Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0015218

Physical Location & Seq

Genomic Coordinates Reverse (-)

2526487 .. 2527905

Gene Structure 1419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1036100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGTTTATACTCCAAAAGAGCCTTTGTTTTGCCTAAAATGGCCATGGGACATGAACCCGAATCCAAAAAATAACACTCATAGCGTTTGCTCGTTTGAGGGTCCTTGGCTGTTCAAATCTGTGCAGACTATCGGGTCCCTTGCTTTCAATTTCGTCAGCTCAATTTCGTTGATCAACAACTTAAAGCCCTTCCAAATGGATGCAAGAACCGGCCAAGGTAAGACTTTGAAGTCGAAAACAGTCTTGAGTCCGGAAGAGCAGGGGGAGGCGGAGCATAGGGCGTTTGCCTCGGCATTGGCAAGTGCGAAAGAGGCTACAGTGGTTGAGTTTTATTCACCCAAATGCAGGCTGTGCAATTCTTTGCTTAATTTTGTTGTGGAGGTTGAGAGTAGGAACTCGGAGTGGCTTAACATTGTTATGGCAGATGCAGAGAACGAGAAATGGCTTCCCGAGCTCCTCCATTACGACATCAGATATGTGCCTTGCTTTGTTATACTGGACAAGAAGGGGAGGGCACTGGCGAAGACCGGGATTCCGAGCAGTCGACTGCACGTAATAGCAGGCCTCTCTCATCTTCTCAAGATGAAGCGTGCTCACAAAAGTAATAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0044424 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

204

Amino Acids

22.9

Weight (kDa)

9.08

Isoelectric Point (pI)

