Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004380

Physical Location & Seq

Genomic Coordinates Reverse (-)

44464930 .. 44467603

Gene Structure 2674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0292600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGCTGGCAAGGAGGGCCGTCTCATTCTTGAAGAGCTCCTCAGCTCCACACTTTTCCAGTGTGGCTGCTTCGGCGAAAACTGTGGATGAAGCGAAGACCAAATGGTTTGGTCGCAAGGCTGTGAATTATCTTTTGATTACTGTTACCGGCGGCGTTGCTTTGAGTGCTCTTGATGATCTTATTATTTATCAGAGCTGTAGCAGCAAGGCCATGGAGAAAGCCAGTAAGGACCCAGCCATTCGAGATGCTCTAGGGGAACCTGTTTTGAAGGGCCCATGGTACAATGCACAGCTTGGAGTGGCTCATAAGAGGCAATCTGTATCTTGCAAATTTCCTGTGTATGGACCAAAAGGCACAGGAGTTCTCAGCGTGAAGGCTGTACGTGATGGAGATGATTCCTGGATCTCATATCTCATACCTCGCAATTGGGATATCTTAATAATGGATGCTCTCCTCCATATTCCTGAAAATGAAGAGAAGCAGCAAACAATACGGATTACCATCCCAGAGCCTGCTTGCACGGCTTCAGCATGTACAGCATGCACCGGCCCTAGTTGCAGCACTCAAGAATCTCAGAATCCAGAGAAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0030587 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032502 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051703 GO:0051704 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080090 GO:0090702 GO:0099120 GO:0099568 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spc97_Spc98

Protein Analysis

197

Amino Acids

21.31

Weight (kDa)

8.87

Isoelectric Point (pI)

