Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0015218

Physical Location & Seq

Genomic Coordinates Reverse (-)

28984849 .. 28986914

Gene Structure 2066 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g40760.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGAGCTCCACACCCAAACAGCCTTTGTTTTGCCTAAAATGGCCGTGGGACATGAACCGGAATCCTCAGACTAATACTTCTGGTGGTTGTACTTTTGAAGGCCCTTGGCTATTCAAATCTATGCAAAGTCTTGGCTCCGTCGCATTCAATTTCGTTCAGTCAGTTTCCAAGCCACCGTCTTCTTTAGTCAATCACTTTAAGCCCTTGCAGTGGGATGCAAGAACCGACCAAAATGAGACTCTCAAGTCAAAAACAGTATTGGGTCCTGAGGAGCAGGGGGAGGCAGAGCAAAGAGCATTTGCCTCTGCATTGGCAAGTGAGAAAGAGGCTACAATGCTTGAGTTTTACTCACCCAAATGCAGGCTGTGCAATTCCTTGCTTAATTCTGTAATGGAGGTTGAGCATAGGAACTCAGACTGGCTTAACATTGTTATGGCAGATGCAGAGAATGACAAATGGCTTCCTGAGCTCCTTCATTATGACATTAGATATGTGCCTTGCTTTGTATTACTGGACAAGAAGGGGAGGGCACTGGCAAAGACCGGTATTCCAAATAGTCGACTACATGTATTAGCAGGTCTCTCTCATCTTCTGAAGATGAAGCGTCCTAGCAAAAGAACAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0044424 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

209

Amino Acids

23.57

Weight (kDa)

8.97

Isoelectric Point (pI)