33.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	91 - 172	3.8e-08	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0015218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06430
fragaria_vesca	FvH4_2g40760 FvH4_2g40760
malus_domestica	MD15G1036100.v1.1
prunus_persica	Prupe.1G390300_v2.0.a1 Prupe.1G390300_v2.0.a1
pyrus_communis	pycom15g03360
rosa_chinensis	RchiOBHm_Chr6g0299831
rosa_laevigata	RLG00000011385
rosa_roxburghii	Rroxscaffold_7G00168340
rosa_rugosa	Rorug06G0292600
rosa_samantha	Rh6AG403700 Rh6BG412000 Rh6CG418100 Rh6DG404900
rosa_wichuraiana	Rw6G035320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	133, 229
AccI	GTMKAC	1 cut(s)	544
AccIII	TCCGGA	1 cut(s)	250
AciI	CCGC	1 cut(s)	269
AcoI	YGGCCR	2 cut(s)	41, 211
AfiI	CCNNNNNNNGG	1 cut(s)	345
AgsI	TTSAA	3 cut(s)	115, 148, 229
AluBI	AGCT	3 cut(s)	159, 454, 609
AluI	AGCT	3 cut(s)	159, 454, 609
Alw21I	GWGCWC	2 cut(s)	456, 595
Ama87I	CYCGRG	1 cut(s)	449
Aor13HI	TCCGGA	1 cut(s)	250
AoxI	GGCC	3 cut(s)	41, 211, 562
AspS9I	GGNCC	2 cut(s)	101, 135
AsuC2I	CCSGG	1 cut(s)	529
AsuHPI	GGTGA	1 cut(s)	327
AvaI	CYCGRG	1 cut(s)	449
AvaII	GGWCC	2 cut(s)	101, 135
BaeGI	GKGCMC	1 cut(s)	517
BalI	TGGCCA	1 cut(s)	43
BanII	GRGCYC	1 cut(s)	456
BbsI	GAAGAC	1 cut(s)	530
Bbv12I	GWGCWC	2 cut(s)	456, 595
BclI	TGATCA	1 cut(s)	171
BcnI	CCSGG	1 cut(s)	529
BfmI	CTRYAG	1 cut(s)	315
Bme1390I	CCNGG	1 cut(s)	529
Bme18I	GGWCC	2 cut(s)	101, 135
BmeT110I	CYCGRG	1 cut(s)	449
BmgT120I	GGNCC	2 cut(s)	101, 135
BmiI	GGNNCC	3 cut(s)	102, 136, 137
BmrFI	CCNGG	1 cut(s)	529
BmsI	GCATC	2 cut(s)	190, 415
BpiI	GAAGAC	1 cut(s)	530
BpuEI	CTTGAG	2 cut(s)	265, 563
BpuMI	CCSGG	1 cut(s)	529
BsaAI	YACGTR	1 cut(s)	553
BsaJI	CCNNGG	4 cut(s)	44, 104, 214, 288
BsaWI	WCCGGW	1 cut(s)	250
Bsc4I	CCNNNNNNNGG	1 cut(s)	345
Bse118I	RCCGGY	1 cut(s)	209
Bse1I	ACTGG	2 cut(s)	501, 522
BseAI	TCCGGA	1 cut(s)	250
BseDI	CCNNGG	4 cut(s)	44, 104, 214, 288
BseGI	GGATG	1 cut(s)	205
BseLI	CCNNNNNNNGG	1 cut(s)	345
BseNI	ACTGG	2 cut(s)	501, 522
BseRI	GAGGAG	1 cut(s)	446
BseSI	GKGCMC	1 cut(s)	517
BsgI	GTGCAG	2 cut(s)	143, 533
BshFI	GGCC	3 cut(s)	43, 213, 564
BsiHKAI	GWGCWC	2 cut(s)	456, 595
BsiHKCI	CYCGRG	1 cut(s)	449
BsiSI	CCGG	3 cut(s)	210, 251, 528
BslFI	GGGAC	2 cut(s)	62, 121
BslI	CCNNNNNNNGG	1 cut(s)	345
BsmFI	GGGAC	2 cut(s)	62, 121
BsnI	GGCC	3 cut(s)	43, 213, 564
BsoBI	CYCGRG	1 cut(s)	449
Bsp1286I	GDGCHC	3 cut(s)	456, 517, 595
Bsp13I	TCCGGA	1 cut(s)	250
Bsp143I	GATC	1 cut(s)	171
Bsp19I	CCATGG	1 cut(s)	44