56.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Coa1	PF08695	46 - 132	9.2e-06	Cytochrome oxidase complex assembly protein 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20570 AT1G20570 AT1G20570 AT1G20570 AT1G80260 AT1G80260 AT1G80260
fragaria_vesca	FvH4_2g40750 FvH4_2g40750 FvH4_2g40750
malus_domestica	MD15G1036000.v1.1
prunus_persica	Prupe.1G389900_v2.0.a1 Prupe.1G389900_v2.0.a1 Prupe.1G389900_v2.0.a1 Prupe.1G389900_v2.0.a1 Prupe.1G389900_v2.0.a1 Prupe.1G389900_v2.0.a1 Prupe.1G389900_v2.0.a1 Prupe.1G389900_v2.0.a1 Prupe.1G389900_v2.0.a1 Prupe.1G389900_v2.0.a1
pyrus_communis	pycom15g03350
rosa_chinensis	RchiOBHm_Chr6g0299841
rosa_laevigata	RLG00000011384
rosa_multiflora	Rmu_ssc0000048.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168330
rosa_rugosa	Rorug06G0292600
rosa_samantha	Rh6AG403800 Rh6BG412100 Rh6CG418200 Rh6DG405000
rosa_wichuraiana	Rw6G035330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	150
AclWI	GGATC	1 cut(s)	410
AcsI	RAATTY	1 cut(s)	329
AcuI	CTGAAG	1 cut(s)	510
AfaI	GTAC	3 cut(s)	281, 381, 535
AfiI	CCNNNNNNNGG	1 cut(s)	341
AgsI	TTSAA	2 cut(s)	31, 268
AjnI	CCWGG	1 cut(s)	398
AluBI	AGCT	4 cut(s)	36, 44, 195, 292
AluI	AGCT	4 cut(s)	36, 44, 195, 292
Alw21I	GWGCWC	2 cut(s)	38, 169
Alw26I	GTCTC	1 cut(s)	25
AlwI	GGATC	1 cut(s)	410
AlwNI	CAGNNNCTG	1 cut(s)	512
AoxI	GGCC	4 cut(s)	15, 207, 271, 547
ApaI	GGGCCC	1 cut(s)	275
ApeKI	GCWGC	4 cut(s)	65, 201, 481, 558
ApoI	RAATTY	1 cut(s)	329
AspS9I	GGNCC	6 cut(s)	15, 229, 271, 272, 344, 548
AvaII	GGWCC	2 cut(s)	229, 344
BaeGI	GKGCMC	1 cut(s)	275
BanII	GRGCYC	2 cut(s)	38, 275
BbsI	GAAGAC	1 cut(s)	101
Bbv12I	GWGCWC	2 cut(s)	38, 169
BbvCI	CCTCAGC	1 cut(s)	40
BbvI	GCAGC	4 cut(s)	52, 213, 493, 570
BccI	CCATC	2 cut(s)	380, 509
BceAI	ACGGC	2 cut(s)	2, 537
BciT130I	CCWGG	1 cut(s)	400
BcoDI	GTCTC	1 cut(s)	25
BfaI	CTAG	2 cut(s)	251, 552
BfmI	CTRYAG	1 cut(s)	196
BisI	GCNGC	5 cut(s)	66, 151, 202, 482, 559
BlsI	GCNGC	5 cut(s)	67, 152, 203, 483, 560
Bme1390I	CCNGG	1 cut(s)	400
Bme18I	GGWCC	2 cut(s)	229, 344
BmgT120I	GGNCC	6 cut(s)	15, 229, 271, 272, 344, 548
BmiI	GGNNCC	3 cut(s)	231, 258, 273
BmrFI	CCNGG	1 cut(s)	400
BmsI	GCATC	2 cut(s)	235, 436
BpiI	GAAGAC	1 cut(s)	101
Bpu10I	CCTNAGC	1 cut(s)	40
BpuEI	CTTGAG	1 cut(s)	549
BsaAI	YACGTR	1 cut(s)	383
BsaBI	GATNNNNATC	1 cut(s)	500
BsaJI	CCNNGG	2 cut(s)	210, 275
Bsc4I	CCNNNNNNNGG	1 cut(s)	341
Bse118I	RCCGGY	2 cut(s)	146, 545
Bse1I	ACTGG	2 cut(s)	57, 222
Bse8I	GATNNNNATC	1 cut(s)	500
BseBI	CCWGG	1 cut(s)	400
BseDI	CCNNGG	2 cut(s)	210, 275
BseGI	GGATG	3 cut(s)	91, 451, 501
BseJI	GATNNNNATC	1 cut(s)	500
BseLI	CCNNNNNNNGG	1 cut(s)	341
BseMII	CTCAG	3 cut(s)	54, 379, 587
BseNI	ACTGG	2 cut(s)	57, 222
BseRI	GAGGAG	2 cut(s)	28, 443
BseSI	GKGCMC	1 cut(s)	275
BseXI	GCAGC	4 cut(s)	52, 213, 493, 570
BseYI	CCCAGC	1 cut(s)	232
BshFI	GGCC	4 cut(s)	17, 209, 273, 549
BsiHKAI	GWGCWC	2 cut(s)	38, 169
BsiSI	CCGG	2 cut(s)	147, 546
BslI	CCNNNNNNNGG	1 cut(s)	341
BsmAI	GTCTC	1 cut(s)	25
BsmBI	CGTCTC	1 cut(s)	25
