Prupe.1G388200_v2.0.a1

B3 domain-containing protein Os01g0723500-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
34707930 .. 34711759
3830 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G388200.1

Sequence Viewer

Length: 1704 bp
ATGGCAGAAGAAGCTCAGAAGGAGACGTCGAATGCGAGAAGGCCTCACTTCTTTGCGTTTTATTCTGCTGATTTGAGCTCAGAAAGACTGAAAATACCAGAAAGATTTATGATACACATGGAAGGTAGAACATCCGGGTTAGTTTCATTGTTTGGTCCTAGCGGGAACGCATGGAATGTTGACTTGATTCAGAAAAATGGTGACTTGTTCTTTCATCATGGGTGGCCAGCATTTGTGAGAGATCATTTTGTGGAATGTGGTGACTTCTTGATTTTCAGATATGATGGTGAGTTGTGTTTCACTGTGCTTATTTTTGATCAAAGTGCATGTGAGAAAGAAGCCGCATTTCATTCTGAATGTGGCCAAGACTCTAGCAATTTTGAAAAATATATGGGACGAAAAAGGGGCAGGGAGGAGGCTGCATCATCTGGCAAACTGGTTGATGGTGTGGCAAAGAAAATGAGAGATTCCAGCAGTGAGGAAGGATGCGGACATGAGGGTGTAATGTGTGAAGAAGCAACTTGTTCCAAGGAAATTAAGCGAGCTGAAAAGCCTGGTTTGGATATTGTTCTTTGTAAAGCTAATGCATCCATCCAAAATATGTGCGGAAAAGGAGATGGATTAAATGTGAATGGTAGAGTTTGTGTGCAGATGTCGTCGGCGCATGAAATAGCTCAATCATTTAGCTCCTCTAACCCTTATTTTGTGAGAATCATGAAAAGTTTCAACATCAGTGGTTCATATACTCTGAACATCCCGTGTAAATTTTCGGTGGCACATCTACCCAACTGCAAAGTAAAGCTTGTCCTTCATAATTGGAAAGGAGAAAGTTGGACCGTCAATTCTGTGCCAAGTACGAGAGTGCATACAAGTCATACGCTCTGTGGAGGATGGATGGCTTTTGTCCGTTACAATGACATAAAGCTTGGAGATATCTGCATTTTTGAACTTGTGCGTGAGTGTGAATTCCGTGTCCATGTTCAAAGTGGAGAAACATCTAGTTGGTTAAGTGCTGAGCTGGCTCTCCCTTCAATTAAAACGTTCAAAAGTTTGTCAAAGATAATGACAGGGAACTCTCCTAAAGTCCATTCAAAGAGCATAAGAAAGATAGAGAAAGCTGATAAAATAGCACCAAAGAAGTTTCAAGAAGCTGCTTTCACTAATGACGCAAGGAAATATGGTAGCACATCAAAGTCTCTTACTAAAGTTTCACTCTCTCAGTCAAAAGCTGCCAGTAAAAAGTTGGTCAATCACCGGAAAAAAGTTGTTGAAGATGAACTAAACCCGGGAAGTAGTTTGAGAATGAGGTTAACACTTGATGAAGAAAGAGCGGCTCGATCGTTCGCTTCTTGTTTCCCGAGTTTTGTGAAAATCATGAAGAAGTTCAACATCTGCGGTTCATATACATTGAAAATCCCGTACCAGTTTTCCACAGAACACCTCCCCAACTATAAAACAGAGATTGTTCTTCGAAATTCAAAAGGGGAATGTTGGACTGTGAATTCTGTCCCAGACTCGAAAGGGCGAGTGGTGCATACATTTTGTGGAGGATGGATGGCATTTGTACGCGGAAATGATGTCAACATTGGAGATATTTGCATTTTTGAGCTTGTTGGTAAGCGTGAAATGCAAGTGCACATTTCTGGTGTTGGTAAAAAGGGGTTTGACCATCAAGATGGAGAAGCAACATCTAATGCAGTGTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

568

Amino Acids

63.26

Weight (kDa)

