798, 802, 1396
FriOI GRGCYC 1 cut(s) 80
Fsp4HI GCNGC 4 cut(s) 327, 422, 1059, 1161
FspBI CTAG 8 cut(s) 144, 236, 357, 821, 894, 914, 1109, 1537
GlaI GCGC 2 cut(s) 1042, 1477
GluI GCNGC 4 cut(s) 327, 422, 1059, 1161
GsaI CCCAGC 1 cut(s) 451
GsuI CTGGAG 1 cut(s) 903
HaeII RGCGCY 1 cut(s) 1479
HaeIII GGCC 5 cut(s) 43, 211, 326, 348, 392
HapII CCGG 2 cut(s) 212, 909
HgaI GACGC 1 cut(s) 856
HhaI GCGC 2 cut(s) 1043, 1478
Hin1II CATG 5 cut(s) 107, 159, 563, 613, 1207
Hin6I GCGC 2 cut(s) 1041, 1476
HinP1I GCGC 2 cut(s) 1041, 1476
HincII GTYRAC 1 cut(s) 1411
HindII GTYRAC 1 cut(s) 1411
HinfI GANTC 4 cut(s) 98, 434, 606, 1343
HpaII CCGG 2 cut(s) 212, 909
HphI GGTGA 4 cut(s) 34, 197, 257, 284
Hpy166II GTNNAC 4 cut(s) 166, 1330, 1411, 1465
Hpy188I TCNGA 4 cut(s) 82, 263, 603, 997
Hpy188III TCNNGA 6 cut(s) 121, 253, 514, 610, 1204, 1340
Hpy8I GTNNAC 4 cut(s) 166, 1330, 1411, 1465
HpyAV CCTTC 7 cut(s) 33, 67, 102, 395, 713, 937, 1342
HpyCH4III ACNGT 4 cut(s) 289, 686, 733, 1327
HpyCH4IV ACGT 1 cut(s) 1396
HpyCH4V TGCA 9 cut(s) 155, 292, 544, 760, 834, 1363, 1428, 1465, 1526
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 418, 506, 914, 1040, 1360, 1456
HpyF3I CTNAG 5 cut(s) 79, 602, 977, 1047, 1122
HpySE526I ACGT 1 cut(s) 1396
Hsp92II CATG 5 cut(s) 107, 159, 563, 613, 1207
HspAI GCGC 2 cut(s) 1041, 1476
KroI GCCGGC 1 cut(s) 211
KroNI GCCGGC 1 cut(s) 213
Ksp22I TGATCA 2 cut(s) 301, 1495
Kzo9I GATC 5 cut(s) 301, 1166, 1200, 1290, 1495
LmnI GCTCC 2 cut(s) 11, 587
Lsp1109I GCAGC 3 cut(s) 408, 1070, 1172
LweI GCATC 3 cut(s) 15, 1052, 1446
MaeI CTAG 8 cut(s) 144, 236, 357, 821, 894, 914, 1109, 1537
MaeII ACGT 1 cut(s) 1396
MaeIII GTNAC 1 cut(s) 245
MalI GATC 5 cut(s) 303, 1168, 1202, 1292, 1497
MboI GATC 5 cut(s) 301, 1166, 1200, 1290, 1495
MboII GAAGA 9 cut(s) 187, 397, 435, 443, 543, 994, 1163, 1210, 1219
MhlI GDGCHC 2 cut(s) 80, 1467
MlsI TGGCCA 1 cut(s) 348
MluCI AATT 7 cut(s) 294, 520, 659, 736, 860, 1189, 1303
MluNI TGGCCA 1 cut(s) 348
MlyI GAGTC 1 cut(s) 1337
MmeI TCCRAC 2 cut(s) 707, 1301
MnlI CCTC 7 cut(s) 54, 316, 381, 391, 595, 776, 1128
Mox20I TGGCCA 1 cut(s) 348
Mph1103I ATGCAT 1 cut(s) 157
MroNI GCCGGC 1 cut(s) 211
MroXI GAANNNNTTC 2 cut(s) 617, 1211
MscI TGGCCA 1 cut(s) 348
MseI TTAA 2 cut(s) 17, 1127
MslI CAYNNNNRTG 1 cut(s) 755
Msp20I TGGCCA 1 cut(s) 348
MspI CCGG 2 cut(s) 212, 909
MspR9I CCNGG 3 cut(s) 394, 474, 910
Mva1269I GAATGC 1 cut(s) 157
MvaI CCWGG 2 cut(s) 394, 474
MvnI CGCG 1 cut(s) 867