45.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	96 - 177	3.5e-08	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06430
fragaria_vesca	FvH4_2g40760 FvH4_2g40760
malus_domestica	MD15G1036100.v1.1
prunus_persica	Prupe.1G390300_v2.0.a1 Prupe.1G390300_v2.0.a1
pyrus_communis	pycom15g03360
rosa_chinensis	RchiOBHm_Chr6g0299831
rosa_laevigata	RLG00000011385
rosa_roxburghii	Rroxscaffold_7G00168340
rosa_rugosa	Rorug06G0292600
rosa_samantha	Rh6AG403700 Rh6BG412000 Rh6CG418100 Rh6DG404900
rosa_wichuraiana	Rw6G035320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	244
Acc36I	ACCTGC	1 cut(s)	566
AccI	GTMKAC	1 cut(s)	559
AcoI	YGGCCR	1 cut(s)	41
AcuI	CTGAAG	1 cut(s)	614
AfaI	GTAC	1 cut(s)	91
AfiI	CCNNNNNNNGG	2 cut(s)	210, 360
AflIII	ACRYGT	1 cut(s)	565
AgeI	ACCGGT	1 cut(s)	542
AgsI	TTSAA	3 cut(s)	98, 115, 148
AluBI	AGCT	3 cut(s)	6, 469, 624
AluI	AGCT	3 cut(s)	6, 469, 624
Alw21I	GWGCWC	2 cut(s)	8, 471
Alw26I	GTCTC	2 cut(s)	230, 584
AoxI	GGCC	2 cut(s)	41, 100
AsiGI	ACCGGT	1 cut(s)	542
AspS9I	GGNCC	2 cut(s)	101, 263
AsuHPI	GGTGA	1 cut(s)	342
AvaII	GGWCC	1 cut(s)	263
AxyI	CCTNAGG	1 cut(s)	267
BaeGI	GKGCMC	1 cut(s)	532
BanII	GRGCYC	2 cut(s)	8, 471
BbsI	GAAGAC	1 cut(s)	171
Bbv12I	GWGCWC	2 cut(s)	8, 471
BceAI	ACGGC	1 cut(s)	28
BcoDI	GTCTC	2 cut(s)	230, 584
BfaI	CTAG	1 cut(s)	609
BfuAI	ACCTGC	1 cut(s)	566
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	2 cut(s)	101, 263
BmiI	GGNNCC	2 cut(s)	136, 264
BmsI	GCATC	2 cut(s)	205, 430
BpiI	GAAGAC	1 cut(s)	171
BplI	GAGNNNNNCTC	2 cut(s)	332, 364
Bpu10I	CCTNAGC	1 cut(s)	465
BpuEI	CTTGAG	2 cut(s)	227, 359
BsaI	GGTCTC	1 cut(s)	584
BsaJI	CCNNGG	2 cut(s)	44, 104
BsaWI	WCCGGW	2 cut(s)	57, 542
Bsc4I	CCNNNNNNNGG	2 cut(s)	210, 360
Bse118I	RCCGGY	1 cut(s)	542
Bse1I	ACTGG	3 cut(s)	422, 516, 537
Bse21I	CCTNAGG	1 cut(s)	267
BseDI	CCNNGG	2 cut(s)	44, 104
BseGI	GGATG	1 cut(s)	220
BseLI	CCNNNNNNNGG	2 cut(s)	210, 360
BseMII	CTCAG	4 cut(s)	80, 258, 426, 456
BseNI	ACTGG	3 cut(s)	422, 516, 537
BseRI	GAGGAG	1 cut(s)	284
BseSI	GKGCMC	1 cut(s)	532
BshFI	GGCC	2 cut(s)	43, 102
BshTI	ACCGGT	1 cut(s)	542
BsiHKAI	GWGCWC	2 cut(s)	8, 471
BsiSI	CCGG	2 cut(s)	58, 543
BslFI	GGGAC	1 cut(s)	62
BslI	CCNNNNNNNGG	2 cut(s)	210, 360
BsmAI	GTCTC	2 cut(s)	230, 584
BsmFI	GGGAC	1 cut(s)	62
BsmI	GAATGC	1 cut(s)	143
BsnI	GGCC	2 cut(s)	43, 102
Bso31I	GGTCTC	1 cut(s)	584
Bsp1286I	GDGCHC	3 cut(s)	8, 471, 532
BspANI	GGCC	2 cut(s)	43, 102
BspCNI	CTCAG	4 cut(s)	79, 259, 425, 457
BspLI	GGNNCC	2 cut(s)	136, 264
BspMI	ACCTGC	1 cut(s)	566
BspTNI	GGTCTC	1 cut(s)	584
BsrFI	RCCGGY	1 cut(s)	542
BsrI	ACTGG	3 cut(s)	422, 516, 537
BssAI	RCCGGY	1 cut(s)	542
BssECI	CCNNGG	2 cut(s)	44, 104
BssT1I	CCWWGG	1 cut(s)	104
Bst4CI	ACNGT	2 cut(s)	177, 256
BstAPI	GCANNNNNTGC	1 cut(s)	366
BstC8I	GCNNGC	1 cut(s)	362
BstDEI	CTNAG	4 cut(s)	66, 267, 412, 465
BstDSI	CCRYGG	1 cut(s)	44
BstF5I	GGATG	1 cut(s)	220
BstMAI	GTCTC	2 cut(s)	230, 584
BstMWI	GCNNNNNNNGC	2 cut(s)	366, 466
BstNSI	RCATGY	1 cut(s)	569
BstSLI	GKGCMC	1 cut(s)	532
BstV2I	GAAGAC	1 cut(s)	171
Bsu36I	CCTNAGG	1 cut(s)	267
BsuRI	GGCC	2 cut(s)	43, 102
BtgI	CCRYGG	1 cut(s)	44
BtsCI	GGATG	1 cut(s)	220
BtsI	GCAGTG	1 cut(s)	215
BtsIMutI	CAGTG	2 cut(s)	215, 530
BveI	ACCTGC	1 cut(s)	566
Cac8I	GCNNGC	1 cut(s)	362
Cfr10I	RCCGGY	1 cut(s)	542
Cfr13I	GGNCC	2 cut(s)	101, 263
CseI	GACGC	1 cut(s)	593
Csp6I	GTAC	1 cut(s)	90
CspAI	ACCGGT	1 cut(s)	542
CviAII	CATG	2 cut(s)	52, 566
