Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0015218

Physical Location & Seq

Genomic Coordinates Forward (+)

59875018 .. 59876297

Gene Structure 1280 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G035320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGAGCTCTGTCCCCAAACAGCCTTTGTTCTGCCTAAAATGGCCATGGGACATGAACCAGACTCCTCAGACTAATTCTCCTAGTGTTGCTCCTTTGAGGGCCCTTGGCTTTTCAAATCTATGCAAAATCTTGGTTTCCAAGTCACCGTCTTCGTTAGTCAATCATTTTAAGCCCTTGCAGTTTGATGCAAGAACCAACCAAAGTAAGAGTCTGAGTCCTGAAGAGCAGGCGGAGGCAGAGCATAGAGCATTCGCCTCCGCTTTGGCAAGCAATAAAGAGGCTACAATGCTTGAGTTTTACTCACCCAAATGCAGGCTGTGCAGTTCTTTACTTAATTCTGTAGTGGAGGTTGAGCGTAGGAACTCAGACTGGCTTAACATTGTTATGGCAGATGCAGAGAATGACAAATGGCTACCCGAGCTCCTTCATTACGACATTAGATATGTACCTTGCTTTGTATTACTGGACAAGAAGGGGAGGGCACTGGCAAAGACTGGTATTCCAAATAGTCGACTACATGTATTAGCAGGTCTCTCTCATCTTCTGAAGATGAAGTGTCCTAGCAAAAGAACAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0044424 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

192

Amino Acids

21.6

Weight (kDa)

9.3

Isoelectric Point (pI)

