Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0015218

Physical Location & Seq

Genomic Coordinates Reverse (-)

2076293 .. 2077065

Gene Structure 773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g03360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGGTTCTACTCCAAAACAGCCTTTGTTTTGCCTAAAATGGCCATGGGACATGAACCCGAATCCGAAAACCAACACCCATAGCGTTTGCTCCTTTGAGGGTCCTTGGCTGTTCAAATCTGTGCAAACTATCGGGTCCCTTGCTTTCAATTTCGTCAGCTCAGTTTCAGGTTCTTCGACTCCGTTGATCAACAACTTAAAGCCCTTCCGAATGGATGCAAGAACCGGCCAAGGTAAGGCTTCGAAGTCGAAAACAGTCTTGAGTCCGGAAGAGCAGGGGGAGGCGGAGCATAGGGCGTTTGCCTCGGCATTGGCAAGTGCGAAAGAGGCTACGGTGGTTGAGTTTTATTCACCCAAATGCAGGCTGTGCAATTCTTTGCTTAATTTTGTCGTGGAGGTTGAGAGTAGGAACTCGGAGTGGCTTAACATTGTTATGGCAGATGCAGAGAACGAGAAATGGCTTCCCGAGCTCCTCCATTACGACATCAGATATGTGCCTTGCTTTGTTATACTGGACAAGAAGGGGAGGGCGCTGGCGAAGACCGGGATTCCGAGCAGTCGACTGCACGTAATAGCAGGCCTCTCTCATCTTCTCAAGATGAAGCGTCCTCACGAAAGTAATAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0044424 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

209

Amino Acids

23.18

Weight (kDa)

9.11

Isoelectric Point (pI)

