Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000048.1

Orthogroup ID

OG0004380

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2916

Gene Structure 2916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000048.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1412 bp

ttctacgagcggctatatttggcggggatagtggatcaacttcttcggccaaaggaaccaactatacatttggttttcggtttggtgaatccgaacatattcgttcacaagacgactcaaaaatgttacaaatgttgtttccttttcccactcttcttccttcttttgaggatgatctccgcatgtcagagctcttacctttccagaaaaatagcacccttccatctagagttcttacttggattcagtattttgaaccgagaagtactccacttcccgtggttatagtgcaggaatgtcttaccgcctacattcagaagcaggtggattgtattggcaggcatgtattgtcgaaattgatgaatgattggaagttgatggatgaactggcagtgttgcgtgctatttacttgttagggtcaggtgatctactacagcacttcttgaccataattttcaataagctggataaaggagaaacatgggatgatgatttcgagttaaacactatattgcaggaatctataagaaactccgctgatggtgtgctactaagtgttcctgattcattgattgtatccctcaccaaaaatcaagatttgaatagcaatgagcagcctagtatggcttcccttccctcaactcctcgtaaaagtcgtgctaacagctttggaatggatggacttgatctactacagtttacatacaaggtctcttggccacttgaacttattgcaaatgcagaagcgatcaagaaatataaccaagtcatgggattcttgctgaaggtcaagcgagcaaagtttgtactggataaagctcgaagatggatgtggaagggtagaggcagggcagcgaacagctttaagcatcactggttagtggagcagaaacttctccattttgtggatgcgtttcaccagtatgtgatggacagagtgtatcacaatgcatggcgtgaactttgtgaaggtatggcagccgctcgttctctggatgaagtcattgaagtacatgaggcgtacttgttgtcaattcagcgacagtgctttgtagttccagataagctgtgggctctcattgcaaccaggataaacaacattttgggattagcattggacttttactctatacagctgacacttagtggtggagcagtttctgcaatcaaggccaaatgtgaaatggaagttgaacgtattgagaaacagttcgatgattgcatcgcttttctgctcagagtactctccttcaaactcaatgtaggacacttccctcatttagcagatttggttactaggatcaactacaaccacttttacatgtcagatactggaaacctaaggactctcccaagctctgaaaatgttgcttctagactgggaaaagcttttttaggtagaacagactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0030587 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032502 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051703 GO:0051704 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080090 GO:0090702 GO:0099120 GO:0099568 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spc97_Spc98

Protein Analysis

469

Amino Acids

53.47

Weight (kDa)

7.31

Isoelectric Point (pI)

