Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0011529

Physical Location & Seq

Genomic Coordinates Forward (+)

63873986 .. 63877755

Gene Structure 3770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG413600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1473 bp

ATGTTGCAGAAAATACCAGAGAGGTTTATGATTCACATGGAAGGGAGAACATCTGGAATGGTTGTATTGTCTGGTCCTAGCGGGAATGCATGGAATGTTCACTTGATTGAACAAAATGGTGATTTGTTCTTCCAATTTGGGTGGCCGGCATTTGTAAGAGACCATTCCCTAGAATGTGGTGACTTCTTGATTTTCAGATATGATGGTGAGTTGCGTTTCACTGTGCAAATTTTTGATCAAACTGCGTGTGAGAAAGAAGCTGCATTTCATTCCCAATGTGGCCAAAGTTCTAGCTACTTTGAAAAACTTATTGGACGGAAGAGGGCCAGGGAGGAAGGATGTGGGCTTGACAGGCTGCTATTTGAAGAATCAACTTCTTCCCAGCAATCAAAGACATATGAAAATCCTGGTTTGGATGTTGTCATATACAAAGCAAAGCAAGCCATCCAGAATAATTTGAATGATAGAGTTTCTATGCAGATATCTTCGGCACATGAAGTAGCTCAATCATTTAGCTCCTCTAATCCTTATTTTCTGAGAATCATGAAAAGTTTCAACATCAGCGGTTCATATACTTTGAATATTCCATATAAATTTTCAGTGGCACATCTACCAAACTGTAAAGTAAAGATTGTCCTTCTAAACTTGAAAGGAGAAAGTTGGACCGTCAATTCTGTGCCGACCACAAGAGTGCATACAAGTCATACTCTTTGTGGAGGATGGATGGCTTTTGTCCGTTATAATGACATAAAGCTAGGAGATATCTGCATTTTTGAACTTGTGCGGGAGTGTGAATTTCGCGTCCATATTCAAACTGGAGAAACATCTAGTAGGTTATGTGCCGGGCTAGCTTTGAAAGGTTTGTCAAAGAAAGTGAAGGGGAACTCTCCTAAAGTCCATACAAAGAGCCTAAGGAAGATAGAGATGTCTGAAACAAGGAAACATGGAAGCACATCAAAATCTATTGCCAAAGGCGCATCTCAGTCAAAAGCAGCCAGTAAAAAGTTGGTTACTCGCAGGAAAAAAAGTGTTGATGATGAACTAGGGTCAAAAGCTGAGTTAAGAATGAGGTTAACACTTGATGAAGAAAAAGCAGCTCGATCTTTCACTTCTTGCTTCCCAAATTTTGTGAAGATCATGAAGAAGTTCAATATCAGTGGTTCATATACATTGAAAATCCCATACCAGTTTTCCACAGAACATCTACCCAACTATAAAACAGAGATCGTGCTTCGAAATTCAAAAGGGGAATGTTGGACCGTGAACTCTGTTCCAGACTCGAAAGGGCGAGTGGTGCATACTTTCTGTGGTGGGTGGATGGCATTTGTACGTGGAAATGATGTCAACATTGGAGATATCTGCATTTTTGAACTTGTTGGTAAGCGAGAGATGCGAGTGCACATTTCTGGCGCTGATAAAAATGGGGTTGATCATCAAGGTGGAGAAGCAACGACTAATGCAGAGTATAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

490

Amino Acids

55.06

Weight (kDa)

9.25

Isoelectric Point (pI)