36.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	96 - 177	4e-08	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0015218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06430
fragaria_vesca	FvH4_2g40760 FvH4_2g40760
malus_domestica	MD15G1036100.v1.1
prunus_persica	Prupe.1G390300_v2.0.a1 Prupe.1G390300_v2.0.a1
pyrus_communis	pycom15g03360
rosa_chinensis	RchiOBHm_Chr6g0299831
rosa_laevigata	RLG00000011385
rosa_roxburghii	Rroxscaffold_7G00168340
rosa_rugosa	Rorug06G0292600
rosa_samantha	Rh6AG403700 Rh6BG412000 Rh6CG418100 Rh6DG404900
rosa_wichuraiana	Rw6G035320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	559
AccIII	TCCGGA	1 cut(s)	265
AciI	CCGC	1 cut(s)	284
AcoI	YGGCCR	2 cut(s)	41, 226
AfiI	CCNNNNNNNGG	2 cut(s)	235, 360
AgsI	TTSAA	2 cut(s)	115, 148
AluBI	AGCT	3 cut(s)	159, 469, 624
AluI	AGCT	3 cut(s)	159, 469, 624
Alw21I	GWGCWC	1 cut(s)	471
Ama87I	CYCGRG	1 cut(s)	464
Aor13HI	TCCGGA	1 cut(s)	265
AoxI	GGCC	3 cut(s)	41, 226, 577
AspLEI	GCGC	1 cut(s)	532
AspS9I	GGNCC	2 cut(s)	101, 135
AsuC2I	CCSGG	1 cut(s)	544
AsuHPI	GGTGA	1 cut(s)	342
AsuII	TTCGAA	1 cut(s)	242
AvaI	CYCGRG	1 cut(s)	464
AvaII	GGWCC	2 cut(s)	101, 135
BalI	TGGCCA	1 cut(s)	43
BanII	GRGCYC	1 cut(s)	471
BbsI	GAAGAC	1 cut(s)	545
Bbv12I	GWGCWC	1 cut(s)	471
BclI	TGATCA	1 cut(s)	186
BcnI	CCSGG	1 cut(s)	544
BfoI	RGCGCY	1 cut(s)	533
Bme1390I	CCNGG	1 cut(s)	544
Bme18I	GGWCC	2 cut(s)	101, 135
BmeT110I	CYCGRG	1 cut(s)	464
BmgT120I	GGNCC	2 cut(s)	101, 135
BmiI	GGNNCC	3 cut(s)	102, 136, 137
BmrFI	CCNGG	1 cut(s)	544
BmsI	GCATC	2 cut(s)	205, 430
BpiI	GAAGAC	1 cut(s)	545
Bpu14I	TTCGAA	1 cut(s)	242
BpuEI	CTTGAG	2 cut(s)	280, 578
BpuMI	CCSGG	1 cut(s)	544
BsaAI	YACGTR	1 cut(s)	568
BsaJI	CCNNGG	4 cut(s)	44, 104, 229, 303
BsaWI	WCCGGW	1 cut(s)	265
Bsc4I	CCNNNNNNNGG	2 cut(s)	235, 360
Bse118I	RCCGGY	1 cut(s)	224
Bse1I	ACTGG	1 cut(s)	516
BseAI	TCCGGA	1 cut(s)	265
BseDI	CCNNGG	4 cut(s)	44, 104, 229, 303
BseGI	GGATG	1 cut(s)	220
BseLI	CCNNNNNNNGG	2 cut(s)	235, 360
BseMII	CTCAG	1 cut(s)	174
BseNI	ACTGG	1 cut(s)	516
BseRI	GAGGAG	1 cut(s)	461
BsgI	GTGCAG	1 cut(s)	548
BshFI	GGCC	3 cut(s)	43, 228, 579
BsiHKAI	GWGCWC	1 cut(s)	471
BsiHKCI	CYCGRG	1 cut(s)	464
BsiSI	CCGG	3 cut(s)	225, 266, 543
BslFI	GGGAC	2 cut(s)	62, 121
BslI	CCNNNNNNNGG	2 cut(s)	235, 360
BsmFI	GGGAC	2 cut(s)	62, 121
BsnI	GGCC	3 cut(s)	43, 228, 579
BsoBI	CYCGRG	1 cut(s)	464
Bsp119I	TTCGAA	1 cut(s)	242
Bsp1286I	GDGCHC	1 cut(s)	471
Bsp13I	TCCGGA	1 cut(s)	265
Bsp143I	GATC	1 cut(s)	186
Bsp19I	CCATGG	1 cut(s)	44
BspACI	CCGC	1 cut(s)	284
BspANI	GGCC	3 cut(s)	43, 228, 579
BspCNI	CTCAG	1 cut(s)	173