CviQI	GTAC	1 cut(s)	90
DdeI	CTNAG	4 cut(s)	66, 267, 412, 465
DrdI	GACNNNNNNGTC	1 cut(s)	244
DseDI	GACNNNNNNGTC	1 cut(s)	244
EaeI	YGGCCR	1 cut(s)	41
Ecl136II	GAGCTC	2 cut(s)	6, 469
Eco130I	CCWWGG	1 cut(s)	104
Eco24I	GRGCYC	2 cut(s)	8, 471
Eco31I	GGTCTC	1 cut(s)	584
Eco47I	GGWCC	1 cut(s)	263
Eco53kI	GAGCTC	2 cut(s)	6, 469
Eco57I	CTGAAG	1 cut(s)	614
Eco81I	CCTNAGG	1 cut(s)	267
EcoICRI	GAGCTC	2 cut(s)	6, 469
EcoO109I	RGGNCCY	2 cut(s)	101, 263
EcoT14I	CCWWGG	1 cut(s)	104
EcoT38I	GRGCYC	2 cut(s)	8, 471
ErhI	CCWWGG	1 cut(s)	104
FaeI	CATG	2 cut(s)	55, 569
FaiI	YATR	7 cut(s)	53, 122, 405, 434, 480, 492, 567
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	2 cut(s)	51, 565
FblI	GTMKAC	1 cut(s)	559
FokI	GGATG	1 cut(s)	227
FriOI	GRGCYC	2 cut(s)	8, 471
FspBI	CTAG	1 cut(s)	609
HaeIII	GGCC	2 cut(s)	43, 102
HapII	CCGG	2 cut(s)	58, 543
HgaI	GACGC	1 cut(s)	593
Hin1II	CATG	2 cut(s)	55, 569
HincII	GTYRAC	1 cut(s)	560
HindII	GTYRAC	1 cut(s)	560
HinfI	GANTC	2 cut(s)	61, 238
HpaII	CCGG	2 cut(s)	58, 543
HphI	GGTGA	1 cut(s)	342
Hpy166II	GTNNAC	1 cut(s)	560
Hpy188I	TCNGA	3 cut(s)	69, 415, 594
Hpy188III	TCNNGA	2 cut(s)	266, 464
Hpy8I	GTNNAC	1 cut(s)	560
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	3 cut(s)	92, 482, 514
HpyCH4III	ACNGT	2 cut(s)	177, 256
HpyCH4V	TGCA	7 cut(s)	124, 208, 218, 308, 360, 369, 443
HpyF10VI	GCNNNNNNNGC	2 cut(s)	366, 466
HpyF3I	CTNAG	4 cut(s)	66, 267, 412, 465
Hsp92II	CATG	2 cut(s)	55, 569
LmnI	GCTCC	4 cut(s)	11, 140, 271, 474
LweI	GCATC	2 cut(s)	205, 430
MaeI	CTAG	1 cut(s)	609
MboII	GAAGA	3 cut(s)	171, 581, 607
MhlI	GDGCHC	3 cut(s)	8, 471, 532
MluCI	AATT	3 cut(s)	148, 370, 382
MlyI	GAGTC	1 cut(s)	232
MnlI	CCTC	7 cut(s)	75, 262, 274, 313, 319, 388, 519
MseI	TTAA	3 cut(s)	198, 381, 423
MslI	CAYNNNNRTG	2 cut(s)	355, 431
MspI	CCGG	2 cut(s)	58, 543
Mva1269I	GAATGC	1 cut(s)	143
MwoI	GCNNNNNNNGC	2 cut(s)	366, 466
NlaIII	CATG	2 cut(s)	55, 569
NlaIV	GGNNCC	2 cut(s)	136, 264
NspI	RCATGY	1 cut(s)	569
PciI	ACATGT	1 cut(s)	565
PctI	GAATGC	1 cut(s)	143
PfeI	GAWTC	1 cut(s)	61
PinAI	ACCGGT	1 cut(s)	542
PleI	GAGTC	1 cut(s)	232
PpsI	GAGTC	1 cut(s)	232
PpuMI	RGGWCCY	1 cut(s)	263
PscI	ACATGT	1 cut(s)	565
Psp124BI	GAGCTC	2 cut(s)	8, 471
Psp5II	RGGWCCY	1 cut(s)	263
PspN4I	GGNNCC	2 cut(s)	136, 264
PspPI	GGNCC	2 cut(s)	101, 263
PspPPI	RGGWCCY	1 cut(s)	263
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
RseI	CAYNNNNRTG	2 cut(s)	355, 431
SacI	GAGCTC	2 cut(s)	8, 471
SalI	GTCGAC	1 cut(s)	558
SaqAI	TTAA	3 cut(s)	198, 381, 423
Sau96I	GGNCC	2 cut(s)	101, 263
SchI	GAGTC	1 cut(s)	232
SduI	GDGCHC	3 cut(s)	8, 471, 532
SetI	ASST	5 cut(s)	8, 399, 471, 580, 626
SfaNI	GCATC	2 cut(s)	205, 430
SinI	GGWCC	1 cut(s)	263
SmiMI	CAYNNNNRTG	2 cut(s)	355, 431
SmlI	CTYRAG	2 cut(s)	242, 338
SmoI	CTYRAG	2 cut(s)	242, 338
Sse9I	AATT	3 cut(s)	148, 370, 382
SspMI	CTAG	1 cut(s)	609
SstI	GAGCTC	2 cut(s)	8, 471
StyI	CCWWGG	1 cut(s)	104
TaaI	ACNGT	2 cut(s)	177, 256
TaqI	TCGA	1 cut(s)	559
TasI	AATT	3 cut(s)	148, 370, 382
TatI	WGTACW	1 cut(s)	89
TfiI	GAWTC	1 cut(s)	61
Tru1I	TTAA	3 cut(s)	198, 381, 423
Tru9I	TTAA	3 cut(s)	198, 381, 423
TscAI	CASTG	2 cut(s)	215, 537
TspDTI	ATGAA	3 cut(s)	68, 464, 614
TspGWI	ACGGA	1 cut(s)	127
TspRI	CASTG	2 cut(s)	215, 537
VpaK11BI	GGWCC	1 cut(s)	263
XceI	RCATGY	1 cut(s)	569
XmiI	GTMKAC	1 cut(s)	559
XspI	CTAG	1 cut(s)	609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.