37.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	5 - 80	5.6e-15	B3 DNA binding domain
B3	PF02362	186 - 270	3.4e-13	B3 DNA binding domain
B3	PF02362	376 - 469	7.1e-14	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011529)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40640
malus_domestica	MD08G1039600.v1.1 MD15G1034200.v1.1
prunus_persica	Prupe.1G388200_v2.0.a1 Prupe.1G388200_v2.0.a1
pyrus_communis	pycom05g03900 pycom08g03170 pycom13g02130 pycom15g03150
rosa_chinensis	RchiOBHm_Chr6g0300031
rosa_laevigata	RLG00000011371
rosa_multiflora	Rmu_co8370125.1_g000001 Rmu_sc0010665.1_g000002
rosa_roxburghii	Rroxscaffold_7G00168180
rosa_rugosa	Rorug06G0293700
rosa_samantha	Rh6AG405300 Rh6BG413600 Rh6CG420700 Rh6DG406300
rosa_wichuraiana	Rw6G035470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	741
AccII	CGCG	1 cut(s)	801
AciI	CCGC	3 cut(s)	81, 564, 784
AcoI	YGGCCR	2 cut(s)	143, 280
AcsI	RAATTY	5 cut(s)	228, 593, 794, 1123, 1237
AfaI	GTAC	1 cut(s)	1329
AjnI	CCWGG	2 cut(s)	326, 406
AjuI	GAANNNNNNNTTGG	2 cut(s)	294, 326
AleI	CACNNNNGTG	1 cut(s)	689
AluBI	AGCT	9 cut(s)	260, 294, 503, 516, 754, 851, 1055, 1097, 1470
AluI	AGCT	9 cut(s)	260, 294, 503, 516, 754, 851, 1055, 1097, 1470
Alw21I	GWGCWC	1 cut(s)	1401
Alw26I	GTCTC	1 cut(s)	153
Alw44I	GTGCAC	1 cut(s)	1397
AoxI	GGCC	3 cut(s)	143, 280, 324
ApaLI	GTGCAC	1 cut(s)	1397
ApeKI	GCWGC	4 cut(s)	260, 355, 992, 1094
ApoI	RAATTY	5 cut(s)	228, 593, 794, 1123, 1237
Asp700I	GAANNNNTTC	2 cut(s)	551, 1145
AspLEI	GCGC	2 cut(s)	977, 1412
AspS9I	GGNCC	4 cut(s)	74, 324, 663, 1257
AsuC2I	CCSGG	1 cut(s)	844
AsuHPI	GGTGA	3 cut(s)	131, 191, 218
AsuII	TTCGAA	1 cut(s)	1234
AsuNHI	GCTAGC	1 cut(s)	847
AvaII	GGWCC	3 cut(s)	74, 663, 1257
AxyI	CCTNAGG	1 cut(s)	911
BaeGI	GKGCMC	1 cut(s)	1401
BalI	TGGCCA	1 cut(s)	282
Bbv12I	GWGCWC	1 cut(s)	1401
BbvI	GCAGC	4 cut(s)	247, 342, 1004, 1106
BccI	CCATC	5 cut(s)	197, 452, 714, 718, 1312
BciT130I	CCWGG	2 cut(s)	328, 408
BclI	TGATCA	2 cut(s)	235, 1429
BcnI	CCSGG	1 cut(s)	844
BcoDI	GTCTC	1 cut(s)	153
BfaI	CTAG	8 cut(s)	78, 170, 291, 755, 828, 848, 1043, 1471