BspEI	TCCGGA	1 cut(s)	265
BspLI	GGNNCC	3 cut(s)	102, 136, 137
BspQI	GCTCTTC	1 cut(s)	264
BspT104I	TTCGAA	1 cut(s)	242
BsrFI	RCCGGY	1 cut(s)	224
BsrI	ACTGG	1 cut(s)	516
BssAI	RCCGGY	1 cut(s)	224
BssECI	CCNNGG	4 cut(s)	44, 104, 229, 303
BssMI	GATC	1 cut(s)	186
BssT1I	CCWWGG	3 cut(s)	44, 104, 229
Bst4CI	ACNGT	2 cut(s)	256, 334
Bst6I	CTCTTC	1 cut(s)	264
BstAPI	GCANNNNNTGC	1 cut(s)	366
BstBAI	YACGTR	1 cut(s)	568
BstBI	TTCGAA	1 cut(s)	242
BstC8I	GCNNGC	3 cut(s)	362, 534, 577
BstDEI	CTNAG	1 cut(s)	160
BstDSI	CCRYGG	1 cut(s)	44
BstF5I	GGATG	1 cut(s)	220
BstH2I	RGCGCY	1 cut(s)	533
BstHHI	GCGC	1 cut(s)	532
BstKTI	GATC	1 cut(s)	189
BstMBI	GATC	1 cut(s)	186
BstMWI	GCNNNNNNNGC	3 cut(s)	326, 366, 466
BstSCI	CCNGG	1 cut(s)	542
BstV2I	GAAGAC	1 cut(s)	545
BsuRI	GGCC	3 cut(s)	43, 228, 579
BtgI	CCRYGG	1 cut(s)	44
BtsCI	GGATG	1 cut(s)	220
Cac8I	GCNNGC	3 cut(s)	362, 534, 577
CfoI	GCGC	1 cut(s)	532
Cfr10I	RCCGGY	1 cut(s)	224
Cfr13I	GGNCC	2 cut(s)	101, 135
CseI	GACGC	1 cut(s)	593
CviAII	CATG	2 cut(s)	45, 52
DdeI	CTNAG	1 cut(s)	160
DpnI	GATC	1 cut(s)	188
DpnII	GATC	1 cut(s)	186
EaeI	YGGCCR	2 cut(s)	41, 226
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
EciI	GGCGGA	1 cut(s)	299
Ecl136II	GAGCTC	1 cut(s)	469
Eco130I	CCWWGG	3 cut(s)	44, 104, 229
Eco147I	AGGCCT	1 cut(s)	579
Eco24I	GRGCYC	1 cut(s)	471
Eco47I	GGWCC	2 cut(s)	101, 135
Eco53kI	GAGCTC	1 cut(s)	469
Eco88I	CYCGRG	1 cut(s)	464
EcoICRI	GAGCTC	1 cut(s)	469
EcoO109I	RGGNCCY	2 cut(s)	101, 135
EcoT14I	CCWWGG	3 cut(s)	44, 104, 229
EcoT38I	GRGCYC	1 cut(s)	471
ErhI	CCWWGG	3 cut(s)	44, 104, 229
FaeI	CATG	2 cut(s)	48, 55
FaiI	YATR	7 cut(s)	46, 53, 81, 291, 434, 492, 509
FaqI	GGGAC	2 cut(s)	62, 121
FatI	CATG	2 cut(s)	44, 51
FbaI	TGATCA	1 cut(s)	186
FblI	GTMKAC	1 cut(s)	559
FokI	GGATG	1 cut(s)	227
FriOI	GRGCYC	1 cut(s)	471
GlaI	GCGC	1 cut(s)	531
HaeII	RGCGCY	1 cut(s)	533
HaeIII	GGCC	3 cut(s)	43, 228, 579
HapII	CCGG	3 cut(s)	225, 266, 543
HgaI	GACGC	1 cut(s)	593
HhaI	GCGC	1 cut(s)	532
Hin1II	CATG	2 cut(s)	48, 55
Hin6I	GCGC	1 cut(s)	530
HinP1I	GCGC	1 cut(s)	530
HincII	GTYRAC	1 cut(s)	560
HindII	GTYRAC	1 cut(s)	560
HinfI	GANTC	4 cut(s)	61, 178, 262, 547
HpaII	CCGG	3 cut(s)	225, 266, 543
HphI	GGTGA	1 cut(s)	342
Hpy166II	GTNNAC	1 cut(s)	560
Hpy188I	TCNGA	5 cut(s)	66, 209, 415, 488, 552
Hpy188III	TCNNGA	5 cut(s)	259, 266, 464, 595, 611
Hpy8I	GTNNAC	1 cut(s)	560
HpyAV	CCTTC	2 cut(s)	214, 514
HpyCH4III	ACNGT	2 cut(s)	256, 334
HpyCH4IV	ACGT	1 cut(s)	567
HpyCH4V	TGCA	6 cut(s)	124, 218, 360, 369, 443, 565
HpyF10VI	GCNNNNNNNGC	3 cut(s)	326, 366, 466
HpyF3I	CTNAG	1 cut(s)	160