56.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	79 - 161	1e-07	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06430
fragaria_vesca	FvH4_2g40760 FvH4_2g40760
malus_domestica	MD15G1036100.v1.1
prunus_persica	Prupe.1G390300_v2.0.a1 Prupe.1G390300_v2.0.a1
pyrus_communis	pycom15g03360
rosa_chinensis	RchiOBHm_Chr6g0299831
rosa_laevigata	RLG00000011385
rosa_roxburghii	Rroxscaffold_7G00168340
rosa_rugosa	Rorug06G0292600
rosa_samantha	Rh6AG403700 Rh6BG412000 Rh6CG418100 Rh6DG404900
rosa_wichuraiana	Rw6G035320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	518
AccI	GTMKAC	1 cut(s)	511
AciI	CCGC	2 cut(s)	230, 258
AcoI	YGGCCR	1 cut(s)	41
AcuI	CTGAAG	2 cut(s)	240, 566
AfaI	GTAC	1 cut(s)	447
AfiI	CCNNNNNNNGG	1 cut(s)	312
AflIII	ACRYGT	1 cut(s)	517
AgsI	TTSAA	1 cut(s)	114
AluBI	AGCT	3 cut(s)	6, 421, 576
AluI	AGCT	3 cut(s)	6, 421, 576
Alw21I	GWGCWC	2 cut(s)	8, 423
Alw26I	GTCTC	1 cut(s)	536
Ama87I	CYCGRG	1 cut(s)	416
AoxI	GGCC	2 cut(s)	41, 99
ApaI	GGGCCC	1 cut(s)	103
ArsI	GACNNNNNNTTYG	2 cut(s)	193, 225
AspS9I	GGNCC	2 cut(s)	99, 100
AsuHPI	GGTGA	2 cut(s)	135, 294
AvaI	CYCGRG	1 cut(s)	416
BaeGI	GKGCMC	2 cut(s)	103, 484
BalI	TGGCCA	1 cut(s)	43
BanII	GRGCYC	3 cut(s)	8, 103, 423
BbsI	GAAGAC	1 cut(s)	141
Bbv12I	GWGCWC	2 cut(s)	8, 423
BcoDI	GTCTC	1 cut(s)	536
BfaI	CTAG	2 cut(s)	81, 561
BfmI	CTRYAG	1 cut(s)	339
BfuAI	ACCTGC	1 cut(s)	518
BmeT110I	CYCGRG	1 cut(s)	416
BmgT120I	GGNCC	2 cut(s)	99, 100
BmiI	GGNNCC	1 cut(s)	101
BmsI	GCATC	2 cut(s)	175, 382
BpiI	GAAGAC	1 cut(s)	141
BplI	GAGNNNNNCTC	2 cut(s)	284, 316
BpuEI	CTTGAG	1 cut(s)	311
BsaI	GGTCTC	1 cut(s)	536
BsaJI	CCNNGG	2 cut(s)	44, 103
BsaXI	ACNNNNNCTCC	4 cut(s)	61, 91, 405, 435
Bsc4I	CCNNNNNNNGG	1 cut(s)	312
Bse1I	ACTGG	4 cut(s)	374, 468, 489, 499
BseDI	CCNNGG	2 cut(s)	44, 103
BseLI	CCNNNNNNNGG	1 cut(s)	312
BseMII	CTCAG	3 cut(s)	80, 203, 378
BseNI	ACTGG	4 cut(s)	374, 468, 489, 499
BseRI	GAGGAG	1 cut(s)	54
BseSI	GKGCMC	2 cut(s)	103, 484
BsgI	GTGCAG	1 cut(s)	340
BshFI	GGCC	2 cut(s)	43, 101
BsiHKAI	GWGCWC	2 cut(s)	8, 423
BsiHKCI	CYCGRG	1 cut(s)	416
BslFI	GGGAC	1 cut(s)	62
BslI	CCNNNNNNNGG	1 cut(s)	312
BsmAI	GTCTC	1 cut(s)	536
BsmFI	GGGAC	1 cut(s)	62
BsmI	GAATGC	1 cut(s)	248
BsnI	GGCC	2 cut(s)	43, 101
Bso31I	GGTCTC	1 cut(s)	536
BsoBI	CYCGRG	1 cut(s)	416
Bsp120I	GGGCCC	1 cut(s)	99
Bsp1286I	GDGCHC	4 cut(s)	8, 103, 423, 484
Bsp19I	CCATGG	1 cut(s)	44
BspACI	CCGC	2 cut(s)	230, 258
BspANI	GGCC	2 cut(s)	43, 101
BspCNI	CTCAG	3 cut(s)	79, 204, 377
BspLI	GGNNCC	1 cut(s)	101
BspMI	ACCTGC	1 cut(s)	518
BspQI	GCTCTTC	1 cut(s)	216
BspTNI	GGTCTC	1 cut(s)	536
BsrI	ACTGG	4 cut(s)	374, 468, 489, 499
BssECI	CCNNGG	2 cut(s)	44, 103
BssT1I	CCWWGG	2 cut(s)	44, 103
Bst4CI	ACNGT	1 cut(s)	147
Bst6I	CTCTTC	1 cut(s)	216
BstAPI	GCANNNNNTGC	1 cut(s)	318
BstC8I	GCNNGC	3 cut(s)	228, 268, 314
BstDEI	CTNAG	3 cut(s)	66, 212, 364
BstDSI	CCRYGG	1 cut(s)	44
BstMAI	GTCTC	1 cut(s)	536
BstMWI	GCNNNNNNNGC	2 cut(s)	318, 418
BstNSI	RCATGY	1 cut(s)	521
BstSFI	CTRYAG	1 cut(s)	339
BstSLI	GKGCMC	2 cut(s)	103, 484
BstV2I	GAAGAC	1 cut(s)	141
BsuRI	GGCC	2 cut(s)	43, 101
BtgI	CCRYGG	1 cut(s)	44
BtsIMutI	CAGTG	1 cut(s)	482
BveI	ACCTGC	1 cut(s)	518
Cac8I	GCNNGC	3 cut(s)	228, 268, 314
Cfr13I	GGNCC	2 cut(s)	99, 100
Csp6I	GTAC	1 cut(s)	446
CviAII	CATG	3 cut(s)	45, 52, 518
CviQI	GTAC	1 cut(s)	446
DdeI	CTNAG	3 cut(s)	66, 212, 364
EaeI	YGGCCR	1 cut(s)	41