BsnI	GGCC	4 cut(s)	17, 209, 273, 549
Bsp120I	GGGCCC	1 cut(s)	271
Bsp1286I	GDGCHC	3 cut(s)	38, 169, 275
Bsp1407I	TGTACA	1 cut(s)	533
Bsp143I	GATC	2 cut(s)	175, 402
Bsp19I	CCATGG	2 cut(s)	210, 275
BspACI	CCGC	1 cut(s)	150
BspANI	GGCC	4 cut(s)	17, 209, 273, 549
BspCNI	CTCAG	3 cut(s)	53, 378, 586
BspLI	GGNNCC	3 cut(s)	231, 258, 273
BspPI	GGATC	1 cut(s)	410
BspQI	GCTCTTC	1 cut(s)	26
BsrFI	RCCGGY	2 cut(s)	146, 545
BsrGI	TGTACA	1 cut(s)	533
BsrI	ACTGG	2 cut(s)	57, 222
BssAI	RCCGGY	2 cut(s)	146, 545
BssECI	CCNNGG	2 cut(s)	210, 275
BssMI	GATC	2 cut(s)	175, 402
BssT1I	CCWWGG	2 cut(s)	210, 275
Bst2UI	CCWGG	1 cut(s)	400
Bst4CI	ACNGT	2 cut(s)	82, 142
Bst6I	CTCTTC	2 cut(s)	26, 468
BstAUI	TGTACA	1 cut(s)	533
BstBAI	YACGTR	1 cut(s)	383
BstC8I	GCNNGC	4 cut(s)	6, 513, 517, 541
BstDEI	CTNAG	3 cut(s)	40, 365, 573
BstDSI	CCRYGG	2 cut(s)	210, 275
BstF5I	GGATG	3 cut(s)	91, 451, 501
BstKTI	GATC	2 cut(s)	178, 405
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	2 cut(s)	175, 402
BstMWI	GCNNNNNNNGC	7 cut(s)	14, 71, 164, 201, 521, 536, 555
BstNI	CCWGG	1 cut(s)	400
BstNSI	RCATGY	2 cut(s)	534, 543
BstSCI	CCNGG	1 cut(s)	398
BstSFI	CTRYAG	1 cut(s)	196
BstSLI	GKGCMC	1 cut(s)	275
BstV1I	GCAGC	4 cut(s)	52, 213, 493, 570
BstV2I	GAAGAC	1 cut(s)	101
BstX2I	RGATCY	1 cut(s)	402
BstYI	RGATCY	1 cut(s)	402
BsuRI	GGCC	4 cut(s)	17, 209, 273, 549
BtgI	CCRYGG	2 cut(s)	210, 275
BtsCI	GGATG	3 cut(s)	91, 451, 501
BtsIMutI	CAGTG	1 cut(s)	64
Cac8I	GCNNGC	4 cut(s)	6, 513, 517, 541
CaiI	CAGNNNCTG	1 cut(s)	512
Cfr10I	RCCGGY	2 cut(s)	146, 545
Cfr13I	GGNCC	6 cut(s)	15, 229, 271, 272, 344, 548
Csp6I	GTAC	3 cut(s)	280, 380, 534
CviAII	CATG	4 cut(s)	211, 276, 531, 540
CviQI	GTAC	3 cut(s)	280, 380, 534
DdeI	CTNAG	3 cut(s)	40, 365, 573
DpnI	GATC	2 cut(s)	177, 404
DpnII	GATC	2 cut(s)	175, 402
Eam1104I	CTCTTC	2 cut(s)	26, 468
EarI	CTCTTC	2 cut(s)	26, 468
Ecl136II	GAGCTC	1 cut(s)	36
Eco130I	CCWWGG	2 cut(s)	210, 275
Eco24I	GRGCYC	2 cut(s)	38, 275
Eco32I	GATATC	1 cut(s)	433
Eco47I	GGWCC	2 cut(s)	229, 344
Eco53kI	GAGCTC	1 cut(s)	36
Eco57I	CTGAAG	1 cut(s)	510
EcoICRI	GAGCTC	1 cut(s)	36
EcoO109I	RGGNCCY	2 cut(s)	229, 271
EcoRII	CCWGG	1 cut(s)	398
EcoRV	GATATC	1 cut(s)	433
EcoT14I	CCWWGG	2 cut(s)	210, 275
EcoT38I	GRGCYC	2 cut(s)	38, 275
ErhI	CCWWGG	2 cut(s)	210, 275
Esp3I	CGTCTC	1 cut(s)	25
FaeI	CATG	4 cut(s)	214, 279, 534, 543
FaiI	YATR	9 cut(s)	212, 277, 306, 342, 409, 416, 459, 532, 541
FatI	CATG	4 cut(s)	210, 275, 530, 539
Fnu4HI	GCNGC	5 cut(s)	66, 151, 202, 482, 559
FokI	GGATG	3 cut(s)	98, 458, 488
FriOI	GRGCYC	2 cut(s)	38, 275
Fsp4HI	GCNGC	5 cut(s)	66, 151, 202, 482, 559
FspBI	CTAG	2 cut(s)	251, 552
GluI	GCNGC	5 cut(s)	66, 151, 202, 482, 559
GsaI	CCCAGC	1 cut(s)	236
HaeIII	GGCC	4 cut(s)	17, 209, 273, 549
HapII	CCGG	2 cut(s)	147, 546
Hin1II	CATG	4 cut(s)	214, 279, 534, 543
HinfI	GANTC	3 cut(s)	395, 569, 577
HpaII	CCGG	2 cut(s)	147, 546
Hpy188I	TCNGA	2 cut(s)	192, 576
Hpy188III	TCNNGA	6 cut(s)	28, 170, 242, 464, 566, 581