BfoI	RGCGCY	1 cut(s)	1413
BisI	GCNGC	4 cut(s)	261, 356, 993, 1095
BlsI	GCNGC	4 cut(s)	262, 357, 994, 1096
Bme1390I	CCNGG	3 cut(s)	328, 408, 844
Bme18I	GGWCC	3 cut(s)	74, 663, 1257
BmgT120I	GGNCC	4 cut(s)	74, 324, 663, 1257
BmrFI	CCNGG	3 cut(s)	328, 408, 844
BmsI	GCATC	2 cut(s)	986, 1380
BmtI	GCTAGC	1 cut(s)	851
BpmI	CTGGAG	1 cut(s)	837
Bpu14I	TTCGAA	1 cut(s)	1234
BpuMI	CCSGG	1 cut(s)	844
BsaAI	YACGTR	1 cut(s)	1331
BsaI	GGTCTC	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	327
Bse118I	RCCGGY	1 cut(s)	145
Bse1I	ACTGG	3 cut(s)	820, 996, 1186
Bse21I	CCTNAGG	1 cut(s)	911
BseBI	CCWGG	2 cut(s)	328, 408
BseDI	CCNNGG	1 cut(s)	327
BseGI	GGATG	6 cut(s)	344, 421, 444, 725, 729, 1323
BseMII	CTCAG	3 cut(s)	527, 995, 1047
BseNI	ACTGG	3 cut(s)	820, 996, 1186
BseRI	GAGGAG	1 cut(s)	508
BseSI	GKGCMC	1 cut(s)	1401
BseXI	GCAGC	4 cut(s)	247, 342, 1004, 1106
BseYI	CCCAGC	1 cut(s)	381
Bsh1236I	CGCG	1 cut(s)	801
BshFI	GGCC	3 cut(s)	145, 282, 326
BsiHKAI	GWGCWC	1 cut(s)	1401
BsiSI	CCGG	2 cut(s)	146, 843
BsmAI	GTCTC	1 cut(s)	153
BsmI	GAATGC	1 cut(s)	91
BsnI	GGCC	3 cut(s)	145, 282, 326
Bso31I	GGTCTC	1 cut(s)	153
Bsp119I	TTCGAA	1 cut(s)	1234
Bsp1286I	GDGCHC	1 cut(s)	1401
Bsp143I	GATC	5 cut(s)	235, 1100, 1134, 1224, 1429
BspACI	CCGC	3 cut(s)	81, 564, 784
BspANI	GGCC	3 cut(s)	145, 282, 326
BspCNI	CTCAG	3 cut(s)	528, 994, 1048
BspFNI	CGCG	1 cut(s)	801
BspHI	TCATGA	2 cut(s)	543, 1137
BspOI	GCTAGC	1 cut(s)	851
BspT104I	TTCGAA	1 cut(s)	1234
BspTNI	GGTCTC	1 cut(s)	153
BsrFI	RCCGGY	1 cut(s)	145
BsrI	ACTGG	3 cut(s)	820, 996, 1186
BssAI	RCCGGY	1 cut(s)	145
BssECI	CCNNGG	1 cut(s)	327
BssMI	GATC	5 cut(s)	235, 1100, 1134, 1224, 1429
Bst2UI	CCWGG	2 cut(s)	328, 408
Bst4CI	ACNGT	4 cut(s)	223, 620, 667, 1261
Bst6I	CTCTTC	1 cut(s)	314
BstBAI	YACGTR	1 cut(s)	1331
BstBI	TTCGAA	1 cut(s)	1234
BstC8I	GCNNGC	3 cut(s)	147, 441, 849
BstDEI	CTNAG	4 cut(s)	536, 911, 981, 1056
BstF5I	GGATG	6 cut(s)	344, 421, 444, 725, 729, 1323
BstFNI	CGCG	1 cut(s)	801
BstH2I	RGCGCY	1 cut(s)	1413
BstHHI	GCGC	2 cut(s)	977, 1412
BstKTI	GATC	5 cut(s)	238, 1103, 1137, 1227, 1432