HpySE526I	ACGT	1 cut(s)	567
Hsp92II	CATG	2 cut(s)	48, 55
HspAI	GCGC	1 cut(s)	530
KflI	GGGWCCC	1 cut(s)	135
Kpn2I	TCCGGA	1 cut(s)	265
Ksp22I	TGATCA	1 cut(s)	186
Kzo9I	GATC	1 cut(s)	186
LguI	GCTCTTC	1 cut(s)	264
LmnI	GCTCC	3 cut(s)	95, 286, 474
LpnPI	CCDG	9 cut(s)	153, 238, 260, 279, 346, 497, 518, 556, 561
LweI	GCATC	2 cut(s)	205, 430
MaeII	ACGT	1 cut(s)	567
MalI	GATC	1 cut(s)	188
MboI	GATC	1 cut(s)	186
MboII	GAAGA	4 cut(s)	165, 281, 550, 581
MhlI	GDGCHC	1 cut(s)	471
MlsI	TGGCCA	1 cut(s)	43
MluCI	AATT	3 cut(s)	148, 370, 382
MluNI	TGGCCA	1 cut(s)	43
MlyI	GAGTC	2 cut(s)	172, 271
MnlI	CCTC	9 cut(s)	91, 274, 313, 319, 388, 482, 519, 590, 618
Mox20I	TGGCCA	1 cut(s)	43
MroI	TCCGGA	1 cut(s)	265
MscI	TGGCCA	1 cut(s)	43
MseI	TTAA	3 cut(s)	197, 381, 423
MslI	CAYNNNNRTG	2 cut(s)	355, 431
Msp20I	TGGCCA	1 cut(s)	43
MspI	CCGG	3 cut(s)	225, 266, 543
MspR9I	CCNGG	1 cut(s)	544
MwoI	GCNNNNNNNGC	3 cut(s)	326, 366, 466
NciI	CCSGG	1 cut(s)	544
NcoI	CCATGG	1 cut(s)	44
NdeII	GATC	1 cut(s)	186
NlaIII	CATG	2 cut(s)	48, 55
NlaIV	GGNNCC	3 cut(s)	102, 136, 137
NmeAIII	GCCGAG	1 cut(s)	284
NspV	TTCGAA	1 cut(s)	242
PceI	AGGCCT	1 cut(s)	579
PciSI	GCTCTTC	1 cut(s)	264
PfeI	GAWTC	2 cut(s)	61, 547
PleI	GAGTC	2 cut(s)	172, 270
PpsI	GAGTC	2 cut(s)	172, 270
Ppu21I	YACGTR	1 cut(s)	568
PpuMI	RGGWCCY	2 cut(s)	101, 135
Psp124BI	GAGCTC	1 cut(s)	471
Psp5II	RGGWCCY	2 cut(s)	101, 135
PspN4I	GGNNCC	3 cut(s)	102, 136, 137
PspPI	GGNCC	2 cut(s)	101, 135
PspPPI	RGGWCCY	2 cut(s)	101, 135
RseI	CAYNNNNRTG	2 cut(s)	355, 431
SacI	GAGCTC	1 cut(s)	471
SalI	GTCGAC	1 cut(s)	558
SapI	GCTCTTC	1 cut(s)	264
SaqAI	TTAA	3 cut(s)	197, 381, 423
Sau3AI	GATC	1 cut(s)	186
Sau96I	GGNCC	2 cut(s)	101, 135
SchI	GAGTC	2 cut(s)	172, 271
ScrFI	CCNGG	1 cut(s)	544
SduI	GDGCHC	1 cut(s)	471
SetI	ASST	7 cut(s)	161, 172, 235, 399, 471, 570, 626
SfaNI	GCATC	2 cut(s)	205, 430
SfuI	TTCGAA	1 cut(s)	242
SinI	GGWCC	2 cut(s)	101, 135
SmiMI	CAYNNNNRTG	2 cut(s)	355, 431
SmlI	CTYRAG	2 cut(s)	259, 593
SmoI	CTYRAG	2 cut(s)	259, 593
Sse9I	AATT	3 cut(s)	148, 370, 382
SseBI	AGGCCT	1 cut(s)	579
SsiI	CCGC	1 cut(s)	284
SstI	GAGCTC	1 cut(s)	471
StuI	AGGCCT	1 cut(s)	579
StyD4I	CCNGG	1 cut(s)	542
StyI	CCWWGG	3 cut(s)	44, 104, 229
TaaI	ACNGT	2 cut(s)	256, 334
TaiI	ACGT	1 cut(s)	570
TaqI	TCGA	4 cut(s)	176, 242, 248, 559
TasI	AATT	3 cut(s)	148, 370, 382
TfiI	GAWTC	2 cut(s)	61, 547
Tru1I	TTAA	3 cut(s)	197, 381, 423
Tru9I	TTAA	3 cut(s)	197, 381, 423
TspDTI	ATGAA	2 cut(s)	68, 614
TspGWI	ACGGA	1 cut(s)	171
VpaK11BI	GGWCC	2 cut(s)	101, 135
XmiI	GTMKAC	1 cut(s)	559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.