Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0015218

Physical Location & Seq

Genomic Coordinates Forward (+)

60060532 .. 60061813

Gene Structure 1282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG403700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGAGCTCTGTCCCCAAACAGCCTTTGTTCTGCCTAAAATGGCCATGGGACATGAACCAGACTCCTCAGACTAATTCTCCTAGTGTTTGCTCCTTTGAGGGCCCTTGGCTTTTCAAATCTATGCAAAATCTTGGGTCCGTTGCGTTCAATTTTGTCCAGTTAGTTTCCAAGTCACCGTCTTCGTTAGTCAATCATTTTAAGCCCTTGCAGTTTGATGCAAGAACCAACCAAAGTAAGAGTCTGAGTCCTGAAGAGCAGGCGGAGGCAGAGCATAGAGCATTCGCCTCCGCTTTGGCAAGCAATAAAGAGGCTACAATGCTTGAGTTTTACTCACCCAAATGCAGGCTGTGCAGTTCTTTACTTAATTCTGTAGTGGAGGTTGAGCGTAGGAACTCAGACTGGCTTAACATTGTTATGGCAGATGCAGAGAATGACAAATGGCTACCCGAGCTCCTTCATTACGACATTAGATATGTACCTTGCTTTGTATTACTGGACAAGAAGGGGAGGGCACTGGCAAAGACTGGTATTCCAAATAGTCGACTACATGTATTAGCAGGTCTCTCTCATCTTCTGAAGATGAAGTGTCCTAGCAAAAGAACAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0044424 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

202

Amino Acids

22.83

Weight (kDa)

9.05

Isoelectric Point (pI)