8.89

Isoelectric Point (pI)

38.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 29
AccBSI CCGCTC 1 cut(s) 1331
AccII CGCG 1 cut(s) 1569
AciI CCGC 7 cut(s) 162, 342, 489, 606, 1331, 1395, 1569
AclI AACGTT 1 cut(s) 1040
AcoI YGGCCR 2 cut(s) 224, 361
AcsI RAATTY 4 cut(s) 764, 965, 1474, 1501
AcyI GRCGYC 1 cut(s) 26
AfaI GTAC 3 cut(s) 856, 1421, 1566
AjnI CCWGG 1 cut(s) 553
Alw21I GWGCWC 2 cut(s) 80, 1638
Alw26I GTCTC 2 cut(s) 17, 1200
Alw44I GTGCAC 1 cut(s) 1634
Ama87I CYCGRG 2 cut(s) 1285, 1357
AoxI GGCC 3 cut(s) 41, 224, 361
ApaLI GTGCAC 1 cut(s) 1634
ApeKI GCWGC 3 cut(s) 419, 1151, 1229
ApoI RAATTY 4 cut(s) 764, 965, 1474, 1501
Asp700I GAANNNNTTC 2 cut(s) 722, 1382
AspLEI GCGC 1 cut(s) 664
AspS9I GGNCC 2 cut(s) 155, 834
AsuC2I CCSGG 3 cut(s) 136, 1286, 1287
AsuHPI GGTGA 4 cut(s) 212, 272, 299, 1244
AsuII TTCGAA 1 cut(s) 1471
AvaI CYCGRG 2 cut(s) 1285, 1357
AvaII GGWCC 2 cut(s) 155, 834
BaeGI GKGCMC 1 cut(s) 1638
BalI TGGCCA 2 cut(s) 226, 363
BanII GRGCYC 1 cut(s) 80
Bbv12I GWGCWC 2 cut(s) 80, 1638
BbvI GCAGC 3 cut(s) 406, 1138, 1216
BciT130I CCWGG 1 cut(s) 555
BclI TGATCA 1 cut(s) 316
BcnI CCSGG 3 cut(s) 136, 1286, 1287
BcoDI GTCTC 2 cut(s) 17, 1200
BfaI CTAG 3 cut(s) 159, 372, 999
BisI GCNGC 5 cut(s) 342, 420, 1152, 1230, 1332
BlpI GCTNAGC 1 cut(s) 1014
BlsI GCNGC 5 cut(s) 343, 421, 1153, 1231, 1333
Bme1390I CCNGG 4 cut(s) 136, 555, 1286, 1287
Bme18I GGWCC 2 cut(s) 155, 834
BmeT110I CYCGRG 2 cut(s) 1285, 1357
BmgT120I GGNCC 2 cut(s) 155, 834
BmrFI CCNGG 4 cut(s) 136, 555, 1286, 1287
BmsI GCATC 3 cut(s) 431, 476, 596
BplI GAGNNNNNCTC 2 cut(s) 28, 60
Bpu1102I GCTNAGC 1 cut(s) 1014
Bpu14I TTCGAA 1 cut(s) 1471
BpuMI CCSGG 3 cut(s) 136, 1286, 1287
BsaHI GRCGYC 1 cut(s) 26
BsaJI CCNNGG 2 cut(s) 528, 1285
BsaWI WCCGGW 1 cut(s) 1254
Bse1I ACTGG 3 cut(s) 441, 1233, 1423
BseBI CCWGG 1 cut(s) 555
BseDI CCNNGG 2 cut(s) 528, 1285
BseGI GGATG 9 cut(s) 131, 491, 587, 591, 753, 896, 900, 1556, 1560
BseMII CTCAG 4 cut(s) 29, 93, 1005, 1232
BseNI ACTGG 3 cut(s) 441, 1233, 1423
BseRI GAGGAG 2 cut(s) 428, 679