HpyAV	CCTTC	2 cut(s)	262, 367
HpyCH4III	ACNGT	2 cut(s)	82, 142
HpyCH4IV	ACGT	1 cut(s)	382
HpyCH4V	TGCA	5 cut(s)	287, 327, 519, 543, 558
HpyF10VI	GCNNNNNNNGC	7 cut(s)	14, 71, 164, 201, 521, 536, 555
HpyF3I	CTNAG	3 cut(s)	40, 365, 573
HpySE526I	ACGT	1 cut(s)	382
Hsp92II	CATG	4 cut(s)	214, 279, 534, 543
Kzo9I	GATC	2 cut(s)	175, 402
LguI	GCTCTTC	1 cut(s)	26
LmnI	GCTCC	2 cut(s)	41, 49
Lsp1109I	GCAGC	4 cut(s)	52, 213, 493, 570
LweI	GCATC	2 cut(s)	235, 436
MaeI	CTAG	2 cut(s)	251, 552
MaeII	ACGT	1 cut(s)	382
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	2 cut(s)	177, 404
MboI	GATC	2 cut(s)	175, 402
MboII	GAAGA	3 cut(s)	43, 106, 485
MfeI	CAATTG	1 cut(s)	424
MflI	RGATCY	1 cut(s)	402
MhlI	GDGCHC	3 cut(s)	38, 169, 275
MluCI	AATT	3 cut(s)	124, 329, 424
MnlI	CCTC	5 cut(s)	6, 49, 303, 429, 464
MseI	TTAA	1 cut(s)	437
MspI	CCGG	2 cut(s)	147, 546
MspR9I	CCNGG	1 cut(s)	400
MunI	CAATTG	1 cut(s)	424
MvaI	CCWGG	1 cut(s)	400
MwoI	GCNNNNNNNGC	7 cut(s)	14, 71, 164, 201, 521, 536, 555
NcoI	CCATGG	2 cut(s)	210, 275
NdeII	GATC	2 cut(s)	175, 402
NlaIII	CATG	4 cut(s)	214, 279, 534, 543
NlaIV	GGNNCC	3 cut(s)	231, 258, 273
NspI	RCATGY	2 cut(s)	534, 543
PaeI	GCATGC	1 cut(s)	543
PciSI	GCTCTTC	1 cut(s)	26
PfeI	GAWTC	3 cut(s)	395, 569, 577
PfoI	TCCNGGA	1 cut(s)	398
PkrI	GCNGC	5 cut(s)	67, 152, 203, 483, 560
Ppu21I	YACGTR	1 cut(s)	383
PpuMI	RGGWCCY	1 cut(s)	229
Psp124BI	GAGCTC	1 cut(s)	38
Psp5II	RGGWCCY	1 cut(s)	229
Psp6I	CCWGG	1 cut(s)	398
PspFI	CCCAGC	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	398
PspN4I	GGNNCC	3 cut(s)	231, 258, 273
PspOMI	GGGCCC	1 cut(s)	271
PspPI	GGNCC	6 cut(s)	15, 229, 271, 272, 344, 548
PspPPI	RGGWCCY	1 cut(s)	229
PstNI	CAGNNNCTG	1 cut(s)	512
PsuI	RGATCY	1 cut(s)	402
RsaI	GTAC	3 cut(s)	281, 381, 535
RsaNI	GTAC	3 cut(s)	280, 380, 534
SacI	GAGCTC	1 cut(s)	38
SapI	GCTCTTC	1 cut(s)	26
SaqAI	TTAA	1 cut(s)	437
SatI	GCNGC	5 cut(s)	66, 151, 202, 482, 559
Sau3AI	GATC	2 cut(s)	175, 402
Sau96I	GGNCC	6 cut(s)	15, 229, 271, 272, 344, 548
ScrFI	CCNGG	1 cut(s)	400
SduI	GDGCHC	3 cut(s)	38, 169, 275
SetI	ASST	7 cut(s)	38, 46, 197, 262, 294, 385, 421
SfaNI	GCATC	2 cut(s)	235, 436
SfcI	CTRYAG	1 cut(s)	196
SinI	GGWCC	2 cut(s)	229, 344
SmlI	CTYRAG	1 cut(s)	564
SmoI	CTYRAG	1 cut(s)	564
SphI	GCATGC	1 cut(s)	543
Sse9I	AATT	3 cut(s)	124, 329, 424
SsiI	CCGC	1 cut(s)	150
SspMI	CTAG	2 cut(s)	251, 552
SstI	GAGCTC	1 cut(s)	38
StyD4I	CCNGG	1 cut(s)	398
StyI	CCWWGG	2 cut(s)	210, 275
TaaI	ACNGT	2 cut(s)	82, 142
TaiI	ACGT	1 cut(s)	385
TaqI	TCGA	1 cut(s)	241
TasI	AATT	3 cut(s)	124, 329, 424
TatI	WGTACW	1 cut(s)	533
TauI	GCSGC	1 cut(s)	153
TfiI	GAWTC	3 cut(s)	395, 569, 577
Tru1I	TTAA	1 cut(s)	437
Tru9I	TTAA	1 cut(s)	437
TscAI	CASTG	1 cut(s)	64
TseI	GCWGC	4 cut(s)	65, 201, 481, 558
TspDTI	ATGAA	2 cut(s)	102, 486
TspGWI	ACGGA	1 cut(s)	508
TspRI	CASTG	1 cut(s)	64
VpaK11BI	GGWCC	2 cut(s)	229, 344
XapI	RAATTY	1 cut(s)	329
XceI	RCATGY	2 cut(s)	534, 543
XspI	CTAG	2 cut(s)	251, 552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.