MwoI GCNNNNNNNGC 7 cut(s) 11, 418, 506, 914, 1040, 1360, 1456
NaeI GCCGGC 1 cut(s) 213
NciI CCSGG 1 cut(s) 910
NdeI CATATG 1 cut(s) 463
NdeII GATC 5 cut(s) 301, 1166, 1200, 1290, 1495
NgoMIV GCCGGC 1 cut(s) 211
NheI GCTAGC 1 cut(s) 913
NlaIII CATG 5 cut(s) 107, 159, 563, 613, 1207
NmuCI GTSAC 1 cut(s) 245
NsiI ATGCAT 1 cut(s) 157
NspV TTCGAA 1 cut(s) 1300
OliI CACNNNNGTG 1 cut(s) 755
PagI TCATGA 2 cut(s) 609, 1203
PceI AGGCCT 1 cut(s) 43
PctI GAATGC 1 cut(s) 157
PdiI GCCGGC 1 cut(s) 213
PdmI GAANNNNTTC 2 cut(s) 617, 1211
PfeI GAWTC 3 cut(s) 98, 434, 606
PkrI GCNGC 4 cut(s) 328, 423, 1060, 1162
PleI GAGTC 1 cut(s) 1337
PpsI GAGTC 1 cut(s) 1337
Ppu21I YACGTR 1 cut(s) 1397
PsiI TTATAA 1 cut(s) 807
Psp124BI GAGCTC 1 cut(s) 80
Psp6I CCWGG 2 cut(s) 392, 472
PspFI CCCAGC 1 cut(s) 447
PspGI CCWGG 2 cut(s) 392, 472
PspPI GGNCC 3 cut(s) 140, 390, 729
RsaI GTAC 1 cut(s) 1395
RsaNI GTAC 1 cut(s) 1394
RseI CAYNNNNRTG 1 cut(s) 755
SacI GAGCTC 1 cut(s) 80
SaqAI TTAA 2 cut(s) 17, 1127
SatI GCNGC 4 cut(s) 327, 422, 1059, 1161
Sau3AI GATC 5 cut(s) 301, 1166, 1200, 1290, 1495
Sau96I GGNCC 3 cut(s) 140, 390, 729
SchI GAGTC 1 cut(s) 1337
ScrFI CCNGG 3 cut(s) 394, 474, 910
SduI GDGCHC 2 cut(s) 80, 1467
SfaNI GCATC 3 cut(s) 15, 1052, 1446
SfuI TTCGAA 1 cut(s) 1300
SinI GGWCC 2 cut(s) 140, 729
SmiMI CAYNNNNRTG 1 cut(s) 755
Sse9I AATT 7 cut(s) 294, 520, 659, 736, 860, 1189, 1303
SseBI AGGCCT 1 cut(s) 43
SsiI CCGC 4 cut(s) 5, 327, 850, 1506
SspI AATATT 1 cut(s) 649
SspMI CTAG 8 cut(s) 144, 236, 357, 821, 894, 914, 1109, 1537
SstI GAGCTC 1 cut(s) 80
StuI AGGCCT 1 cut(s) 43
StyD4I CCNGG 3 cut(s) 392, 472, 908
TaaI ACNGT 4 cut(s) 289, 686, 733, 1327
TaiI ACGT 1 cut(s) 1399
TaqI TCGA 4 cut(s) 437, 1165, 1300, 1346
TasI AATT 7 cut(s) 294, 520, 659, 736, 860, 1189, 1303
TauI GCSGC 1 cut(s) 329
TfiI GAWTC 3 cut(s) 98, 434, 606
Tru1I TTAA 2 cut(s) 17, 1127
Tru9I TTAA 2 cut(s) 17, 1127
TscAI CASTG 4 cut(s) 292, 634, 672, 1228
TseFI GTSAC 1 cut(s) 245
TseI GCWGC 3 cut(s) 421, 1058, 1160
Tsp45I GTSAC 1 cut(s) 245
TspDTI ATGAA 9 cut(s) 323, 480, 576, 624, 626, 1119, 1164, 1218, 1220
TspGWI ACGGA 3 cut(s) 397, 791, 1026
TspRI CASTG 4 cut(s) 292, 634, 672, 1228
VneI GTGCAC 1 cut(s) 1463
VpaK11BI GGWCC 2 cut(s) 140, 729
XapI RAATTY 5 cut(s) 294, 659, 860, 1189, 1303
XcmI CCANNNNNNNNNTGG 2 cut(s) 878, 1069
XmnI GAANNNNTTC 2 cut(s) 617, 1211
XspI CTAG 8 cut(s) 144, 236, 357, 821, 894, 914, 1109, 1537
Zsp2I ATGCAT 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.