BseSI GKGCMC 1 cut(s) 1638
BseXI GCAGC 3 cut(s) 406, 1138, 1216
BsgI GTGCAG 1 cut(s) 668
Bsh1236I CGCG 1 cut(s) 1569
Bsh1285I CGRYCG 1 cut(s) 1340
BshFI GGCC 3 cut(s) 43, 226, 363
BsiEI CGRYCG 1 cut(s) 1340
BsiHKAI GWGCWC 2 cut(s) 80, 1638
BsiHKCI CYCGRG 2 cut(s) 1285, 1357
BsiSI CCGG 3 cut(s) 135, 1255, 1286
BslFI GGGAC 2 cut(s) 408, 1493
BsmAI GTCTC 2 cut(s) 17, 1200
BsmBI CGTCTC 1 cut(s) 17
BsmFI GGGAC 2 cut(s) 408, 1493
BsmI GAATGC 1 cut(s) 37
BsnI GGCC 3 cut(s) 43, 226, 363
BsoBI CYCGRG 2 cut(s) 1285, 1357
Bsp119I TTCGAA 1 cut(s) 1471
Bsp1286I GDGCHC 2 cut(s) 80, 1638
Bsp143I GATC 3 cut(s) 241, 316, 1337
Bsp1720I GCTNAGC 1 cut(s) 1014
BspACI CCGC 7 cut(s) 162, 342, 489, 606, 1331, 1395, 1569
BspANI GGCC 3 cut(s) 43, 226, 363
BspCNI CTCAG 4 cut(s) 28, 92, 1006, 1231
BspFNI CGCG 1 cut(s) 1569
BspHI TCATGA 2 cut(s) 714, 1374
BspT104I TTCGAA 1 cut(s) 1471
BsrBI CCGCTC 1 cut(s) 1331
BsrI ACTGG 3 cut(s) 441, 1233, 1423
BssECI CCNNGG 2 cut(s) 528, 1285
BssMI GATC 3 cut(s) 241, 316, 1337
BssNI GRCGYC 1 cut(s) 26
BssT1I CCWWGG 1 cut(s) 528
Bst2UI CCWGG 1 cut(s) 555
Bst4CI ACNGT 3 cut(s) 304, 838, 1498
BstACI GRCGYC 1 cut(s) 26
BstBI TTCGAA 1 cut(s) 1471
BstC8I GCNNGC 3 cut(s) 228, 543, 1020
BstDEI CTNAG 4 cut(s) 15, 79, 1014, 1218
BstF5I GGATG 9 cut(s) 131, 491, 587, 591, 753, 896, 900, 1556, 1560
BstFNI CGCG 1 cut(s) 1569
BstHHI GCGC 1 cut(s) 664
BstKTI GATC 3 cut(s) 244, 319, 1340
BstMAI GTCTC 2 cut(s) 17, 1200
BstMBI GATC 3 cut(s) 241, 316, 1337
BstMCI CGRYCG 1 cut(s) 1340
BstMWI GCNNNNNNNGC 4 cut(s) 11, 1019, 1531, 1627
BstNI CCWGG 1 cut(s) 555
BstNSI RCATGY 1 cut(s) 330
BstSCI CCNGG 4 cut(s) 134, 553, 1284, 1285
BstSLI GKGCMC 1 cut(s) 1638
BstUI CGCG 1 cut(s) 1569
BstV1I GCAGC 3 cut(s) 406, 1138, 1216
BstXI CCANNNNNNTGG 1 cut(s) 1676
BsuRI GGCC 3 cut(s) 43, 226, 363
BtsCI GGATG 9 cut(s) 131, 491, 587, 591, 753, 896, 900, 1556, 1560
BtsI GCAGTG 2 cut(s) 481, 1704
BtsIMutI CAGTG 4 cut(s) 300, 481, 739, 1704
Cac8I GCNNGC 3 cut(s) 228, 543, 1020
CciI TCATGA 2 cut(s) 714, 1374
CfoI GCGC 1 cut(s) 664