BspACI	CCGC	1 cut(s)	269
BspANI	GGCC	3 cut(s)	43, 213, 564
BspEI	TCCGGA	1 cut(s)	250
BspLI	GGNNCC	3 cut(s)	102, 136, 137
BspQI	GCTCTTC	1 cut(s)	249
BsrFI	RCCGGY	1 cut(s)	209
BsrI	ACTGG	2 cut(s)	501, 522
BssAI	RCCGGY	1 cut(s)	209
BssECI	CCNNGG	4 cut(s)	44, 104, 214, 288
BssMI	GATC	1 cut(s)	171
BssT1I	CCWWGG	3 cut(s)	44, 104, 214
Bst4CI	ACNGT	2 cut(s)	241, 319
Bst6I	CTCTTC	1 cut(s)	249
BstAPI	GCANNNNNTGC	1 cut(s)	351
BstBAI	YACGTR	1 cut(s)	553
BstC8I	GCNNGC	3 cut(s)	347, 562, 591
BstDSI	CCRYGG	1 cut(s)	44
BstF5I	GGATG	1 cut(s)	205
BstKTI	GATC	1 cut(s)	174
BstMBI	GATC	1 cut(s)	171
BstMWI	GCNNNNNNNGC	3 cut(s)	311, 351, 451
BstSCI	CCNGG	1 cut(s)	527
BstSFI	CTRYAG	1 cut(s)	315
BstSLI	GKGCMC	1 cut(s)	517
BstV2I	GAAGAC	1 cut(s)	530
BsuRI	GGCC	3 cut(s)	43, 213, 564
BtgI	CCRYGG	1 cut(s)	44
BtsCI	GGATG	1 cut(s)	205
BtsIMutI	CAGTG	2 cut(s)	324, 515
Cac8I	GCNNGC	3 cut(s)	347, 562, 591
Cfr10I	RCCGGY	1 cut(s)	209
Cfr13I	GGNCC	2 cut(s)	101, 135
CviAII	CATG	2 cut(s)	45, 52
DpnI	GATC	1 cut(s)	173
DpnII	GATC	1 cut(s)	171
DrdI	GACNNNNNNGTC	2 cut(s)	133, 229
DseDI	GACNNNNNNGTC	2 cut(s)	133, 229
EaeI	YGGCCR	2 cut(s)	41, 211
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
EciI	GGCGGA	1 cut(s)	284
Ecl136II	GAGCTC	1 cut(s)	454
Eco130I	CCWWGG	3 cut(s)	44, 104, 214
Eco147I	AGGCCT	1 cut(s)	564
Eco24I	GRGCYC	1 cut(s)	456
Eco47I	GGWCC	2 cut(s)	101, 135
Eco53kI	GAGCTC	1 cut(s)	454
Eco88I	CYCGRG	1 cut(s)	449
EcoICRI	GAGCTC	1 cut(s)	454
EcoO109I	RGGNCCY	2 cut(s)	101, 135
EcoT14I	CCWWGG	3 cut(s)	44, 104, 214
EcoT38I	GRGCYC	1 cut(s)	456
ErhI	CCWWGG	3 cut(s)	44, 104, 214
FaeI	CATG	2 cut(s)	48, 55
FaiI	YATR	8 cut(s)	9, 46, 53, 81, 276, 419, 477, 494
FaqI	GGGAC	2 cut(s)	62, 121
FatI	CATG	2 cut(s)	44, 51
FbaI	TGATCA	1 cut(s)	171
FblI	GTMKAC	1 cut(s)	544
FokI	GGATG	1 cut(s)	212
FriOI	GRGCYC	1 cut(s)	456
HaeIII	GGCC	3 cut(s)	43, 213, 564
HapII	CCGG	3 cut(s)	210, 251, 528
Hin1II	CATG	2 cut(s)	48, 55
HincII	GTYRAC	1 cut(s)	545
HindII	GTYRAC	1 cut(s)	545
HinfI	GANTC	3 cut(s)	61, 247, 532
HpaII	CCGG	3 cut(s)	210, 251, 528
HphI	GGTGA	1 cut(s)	327
Hpy166II	GTNNAC	1 cut(s)	545
Hpy188I	TCNGA	3 cut(s)	400, 473, 537
Hpy188III	TCNNGA	4 cut(s)	244, 251, 449, 580
Hpy8I	GTNNAC	1 cut(s)	545
HpyAV	CCTTC	2 cut(s)	199, 499
HpyCH4III	ACNGT	2 cut(s)	241, 319
HpyCH4IV	ACGT	1 cut(s)	552
HpyCH4V	TGCA	6 cut(s)	124, 203, 345, 354, 428, 550
HpyF10VI	GCNNNNNNNGC	3 cut(s)	311, 351, 451
HpySE526I	ACGT	1 cut(s)	552
Hsp92II	CATG	2 cut(s)	48, 55