BstMAI	GTCTC	1 cut(s)	153
BstMBI	GATC	5 cut(s)	235, 1100, 1134, 1224, 1429
BstMWI	GCNNNNNNNGC	6 cut(s)	352, 440, 848, 974, 1294, 1390
BstNI	CCWGG	2 cut(s)	328, 408
BstSCI	CCNGG	3 cut(s)	326, 406, 842
BstSLI	GKGCMC	1 cut(s)	1401
BstUI	CGCG	1 cut(s)	801
BstV1I	GCAGC	4 cut(s)	247, 342, 1004, 1106
Bsu36I	CCTNAGG	1 cut(s)	911
BsuRI	GGCC	3 cut(s)	145, 282, 326
BtsCI	GGATG	6 cut(s)	344, 421, 444, 725, 729, 1323
BtsIMutI	CAGTG	3 cut(s)	219, 606, 1162
Cac8I	GCNNGC	3 cut(s)	147, 441, 849
CciI	TCATGA	2 cut(s)	543, 1137
CfoI	GCGC	2 cut(s)	977, 1412
Cfr10I	RCCGGY	1 cut(s)	145
Cfr13I	GGNCC	4 cut(s)	74, 324, 663, 1257
CseI	GACGC	1 cut(s)	790
Csp6I	GTAC	1 cut(s)	1328
CspCI	CAANNNNNGTGG	4 cut(s)	122, 157, 1138, 1173
CviAII	CATG	6 cut(s)	37, 90, 494, 544, 944, 1138
CviQI	GTAC	1 cut(s)	1328
DdeI	CTNAG	4 cut(s)	536, 911, 981, 1056
DpnI	GATC	5 cut(s)	237, 1102, 1136, 1226, 1431
DpnII	GATC	5 cut(s)	235, 1100, 1134, 1224, 1429
EaeI	YGGCCR	2 cut(s)	143, 280
Eam1104I	CTCTTC	1 cut(s)	314
EarI	CTCTTC	1 cut(s)	314
Eco31I	GGTCTC	1 cut(s)	153
Eco32I	GATATC	3 cut(s)	483, 763, 1357
Eco47I	GGWCC	3 cut(s)	74, 663, 1257
Eco81I	CCTNAGG	1 cut(s)	911
EcoRII	CCWGG	2 cut(s)	326, 406
EcoRV	GATATC	3 cut(s)	483, 763, 1357
EcoT22I	ATGCAT	1 cut(s)	91
FaeI	CATG	6 cut(s)	40, 93, 497, 547, 947, 1141
FatI	CATG	6 cut(s)	36, 89, 493, 543, 943, 1137
FauI	CCCGC	2 cut(s)	74, 777
FauNDI	CATATG	1 cut(s)	397
FbaI	TGATCA	2 cut(s)	235, 1429
Fnu4HI	GCNGC	4 cut(s)	261, 356, 993, 1095
FokI	GGATG	6 cut(s)	351, 428, 431, 732, 736, 1330
Fsp4HI	GCNGC	4 cut(s)	261, 356, 993, 1095
FspBI	CTAG	8 cut(s)	78, 170, 291, 755, 828, 848, 1043, 1471
GlaI	GCGC	2 cut(s)	976, 1411
GluI	GCNGC	4 cut(s)	261, 356, 993, 1095
GsaI	CCCAGC	1 cut(s)	385
GsuI	CTGGAG	1 cut(s)	837
HaeII	RGCGCY	1 cut(s)	1413
HaeIII	GGCC	3 cut(s)	145, 282, 326
HapII	CCGG	2 cut(s)	146, 843
HgaI	GACGC	1 cut(s)	790
HhaI	GCGC	2 cut(s)	977, 1412
Hin1II	CATG	6 cut(s)	40, 93, 497, 547, 947, 1141
Hin6I	GCGC	2 cut(s)	975, 1410
HinP1I	GCGC	2 cut(s)	975, 1410
HincII	GTYRAC	2 cut(s)	1074, 1345
HindII	GTYRAC	2 cut(s)	1074, 1345
HinfI	GANTC	4 cut(s)	31, 368, 540, 1277