Cfr13I GGNCC 2 cut(s) 155, 834
Cfr9I CCCGGG 1 cut(s) 1285
CseI GACGC 1 cut(s) 1175
Csp6I GTAC 3 cut(s) 855, 1420, 1565
CspCI CAANNNNNGTGG 2 cut(s) 715, 750
CviAII CATG 9 cut(s) 118, 171, 218, 327, 494, 665, 715, 977, 1375
CviQI GTAC 3 cut(s) 855, 1420, 1565
DdeI CTNAG 4 cut(s) 15, 79, 1014, 1218
DpnI GATC 3 cut(s) 243, 318, 1339
DpnII GATC 3 cut(s) 241, 316, 1337
EaeI YGGCCR 2 cut(s) 224, 361
Ecl136II GAGCTC 1 cut(s) 78
Eco130I CCWWGG 1 cut(s) 528
Eco147I AGGCCT 1 cut(s) 43
Eco24I GRGCYC 1 cut(s) 80
Eco32I GATATC 1 cut(s) 934
Eco47I GGWCC 2 cut(s) 155, 834
Eco53kI GAGCTC 1 cut(s) 78
Eco88I CYCGRG 2 cut(s) 1285, 1357
EcoICRI GAGCTC 1 cut(s) 78
EcoRI GAATTC 2 cut(s) 965, 1501
EcoRII CCWGG 1 cut(s) 553
EcoRV GATATC 1 cut(s) 934
EcoT14I CCWWGG 1 cut(s) 528
EcoT22I ATGCAT 1 cut(s) 589
EcoT38I GRGCYC 1 cut(s) 80
ErhI CCWWGG 1 cut(s) 528
Esp3I CGTCTC 1 cut(s) 17
FaeI CATG 9 cut(s) 121, 174, 221, 330, 497, 668, 718, 980, 1378
FalI AAGNNNNNCTT 2 cut(s) 786, 818
FaqI GGGAC 2 cut(s) 408, 1493
FatI CATG 9 cut(s) 117, 170, 217, 326, 493, 664, 714, 976, 1374
FauI CCCGC 1 cut(s) 155
FbaI TGATCA 1 cut(s) 316
Fnu4HI GCNGC 5 cut(s) 342, 420, 1152, 1230, 1332
FokI GGATG 9 cut(s) 118, 498, 574, 578, 740, 903, 907, 1563, 1567
FriOI GRGCYC 1 cut(s) 80
Fsp4HI GCNGC 5 cut(s) 342, 420, 1152, 1230, 1332
FspBI CTAG 3 cut(s) 159, 372, 999
GlaI GCGC 1 cut(s) 663
GluI GCNGC 5 cut(s) 342, 420, 1152, 1230, 1332
HaeIII GGCC 3 cut(s) 43, 226, 363
HapII CCGG 3 cut(s) 135, 1255, 1286
HgaI GACGC 1 cut(s) 1175
HhaI GCGC 1 cut(s) 664
Hin1I GRCGYC 1 cut(s) 26
Hin1II CATG 9 cut(s) 121, 174, 221, 330, 497, 668, 718, 980, 1378
Hin6I GCGC 1 cut(s) 662
HinP1I GCGC 1 cut(s) 662
HincII GTYRAC 3 cut(s) 181, 1311, 1582
HindII GTYRAC 3 cut(s) 181, 1311, 1582
HindIII AAGCTT 2 cut(s) 800, 923
HinfI GANTC 5 cut(s) 187, 368, 467, 711, 1514
HpaI GTTAAC 1 cut(s) 1311
HpaII CCGG 3 cut(s) 135, 1255, 1286
HphI GGTGA 4 cut(s) 212, 272, 299, 1244
Hpy166II GTNNAC 4 cut(s) 181, 1311, 1582, 1636
Hpy188I TCNGA 6 cut(s) 18, 82, 192, 278, 355, 750