50.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	89 - 171	1.2e-07	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06430
fragaria_vesca	FvH4_2g40760 FvH4_2g40760
malus_domestica	MD15G1036100.v1.1
prunus_persica	Prupe.1G390300_v2.0.a1 Prupe.1G390300_v2.0.a1
pyrus_communis	pycom15g03360
rosa_chinensis	RchiOBHm_Chr6g0299831
rosa_laevigata	RLG00000011385
rosa_roxburghii	Rroxscaffold_7G00168340
rosa_rugosa	Rorug06G0292600
rosa_samantha	Rh6AG403700 Rh6BG412000 Rh6CG418100 Rh6DG404900
rosa_wichuraiana	Rw6G035320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	548
AccI	GTMKAC	1 cut(s)	541
AciI	CCGC	2 cut(s)	260, 288
AcoI	YGGCCR	1 cut(s)	41
AcuI	CTGAAG	2 cut(s)	270, 596
AfaI	GTAC	1 cut(s)	477
AfiI	CCNNNNNNNGG	1 cut(s)	342
AflIII	ACRYGT	1 cut(s)	547
AgsI	TTSAA	2 cut(s)	115, 148
AluBI	AGCT	3 cut(s)	6, 451, 606
AluI	AGCT	3 cut(s)	6, 451, 606
Alw21I	GWGCWC	2 cut(s)	8, 453
Alw26I	GTCTC	1 cut(s)	566
Ama87I	CYCGRG	1 cut(s)	446
AoxI	GGCC	2 cut(s)	41, 100
ApaI	GGGCCC	1 cut(s)	104
ArsI	GACNNNNNNTTYG	2 cut(s)	223, 255
AspS9I	GGNCC	3 cut(s)	100, 101, 135
AsuHPI	GGTGA	2 cut(s)	165, 324
AvaI	CYCGRG	1 cut(s)	446
AvaII	GGWCC	1 cut(s)	135
BaeGI	GKGCMC	2 cut(s)	104, 514
BalI	TGGCCA	1 cut(s)	43
BanII	GRGCYC	3 cut(s)	8, 104, 453
BbsI	GAAGAC	1 cut(s)	171
Bbv12I	GWGCWC	2 cut(s)	8, 453
BcoDI	GTCTC	1 cut(s)	566
BfaI	CTAG	2 cut(s)	81, 591
BfmI	CTRYAG	1 cut(s)	369
BfuAI	ACCTGC	1 cut(s)	548
Bme18I	GGWCC	1 cut(s)	135
BmeT110I	CYCGRG	1 cut(s)	446
BmgT120I	GGNCC	3 cut(s)	100, 101, 135
BmiI	GGNNCC	2 cut(s)	102, 136
BmsI	GCATC	2 cut(s)	205, 412
BpiI	GAAGAC	1 cut(s)	171
BplI	GAGNNNNNCTC	2 cut(s)	314, 346
BpuEI	CTTGAG	1 cut(s)	341
BsaI	GGTCTC	1 cut(s)	566
BsaJI	CCNNGG	2 cut(s)	44, 104
BsaXI	ACNNNNNCTCC	4 cut(s)	61, 91, 435, 465
Bsc4I	CCNNNNNNNGG	1 cut(s)	342
Bse1I	ACTGG	5 cut(s)	157, 404, 498, 519, 529
BseDI	CCNNGG	2 cut(s)	44, 104
BseLI	CCNNNNNNNGG	1 cut(s)	342
BseMII	CTCAG	3 cut(s)	80, 233, 408
BseNI	ACTGG	5 cut(s)	157, 404, 498, 519, 529
BseRI	GAGGAG	1 cut(s)	54
BseSI	GKGCMC	2 cut(s)	104, 514
BsgI	GTGCAG	1 cut(s)	370
BshFI	GGCC	2 cut(s)	43, 102
BsiHKAI	GWGCWC	2 cut(s)	8, 453
BsiHKCI	CYCGRG	1 cut(s)	446
BslFI	GGGAC	1 cut(s)	62
BslI	CCNNNNNNNGG	1 cut(s)	342
BsmAI	GTCTC	1 cut(s)	566
BsmFI	GGGAC	1 cut(s)	62
BsmI	GAATGC	1 cut(s)	278
BsnI	GGCC	2 cut(s)	43, 102
Bso31I	GGTCTC	1 cut(s)	566
BsoBI	CYCGRG	1 cut(s)	446
Bsp120I	GGGCCC	1 cut(s)	100
Bsp1286I	GDGCHC	4 cut(s)	8, 104, 453, 514
Bsp19I	CCATGG	1 cut(s)	44
BspACI	CCGC	2 cut(s)	260, 288
BspANI	GGCC	2 cut(s)	43, 102
BspCNI	CTCAG	3 cut(s)	79, 234, 407
BspLI	GGNNCC	2 cut(s)	102, 136
BspMI	ACCTGC	1 cut(s)	548
BspQI	GCTCTTC	1 cut(s)	246
BspTNI	GGTCTC	1 cut(s)	566
BsrI	ACTGG	5 cut(s)	157, 404, 498, 519, 529
BssECI	CCNNGG	2 cut(s)	44, 104
BssT1I	CCWWGG	2 cut(s)	44, 104
Bst4CI	ACNGT	1 cut(s)	177
Bst6I	CTCTTC	1 cut(s)	246
BstAPI	GCANNNNNTGC	1 cut(s)	348
BstC8I	GCNNGC	3 cut(s)	258, 298, 344
BstDEI	CTNAG	3 cut(s)	66, 242, 394
BstDSI	CCRYGG	1 cut(s)	44
BstMAI	GTCTC	1 cut(s)	566
BstMWI	GCNNNNNNNGC	2 cut(s)	348, 448
BstNSI	RCATGY	1 cut(s)	551
BstSFI	CTRYAG	1 cut(s)	369
BstSLI	GKGCMC	2 cut(s)	104, 514
BstV2I	GAAGAC	1 cut(s)	171
BsuRI	GGCC	2 cut(s)	43, 102
BtgI	CCRYGG	1 cut(s)	44
BtsIMutI	CAGTG	1 cut(s)	512
BveI	ACCTGC	1 cut(s)	548
Cac8I	GCNNGC	3 cut(s)	258, 298, 344
Cfr13I	GGNCC	3 cut(s)	100, 101, 135
Csp6I	GTAC	1 cut(s)	476
CviAII	CATG	3 cut(s)	45, 52, 548
CviQI	GTAC	1 cut(s)	476
DdeI	CTNAG	3 cut(s)	66, 242, 394
EaeI	YGGCCR	1 cut(s)	41