HpaI	GTTAAC	1 cut(s)	1074
HpaII	CCGG	2 cut(s)	146, 843
HphI	GGTGA	3 cut(s)	131, 191, 218
Hpy166II	GTNNAC	5 cut(s)	100, 1074, 1264, 1345, 1399
Hpy188I	TCNGA	3 cut(s)	197, 537, 931
Hpy188III	TCNNGA	6 cut(s)	54, 187, 448, 544, 1138, 1274
Hpy8I	GTNNAC	5 cut(s)	100, 1074, 1264, 1345, 1399
HpyAV	CCTTC	4 cut(s)	35, 329, 647, 871
HpyCH4III	ACNGT	4 cut(s)	223, 620, 667, 1261
HpyCH4IV	ACGT	1 cut(s)	1330
HpyF10VI	GCNNNNNNNGC	6 cut(s)	352, 440, 848, 974, 1294, 1390
HpyF3I	CTNAG	4 cut(s)	536, 911, 981, 1056
HpySE526I	ACGT	1 cut(s)	1330
Hsp92II	CATG	6 cut(s)	40, 93, 497, 547, 947, 1141
HspAI	GCGC	2 cut(s)	975, 1410
KroI	GCCGGC	1 cut(s)	145
KroNI	GCCGGC	1 cut(s)	147
Ksp22I	TGATCA	2 cut(s)	235, 1429
KspAI	GTTAAC	1 cut(s)	1074
Kzo9I	GATC	5 cut(s)	235, 1100, 1134, 1224, 1429
LmnI	GCTCC	1 cut(s)	521
Lsp1109I	GCAGC	4 cut(s)	247, 342, 1004, 1106
LweI	GCATC	2 cut(s)	986, 1380
MaeI	CTAG	8 cut(s)	78, 170, 291, 755, 828, 848, 1043, 1471
MaeII	ACGT	1 cut(s)	1330
MaeIII	GTNAC	2 cut(s)	179, 1009
MalI	GATC	5 cut(s)	237, 1102, 1136, 1226, 1431
MboI	GATC	5 cut(s)	235, 1100, 1134, 1224, 1429
MboII	GAAGA	9 cut(s)	121, 331, 369, 377, 477, 928, 1097, 1144, 1153
MhlI	GDGCHC	1 cut(s)	1401
MlsI	TGGCCA	1 cut(s)	282
MluCI	AATT	8 cut(s)	134, 228, 454, 593, 670, 794, 1123, 1237
MluNI	TGGCCA	1 cut(s)	282
MlyI	GAGTC	1 cut(s)	1271
MmeI	TCCRAC	2 cut(s)	641, 1235
MnlI	CCTC	6 cut(s)	15, 315, 325, 529, 710, 1062
Mox20I	TGGCCA	1 cut(s)	282
Mph1103I	ATGCAT	1 cut(s)	91
MroNI	GCCGGC	1 cut(s)	145
MroXI	GAANNNNTTC	2 cut(s)	551, 1145
MscI	TGGCCA	1 cut(s)	282
MseI	TTAA	2 cut(s)	1061, 1073
MslI	CAYNNNNRTG	2 cut(s)	689, 1437
Msp20I	TGGCCA	1 cut(s)	282
MspA1I	CMGCKG	1 cut(s)	564
MspI	CCGG	2 cut(s)	146, 843
MspR9I	CCNGG	3 cut(s)	328, 408, 844
Mva1269I	GAATGC	1 cut(s)	91
MvaI	CCWGG	2 cut(s)	328, 408
MvnI	CGCG	1 cut(s)	801
MwoI	GCNNNNNNNGC	6 cut(s)	352, 440, 848, 974, 1294, 1390
NaeI	GCCGGC	1 cut(s)	147
NciI	CCSGG	1 cut(s)	844
NdeI	CATATG	1 cut(s)	397
NdeII	GATC	5 cut(s)	235, 1100, 1134, 1224, 1429
NgoMIV	GCCGGC	1 cut(s)	145
NheI	GCTAGC	1 cut(s)	847