Hpy188III TCNNGA 6 cut(s) 268, 715, 1145, 1357, 1375, 1673
Hpy8I GTNNAC 4 cut(s) 181, 1311, 1582, 1636
Hpy99I CGWCG 2 cut(s) 31, 661
HpyAV CCTTC 6 cut(s) 13, 33, 116, 476, 818, 1038
HpyCH4III ACNGT 3 cut(s) 304, 838, 1498
HpyCH4IV ACGT 2 cut(s) 26, 1040
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 1019, 1531, 1627
HpyF3I CTNAG 4 cut(s) 15, 79, 1014, 1218
HpySE526I ACGT 2 cut(s) 26, 1040
Hsp92I GRCGYC 1 cut(s) 26
Hsp92II CATG 9 cut(s) 121, 174, 221, 330, 497, 668, 718, 980, 1378
HspAI GCGC 1 cut(s) 662
Ksp22I TGATCA 1 cut(s) 316
KspAI GTTAAC 1 cut(s) 1311
Kzo9I GATC 3 cut(s) 241, 316, 1337
LmnI GCTCC 1 cut(s) 692
Lsp1109I GCAGC 3 cut(s) 406, 1138, 1216
LweI GCATC 3 cut(s) 431, 476, 596
MaeI CTAG 3 cut(s) 159, 372, 999
MaeII ACGT 2 cut(s) 26, 1040
MaeIII GTNAC 3 cut(s) 200, 260, 908
MalI GATC 3 cut(s) 243, 318, 1339
MbiI CCGCTC 1 cut(s) 1331
MboI GATC 3 cut(s) 241, 316, 1337
MboII GAAGA 6 cut(s) 20, 524, 1283, 1334, 1390, 1460
MhlI GDGCHC 2 cut(s) 80, 1638
MlsI TGGCCA 2 cut(s) 226, 363
MluCI AATT 9 cut(s) 376, 534, 764, 814, 841, 965, 1032, 1474, 1501
MluNI TGGCCA 2 cut(s) 226, 363
MlyI GAGTC 2 cut(s) 362, 1508
MmeI TCCRAC 2 cut(s) 812, 1472
Mox20I TGGCCA 2 cut(s) 226, 363
Mph1103I ATGCAT 1 cut(s) 589
MroXI GAANNNNTTC 2 cut(s) 722, 1382
MscI TGGCCA 2 cut(s) 226, 363
MseI TTAA 5 cut(s) 537, 623, 1007, 1035, 1310
MslI CAYNNNNRTG 2 cut(s) 498, 1674
Msp20I TGGCCA 2 cut(s) 226, 363
MspI CCGG 3 cut(s) 135, 1255, 1286
MspR9I CCNGG 4 cut(s) 136, 555, 1286, 1287
Mva1269I GAATGC 1 cut(s) 37
MvaI CCWGG 1 cut(s) 555
MvnI CGCG 1 cut(s) 1569
MwoI GCNNNNNNNGC 4 cut(s) 11, 1019, 1531, 1627
NciI CCSGG 3 cut(s) 136, 1286, 1287
NdeII GATC 3 cut(s) 241, 316, 1337
NlaIII CATG 9 cut(s) 121, 174, 221, 330, 497, 668, 718, 980, 1378
NmuCI GTSAC 2 cut(s) 200, 260
NsiI ATGCAT 1 cut(s) 589
NspI RCATGY 1 cut(s) 330
NspV TTCGAA 1 cut(s) 1471
PagI TCATGA 2 cut(s) 714, 1374
PceI AGGCCT 1 cut(s) 43
PcsI WCGNNNNNNNCGW 1 cut(s) 32
PctI GAATGC 1 cut(s) 37
PdmI GAANNNNTTC 2 cut(s) 722, 1382
PfeI GAWTC 3 cut(s) 187, 467, 711
PkrI GCNGC 5 cut(s) 343, 421, 1153, 1231, 1333