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
EciI	GGCGGA	1 cut(s)	245
Ecl136II	GAGCTC	2 cut(s)	6, 421
Eco130I	CCWWGG	2 cut(s)	44, 103
Eco24I	GRGCYC	3 cut(s)	8, 103, 423
Eco31I	GGTCTC	1 cut(s)	536
Eco53kI	GAGCTC	2 cut(s)	6, 421
Eco57I	CTGAAG	2 cut(s)	240, 566
Eco88I	CYCGRG	1 cut(s)	416
EcoICRI	GAGCTC	2 cut(s)	6, 421
EcoO109I	RGGNCCY	2 cut(s)	99, 100
EcoT14I	CCWWGG	2 cut(s)	44, 103
EcoT38I	GRGCYC	3 cut(s)	8, 103, 423
ErhI	CCWWGG	2 cut(s)	44, 103
FaeI	CATG	3 cut(s)	48, 55, 521
FaiI	YATR	7 cut(s)	46, 53, 121, 243, 386, 444, 519
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	3 cut(s)	44, 51, 517
FblI	GTMKAC	1 cut(s)	511
FriOI	GRGCYC	3 cut(s)	8, 103, 423
FspBI	CTAG	2 cut(s)	81, 561
HaeIII	GGCC	2 cut(s)	43, 101
Hin1II	CATG	3 cut(s)	48, 55, 521
HincII	GTYRAC	1 cut(s)	512
HindII	GTYRAC	1 cut(s)	512
HinfI	GANTC	3 cut(s)	61, 208, 214
HphI	GGTGA	2 cut(s)	135, 294
Hpy166II	GTNNAC	1 cut(s)	512
Hpy188I	TCNGA	4 cut(s)	69, 213, 367, 546
Hpy188III	TCNNGA	1 cut(s)	218
Hpy8I	GTNNAC	1 cut(s)	512
HpyAV	CCTTC	2 cut(s)	434, 466
HpyCH4III	ACNGT	1 cut(s)	147
HpyCH4V	TGCA	6 cut(s)	123, 178, 188, 312, 321, 395
HpyF10VI	GCNNNNNNNGC	2 cut(s)	318, 418
HpyF3I	CTNAG	3 cut(s)	66, 212, 364
Hsp92II	CATG	3 cut(s)	48, 55, 521
LguI	GCTCTTC	1 cut(s)	216
LmnI	GCTCC	2 cut(s)	94, 426
LpnPI	CCDG	9 cut(s)	71, 212, 231, 298, 355, 449, 470, 480, 513
LweI	GCATC	2 cut(s)	175, 382
MaeI	CTAG	2 cut(s)	81, 561
MaeIII	GTNAC	1 cut(s)	141
MboII	GAAGA	4 cut(s)	141, 233, 533, 559
MhlI	GDGCHC	4 cut(s)	8, 103, 423, 484
MlsI	TGGCCA	1 cut(s)	43
MluCI	AATT	2 cut(s)	73, 334
MluNI	TGGCCA	1 cut(s)	43
MlyI	GAGTC	3 cut(s)	55, 217, 223
MnlI	CCTC	7 cut(s)	75, 90, 226, 265, 271, 340, 471
Mox20I	TGGCCA	1 cut(s)	43
MscI	TGGCCA	1 cut(s)	43
MseI	TTAA	3 cut(s)	168, 333, 375
MslI	CAYNNNNRTG	2 cut(s)	307, 383
Msp20I	TGGCCA	1 cut(s)	43
Mva1269I	GAATGC	1 cut(s)	248
MwoI	GCNNNNNNNGC	2 cut(s)	318, 418
NcoI	CCATGG	1 cut(s)	44
NlaIII	CATG	3 cut(s)	48, 55, 521
NlaIV	GGNNCC	1 cut(s)	101
NmuCI	GTSAC	1 cut(s)	141
NspI	RCATGY	1 cut(s)	521
PciI	ACATGT	1 cut(s)	517
PciSI	GCTCTTC	1 cut(s)	216
PctI	GAATGC	1 cut(s)	248
PleI	GAGTC	3 cut(s)	55, 216, 222
PpsI	GAGTC	3 cut(s)	55, 216, 222
PscI	ACATGT	1 cut(s)	517
Psp124BI	GAGCTC	2 cut(s)	8, 423
PspN4I	GGNNCC	1 cut(s)	101
PspOMI	GGGCCC	1 cut(s)	99
PspPI	GGNCC	2 cut(s)	99, 100
RsaI	GTAC	1 cut(s)	447
RsaNI	GTAC	1 cut(s)	446
RseI	CAYNNNNRTG	2 cut(s)	307, 383
SacI	GAGCTC	2 cut(s)	8, 423
SalI	GTCGAC	1 cut(s)	510
SapI	GCTCTTC	1 cut(s)	216
SaqAI	TTAA	3 cut(s)	168, 333, 375
Sau96I	GGNCC	2 cut(s)	99, 100
SchI	GAGTC	3 cut(s)	55, 217, 223
SduI	GDGCHC	4 cut(s)	8, 103, 423, 484
SetI	ASST	6 cut(s)	8, 351, 423, 451, 532, 578
SfaNI	GCATC	2 cut(s)	175, 382
SfcI	CTRYAG	1 cut(s)	339
SmiMI	CAYNNNNRTG	2 cut(s)	307, 383
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	2 cut(s)	73, 334
SsiI	CCGC	2 cut(s)	230, 258
SspMI	CTAG	2 cut(s)	81, 561
SstI	GAGCTC	2 cut(s)	8, 423
StyI	CCWWGG	2 cut(s)	44, 103
TaaI	ACNGT	1 cut(s)	147
TaqI	TCGA	1 cut(s)	511
TasI	AATT	2 cut(s)	73, 334
Tru1I	TTAA	3 cut(s)	168, 333, 375
Tru9I	TTAA	3 cut(s)	168, 333, 375
TscAI	CASTG	1 cut(s)	489
TseFI	GTSAC	1 cut(s)	141
Tsp45I	GTSAC	1 cut(s)	141
TspDTI	ATGAA	3 cut(s)	68, 416, 566
TspRI	CASTG	1 cut(s)	489
XceI	RCATGY	1 cut(s)	521
XmiI	GTMKAC	1 cut(s)	511
XspI	CTAG	2 cut(s)	81, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.