NlaIII	CATG	6 cut(s)	40, 93, 497, 547, 947, 1141
NmuCI	GTSAC	1 cut(s)	179
NsiI	ATGCAT	1 cut(s)	91
NspV	TTCGAA	1 cut(s)	1234
OliI	CACNNNNGTG	1 cut(s)	689
PagI	TCATGA	2 cut(s)	543, 1137
PctI	GAATGC	1 cut(s)	91
PdiI	GCCGGC	1 cut(s)	147
PdmI	GAANNNNTTC	2 cut(s)	551, 1145
PfeI	GAWTC	3 cut(s)	31, 368, 540
PkrI	GCNGC	4 cut(s)	262, 357, 994, 1096
PleI	GAGTC	1 cut(s)	1271
PpsI	GAGTC	1 cut(s)	1271
Ppu21I	YACGTR	1 cut(s)	1331
PsiI	TTATAA	1 cut(s)	741
Psp6I	CCWGG	2 cut(s)	326, 406
PspFI	CCCAGC	1 cut(s)	381
PspGI	CCWGG	2 cut(s)	326, 406
PspPI	GGNCC	4 cut(s)	74, 324, 663, 1257
RsaI	GTAC	1 cut(s)	1329
RsaNI	GTAC	1 cut(s)	1328
RseI	CAYNNNNRTG	2 cut(s)	689, 1437
SaqAI	TTAA	2 cut(s)	1061, 1073
SatI	GCNGC	4 cut(s)	261, 356, 993, 1095
Sau3AI	GATC	5 cut(s)	235, 1100, 1134, 1224, 1429
Sau96I	GGNCC	4 cut(s)	74, 324, 663, 1257
SchI	GAGTC	1 cut(s)	1271
ScrFI	CCNGG	3 cut(s)	328, 408, 844
SduI	GDGCHC	1 cut(s)	1401
SfaNI	GCATC	2 cut(s)	986, 1380
SfuI	TTCGAA	1 cut(s)	1234
SinI	GGWCC	3 cut(s)	74, 663, 1257
SmiMI	CAYNNNNRTG	2 cut(s)	689, 1437
Sse9I	AATT	8 cut(s)	134, 228, 454, 593, 670, 794, 1123, 1237
SsiI	CCGC	3 cut(s)	81, 564, 784
SspI	AATATT	1 cut(s)	583
SspMI	CTAG	8 cut(s)	78, 170, 291, 755, 828, 848, 1043, 1471
StyD4I	CCNGG	3 cut(s)	326, 406, 842
TaaI	ACNGT	4 cut(s)	223, 620, 667, 1261
TaiI	ACGT	1 cut(s)	1333
TaqI	TCGA	3 cut(s)	1099, 1234, 1280
TasI	AATT	8 cut(s)	134, 228, 454, 593, 670, 794, 1123, 1237
TfiI	GAWTC	3 cut(s)	31, 368, 540
Tru1I	TTAA	2 cut(s)	1061, 1073
Tru9I	TTAA	2 cut(s)	1061, 1073
TscAI	CASTG	3 cut(s)	226, 606, 1162
TseFI	GTSAC	1 cut(s)	179
TseI	GCWGC	4 cut(s)	260, 355, 992, 1094
Tsp45I	GTSAC	1 cut(s)	179
TspDTI	ATGAA	9 cut(s)	257, 414, 510, 558, 560, 1053, 1098, 1152, 1154
TspGWI	ACGGA	2 cut(s)	331, 725
TspRI	CASTG	3 cut(s)	226, 606, 1162
VneI	GTGCAC	1 cut(s)	1397
VpaK11BI	GGWCC	3 cut(s)	74, 663, 1257
XapI	RAATTY	5 cut(s)	228, 593, 794, 1123, 1237
XcmI	CCANNNNNNNNNTGG	2 cut(s)	812, 1003
XmnI	GAANNNNTTC	2 cut(s)	551, 1145
XspI	CTAG	8 cut(s)	78, 170, 291, 755, 828, 848, 1043, 1471
Zsp2I	ATGCAT	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.