Ple19I CGATCG 1 cut(s) 1340
PleI GAGTC 2 cut(s) 362, 1508
PpsI GAGTC 2 cut(s) 362, 1508
Psp124BI GAGCTC 1 cut(s) 80
Psp1406I AACGTT 1 cut(s) 1040
Psp6I CCWGG 1 cut(s) 553
PspGI CCWGG 1 cut(s) 553
PspPI GGNCC 2 cut(s) 155, 834
PvuI CGATCG 1 cut(s) 1340
RsaI GTAC 3 cut(s) 856, 1421, 1566
RsaNI GTAC 3 cut(s) 855, 1420, 1565
RseI CAYNNNNRTG 2 cut(s) 498, 1674
SacI GAGCTC 1 cut(s) 80
SaqAI TTAA 5 cut(s) 537, 623, 1007, 1035, 1310
SatI GCNGC 5 cut(s) 342, 420, 1152, 1230, 1332
Sau3AI GATC 3 cut(s) 241, 316, 1337
Sau96I GGNCC 2 cut(s) 155, 834
SchI GAGTC 2 cut(s) 362, 1508
ScrFI CCNGG 4 cut(s) 136, 555, 1286, 1287
SduI GDGCHC 2 cut(s) 80, 1638
SfaNI GCATC 3 cut(s) 431, 476, 596
SfuI TTCGAA 1 cut(s) 1471
SinI GGWCC 2 cut(s) 155, 834
SmaI CCCGGG 1 cut(s) 1287
SmiMI CAYNNNNRTG 2 cut(s) 498, 1674
Sse9I AATT 9 cut(s) 376, 534, 764, 814, 841, 965, 1032, 1474, 1501
SseBI AGGCCT 1 cut(s) 43
SsiI CCGC 7 cut(s) 162, 342, 489, 606, 1331, 1395, 1569
SspMI CTAG 3 cut(s) 159, 372, 999
SstI GAGCTC 1 cut(s) 80
StuI AGGCCT 1 cut(s) 43
StyD4I CCNGG 4 cut(s) 134, 553, 1284, 1285
StyI CCWWGG 1 cut(s) 528
TaaI ACNGT 3 cut(s) 304, 838, 1498
TaiI ACGT 2 cut(s) 29, 1043
TaqI TCGA 4 cut(s) 29, 1336, 1471, 1517
TasI AATT 9 cut(s) 376, 534, 764, 814, 841, 965, 1032, 1474, 1501
TauI GCSGC 2 cut(s) 344, 1334
TfiI GAWTC 3 cut(s) 187, 467, 711
Tru1I TTAA 5 cut(s) 537, 623, 1007, 1035, 1310
Tru9I TTAA 5 cut(s) 537, 623, 1007, 1035, 1310
TscAI CASTG 4 cut(s) 307, 481, 739, 1704
TseFI GTSAC 2 cut(s) 200, 260
TseI GCWGC 3 cut(s) 419, 1151, 1229
Tsp45I GTSAC 2 cut(s) 200, 260
TspGWI ACGGA 2 cut(s) 896, 959
TspMI CCCGGG 1 cut(s) 1285
TspRI CASTG 4 cut(s) 307, 481, 739, 1704
VneI GTGCAC 1 cut(s) 1634
VpaK11BI GGWCC 2 cut(s) 155, 834
XapI RAATTY 4 cut(s) 764, 965, 1474, 1501
XceI RCATGY 1 cut(s) 330
XcmI CCANNNNNNNNNTGG 2 cut(s) 983, 1240
XmaI CCCGGG 1 cut(s) 1285
XmnI GAANNNNTTC 2 cut(s) 722, 1382
XspI CTAG 3 cut(s) 159, 372, 999
ZraI GACGTC 1 cut(s) 27
Zsp2I ATGCAT 1 cut(s) 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.