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
EciI	GGCGGA	1 cut(s)	275
Ecl136II	GAGCTC	2 cut(s)	6, 451
Eco130I	CCWWGG	2 cut(s)	44, 104
Eco24I	GRGCYC	3 cut(s)	8, 104, 453
Eco31I	GGTCTC	1 cut(s)	566
Eco47I	GGWCC	1 cut(s)	135
Eco53kI	GAGCTC	2 cut(s)	6, 451
Eco57I	CTGAAG	2 cut(s)	270, 596
Eco88I	CYCGRG	1 cut(s)	446
EcoICRI	GAGCTC	2 cut(s)	6, 451
EcoO109I	RGGNCCY	2 cut(s)	100, 101
EcoT14I	CCWWGG	2 cut(s)	44, 104
EcoT38I	GRGCYC	3 cut(s)	8, 104, 453
ErhI	CCWWGG	2 cut(s)	44, 104
FaeI	CATG	3 cut(s)	48, 55, 551
FaiI	YATR	7 cut(s)	46, 53, 122, 273, 416, 474, 549
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	3 cut(s)	44, 51, 547
FblI	GTMKAC	1 cut(s)	541
FriOI	GRGCYC	3 cut(s)	8, 104, 453
FspBI	CTAG	2 cut(s)	81, 591
HaeIII	GGCC	2 cut(s)	43, 102
Hin1II	CATG	3 cut(s)	48, 55, 551
HincII	GTYRAC	1 cut(s)	542
HindII	GTYRAC	1 cut(s)	542
HinfI	GANTC	3 cut(s)	61, 238, 244
HphI	GGTGA	2 cut(s)	165, 324
Hpy166II	GTNNAC	1 cut(s)	542
Hpy188I	TCNGA	4 cut(s)	69, 243, 397, 576
Hpy188III	TCNNGA	1 cut(s)	248
Hpy8I	GTNNAC	1 cut(s)	542
HpyAV	CCTTC	2 cut(s)	464, 496
HpyCH4III	ACNGT	1 cut(s)	177
HpyCH4V	TGCA	6 cut(s)	124, 208, 218, 342, 351, 425
HpyF10VI	GCNNNNNNNGC	2 cut(s)	348, 448
HpyF3I	CTNAG	3 cut(s)	66, 242, 394
Hsp92II	CATG	3 cut(s)	48, 55, 551
LguI	GCTCTTC	1 cut(s)	246
LmnI	GCTCC	2 cut(s)	95, 456
LweI	GCATC	2 cut(s)	205, 412
MaeI	CTAG	2 cut(s)	81, 591
MaeIII	GTNAC	1 cut(s)	171
MboII	GAAGA	4 cut(s)	171, 263, 563, 589
MhlI	GDGCHC	4 cut(s)	8, 104, 453, 514
MlsI	TGGCCA	1 cut(s)	43
MluCI	AATT	3 cut(s)	73, 148, 364
MluNI	TGGCCA	1 cut(s)	43
MlyI	GAGTC	3 cut(s)	55, 247, 253
MnlI	CCTC	7 cut(s)	75, 91, 256, 295, 301, 370, 501
Mox20I	TGGCCA	1 cut(s)	43
MscI	TGGCCA	1 cut(s)	43
MseI	TTAA	3 cut(s)	198, 363, 405
MslI	CAYNNNNRTG	2 cut(s)	337, 413
Msp20I	TGGCCA	1 cut(s)	43
Mva1269I	GAATGC	1 cut(s)	278
MwoI	GCNNNNNNNGC	2 cut(s)	348, 448
NcoI	CCATGG	1 cut(s)	44
NlaIII	CATG	3 cut(s)	48, 55, 551
NlaIV	GGNNCC	2 cut(s)	102, 136
NmuCI	GTSAC	1 cut(s)	171
NspI	RCATGY	1 cut(s)	551
PciI	ACATGT	1 cut(s)	547
PciSI	GCTCTTC	1 cut(s)	246
PctI	GAATGC	1 cut(s)	278
PleI	GAGTC	3 cut(s)	55, 246, 252
PpsI	GAGTC	3 cut(s)	55, 246, 252
PscI	ACATGT	1 cut(s)	547
Psp124BI	GAGCTC	2 cut(s)	8, 453
PspN4I	GGNNCC	2 cut(s)	102, 136
PspOMI	GGGCCC	1 cut(s)	100
PspPI	GGNCC	3 cut(s)	100, 101, 135
RsaI	GTAC	1 cut(s)	477
RsaNI	GTAC	1 cut(s)	476
RseI	CAYNNNNRTG	2 cut(s)	337, 413
SacI	GAGCTC	2 cut(s)	8, 453
SalI	GTCGAC	1 cut(s)	540
SapI	GCTCTTC	1 cut(s)	246
SaqAI	TTAA	3 cut(s)	198, 363, 405
Sau96I	GGNCC	3 cut(s)	100, 101, 135
SchI	GAGTC	3 cut(s)	55, 247, 253
SduI	GDGCHC	4 cut(s)	8, 104, 453, 514
SetI	ASST	6 cut(s)	8, 381, 453, 481, 562, 608
SfaNI	GCATC	2 cut(s)	205, 412
SfcI	CTRYAG	1 cut(s)	369
SinI	GGWCC	1 cut(s)	135
SmiMI	CAYNNNNRTG	2 cut(s)	337, 413
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
Sse9I	AATT	3 cut(s)	73, 148, 364
SsiI	CCGC	2 cut(s)	260, 288
SspMI	CTAG	2 cut(s)	81, 591
SstI	GAGCTC	2 cut(s)	8, 453
StyI	CCWWGG	2 cut(s)	44, 104
TaaI	ACNGT	1 cut(s)	177
TaqI	TCGA	1 cut(s)	541
TasI	AATT	3 cut(s)	73, 148, 364
Tru1I	TTAA	3 cut(s)	198, 363, 405
Tru9I	TTAA	3 cut(s)	198, 363, 405
TscAI	CASTG	1 cut(s)	519
TseFI	GTSAC	1 cut(s)	171
Tsp45I	GTSAC	1 cut(s)	171
TspDTI	ATGAA	3 cut(s)	68, 446, 596
TspGWI	ACGGA	1 cut(s)	127
TspRI	CASTG	1 cut(s)	519
VpaK11BI	GGWCC	1 cut(s)	135
XceI	RCATGY	1 cut(s)	551
XmiI	GTMKAC	1 cut(s)	541
XspI	CTAG	2 cut(s)	81, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.