KflI	GGGWCCC	1 cut(s)	135
Kpn2I	TCCGGA	1 cut(s)	250
Ksp22I	TGATCA	1 cut(s)	171
Kzo9I	GATC	1 cut(s)	171
LguI	GCTCTTC	1 cut(s)	249
LmnI	GCTCC	2 cut(s)	271, 459
LpnPI	CCDG	8 cut(s)	223, 245, 264, 331, 482, 503, 541, 546
LweI	GCATC	2 cut(s)	190, 415
MaeII	ACGT	1 cut(s)	552
MalI	GATC	1 cut(s)	173
MboI	GATC	1 cut(s)	171
MboII	GAAGA	3 cut(s)	266, 535, 566
MhlI	GDGCHC	3 cut(s)	456, 517, 595
MlsI	TGGCCA	1 cut(s)	43
MluCI	AATT	4 cut(s)	148, 162, 355, 367
MluNI	TGGCCA	1 cut(s)	43
MlyI	GAGTC	1 cut(s)	256
MnlI	CCTC	8 cut(s)	91, 259, 298, 304, 373, 467, 504, 575
Mox20I	TGGCCA	1 cut(s)	43
MroI	TCCGGA	1 cut(s)	250
MscI	TGGCCA	1 cut(s)	43
MseI	TTAA	3 cut(s)	182, 366, 408
MslI	CAYNNNNRTG	2 cut(s)	340, 416
Msp20I	TGGCCA	1 cut(s)	43
MspI	CCGG	3 cut(s)	210, 251, 528
MspR9I	CCNGG	1 cut(s)	529
MwoI	GCNNNNNNNGC	3 cut(s)	311, 351, 451
NciI	CCSGG	1 cut(s)	529
NcoI	CCATGG	1 cut(s)	44
NdeII	GATC	1 cut(s)	171
NlaIII	CATG	2 cut(s)	48, 55
NlaIV	GGNNCC	3 cut(s)	102, 136, 137
NmeAIII	GCCGAG	1 cut(s)	269
PceI	AGGCCT	1 cut(s)	564
PciSI	GCTCTTC	1 cut(s)	249
PfeI	GAWTC	2 cut(s)	61, 532
PleI	GAGTC	1 cut(s)	255
PpsI	GAGTC	1 cut(s)	255
Ppu21I	YACGTR	1 cut(s)	553
PpuMI	RGGWCCY	2 cut(s)	101, 135
Psp124BI	GAGCTC	1 cut(s)	456
Psp5II	RGGWCCY	2 cut(s)	101, 135
PspN4I	GGNNCC	3 cut(s)	102, 136, 137
PspPI	GGNCC	2 cut(s)	101, 135
PspPPI	RGGWCCY	2 cut(s)	101, 135
RseI	CAYNNNNRTG	2 cut(s)	340, 416
SacI	GAGCTC	1 cut(s)	456
SalI	GTCGAC	1 cut(s)	543
SapI	GCTCTTC	1 cut(s)	249
SaqAI	TTAA	3 cut(s)	182, 366, 408
Sau3AI	GATC	1 cut(s)	171
Sau96I	GGNCC	2 cut(s)	101, 135
SchI	GAGTC	1 cut(s)	256
ScrFI	CCNGG	1 cut(s)	529
SduI	GDGCHC	3 cut(s)	456, 517, 595
SetI	ASST	6 cut(s)	161, 220, 384, 456, 555, 611
SfaNI	GCATC	2 cut(s)	190, 415
SfcI	CTRYAG	1 cut(s)	315
SinI	GGWCC	2 cut(s)	101, 135
SmiMI	CAYNNNNRTG	2 cut(s)	340, 416
SmlI	CTYRAG	2 cut(s)	244, 578
SmoI	CTYRAG	2 cut(s)	244, 578
Sse9I	AATT	4 cut(s)	148, 162, 355, 367
SseBI	AGGCCT	1 cut(s)	564
SsiI	CCGC	1 cut(s)	269
SstI	GAGCTC	1 cut(s)	456
StuI	AGGCCT	1 cut(s)	564
StyD4I	CCNGG	1 cut(s)	527
StyI	CCWWGG	3 cut(s)	44, 104, 214
TaaI	ACNGT	2 cut(s)	241, 319
TaiI	ACGT	1 cut(s)	555
TaqI	TCGA	2 cut(s)	233, 544
TasI	AATT	4 cut(s)	148, 162, 355, 367
TfiI	GAWTC	2 cut(s)	61, 532
Tru1I	TTAA	3 cut(s)	182, 366, 408
Tru9I	TTAA	3 cut(s)	182, 366, 408
TscAI	CASTG	2 cut(s)	324, 522
TspDTI	ATGAA	2 cut(s)	68, 599
TspRI	CASTG	2 cut(s)	324, 522
VpaK11BI	GGWCC	2 cut(s)	101, 135
XmiI	GTMKAC	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.