42.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20570 AT1G20570 AT1G20570 AT1G20570 AT1G80260 AT1G80260 AT1G80260
fragaria_vesca	FvH4_2g40750 FvH4_2g40750 FvH4_2g40750
malus_domestica	MD15G1036000.v1.1
prunus_persica	Prupe.1G389900_v2.0.a1 Prupe.1G389900_v2.0.a1 Prupe.1G389900_v2.0.a1 Prupe.1G389900_v2.0.a1 Prupe.1G389900_v2.0.a1 Prupe.1G389900_v2.0.a1 Prupe.1G389900_v2.0.a1 Prupe.1G389900_v2.0.a1 Prupe.1G389900_v2.0.a1 Prupe.1G389900_v2.0.a1
pyrus_communis	pycom15g03350
rosa_chinensis	RchiOBHm_Chr6g0299841
rosa_laevigata	RLG00000011384
rosa_multiflora	Rmu_ssc0000048.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168330
rosa_rugosa	Rorug06G0292600
rosa_samantha	Rh6AG403800 Rh6BG412100 Rh6CG418200 Rh6DG405000
rosa_wichuraiana	Rw6G035330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	312
Acc36I	ACCTGC	1 cut(s)	312
AccB7I	CCANNNNNTGG	2 cut(s)	771, 906
AccBSI	CCGCTC	2 cut(s)	10, 985
AciI	CCGC	6 cut(s)	10, 23, 180, 305, 536, 983
AclWI	GGATC	2 cut(s)	42, 1309
AcoI	YGGCCR	2 cut(s)	47, 718
AcuI	CTGAAG	1 cut(s)	805
AdeI	CACNNNGTG	1 cut(s)	1147
AfaI	GTAC	5 cut(s)	267, 809, 1013, 1024, 1244
AfiI	CCNNNNNNNGG	2 cut(s)	771, 906
AflIII	ACRYGT	1 cut(s)	1322
AgsI	TTSAA	7 cut(s)	256, 459, 603, 727, 1009, 1195, 1254
AjnI	CCWGG	1 cut(s)	1087
AluBI	AGCT	9 cut(s)	192, 465, 668, 820, 863, 1068, 1137, 1358, 1390
AluI	AGCT	9 cut(s)	192, 465, 668, 820, 863, 1068, 1137, 1358, 1390
Alw21I	GWGCWC	1 cut(s)	194
Alw26I	GTCTC	1 cut(s)	717
AlwI	GGATC	2 cut(s)	42, 1309
AlwNI	CAGNNNCTG	2 cut(s)	1162, 1333
AoxI	GGCC	3 cut(s)	47, 718, 1172
ApeKI	GCWGC	3 cut(s)	615, 853, 979
Asp700I	GAANNNNTTC	2 cut(s)	98, 1210
AsuHPI	GGTGA	4 cut(s)	97, 436, 576, 910
AxyI	CCTNAGG	1 cut(s)	1342
BalI	TGGCCA	1 cut(s)	720
BanII	GRGCYC	2 cut(s)	194, 1077
Bbv12I	GWGCWC	1 cut(s)	194
BbvI	GCAGC	3 cut(s)	627, 865, 991
BccI	CCATC	6 cut(s)	231, 372, 535, 673, 821, 924
BciT130I	CCWGG	1 cut(s)	1089
BciVI	GTATCC	1 cut(s)	588
BcoDI	GTCTC	1 cut(s)	717
BfaI	CTAG	4 cut(s)	227, 620, 1298, 1376
BfmI	CTRYAG	2 cut(s)	433, 694
BfuAI	ACCTGC	1 cut(s)	312
BfuI	GTATCC	1 cut(s)	588
BisI	GCNGC	5 cut(s)	11, 616, 854, 980, 983
BlsI	GCNGC	5 cut(s)	12, 617, 855, 981, 984
BmcAI	AGTACT	2 cut(s)	267, 1244
Bme1390I	CCNGG	1 cut(s)	1089
BmiI	GGNNCC	1 cut(s)	57
BmrFI	CCNGG	1 cut(s)	1089
BmrI	ACTGGG	1 cut(s)	1390
BmsI	GCATC	3 cut(s)	879, 900, 1232
BmuI	ACTGGG	1 cut(s)	1390
BplI	GAGNNNNNCTC	2 cut(s)	252, 284
BsaI	GGTCTC	1 cut(s)	717
BsaJI	CCNNGG	1 cut(s)	278
Bsc4I	CCNNNNNNNGG	2 cut(s)	771, 906
Bse1I	ACTGG	6 cut(s)	392, 815, 880, 921, 1338, 1385
Bse21I	CCTNAGG	1 cut(s)	1342
Bse3DI	GCAATG	2 cut(s)	615, 1079
BseBI	CCWGG	1 cut(s)	1089
BseDI	CCNNGG	1 cut(s)	278
BseGI	GGATG	7 cut(s)	177, 387, 492, 684, 836, 915, 1002
BseLI	CCNNNNNNNGG	2 cut(s)	771, 906
BseMI	GCAATG	2 cut(s)	615, 1079
BseMII	CTCAG	1 cut(s)	1251
BseNI	ACTGG	6 cut(s)	392, 815, 880, 921, 1338, 1385
BseRI	GAGGAG	1 cut(s)	635
BseXI	GCAGC	3 cut(s)	627, 865, 991
BsgI	GTGCAG	1 cut(s)	310
BshFI	GGCC	3 cut(s)	49, 720, 1174
BsiHKAI	GWGCWC	1 cut(s)	194
BslI	CCNNNNNNNGG	2 cut(s)	771, 906
BsmAI	GTCTC	1 cut(s)	717
BsnI	GGCC	3 cut(s)	49, 720, 1174
Bso31I	GGTCTC	1 cut(s)	717
Bsp1286I	GDGCHC	2 cut(s)	194, 1077
Bsp143I	GATC	6 cut(s)	34, 174, 426, 687, 749, 1301
BspACI	CCGC	6 cut(s)	10, 23, 180, 305, 536, 983
BspANI	GGCC	3 cut(s)	49, 720, 1174
BspCNI	CTCAG	1 cut(s)	1250
BspLI	GGNNCC	1 cut(s)	57
BspMI	ACCTGC	1 cut(s)	312
BspPI	GGATC	2 cut(s)	42, 1309
BspTNI	GGTCTC	1 cut(s)	717
BsrBI	CCGCTC	2 cut(s)	10, 985
BsrDI	GCAATG	2 cut(s)	615, 1079
BsrI	ACTGG	6 cut(s)	392, 815, 880, 921, 1338, 1385
BssECI	CCNNGG	1 cut(s)	278
BssMI	GATC	6 cut(s)	34, 174, 426, 687, 749, 1301
Bst2UI	CCWGG	1 cut(s)	1089
Bst4CI	ACNGT	3 cut(s)	698, 1046, 1211
Bst6I	CTCTTC	1 cut(s)	158
BstAPI	GCANNNNNTGC	1 cut(s)	1162
BstC8I	GCNNGC	3 cut(s)	340, 401, 797
BstDEI	CTNAG	4 cut(s)	553, 1144, 1237, 1342
BstDSI	CCRYGG	1 cut(s)	278
BstF5I	GGATG	7 cut(s)	177, 387, 492, 684, 836, 915, 1002
BstKTI	GATC	6 cut(s)	37, 177, 429, 690, 752, 1304
BstMAI	GTCTC	1 cut(s)	717
BstMBI	GATC	6 cut(s)	34, 174, 426, 687, 749, 1301
BstMWI	GCNNNNNNNGC	3 cut(s)	1081, 1162, 1171
BstNI	CCWGG	1 cut(s)	1089
BstNSI	RCATGY	3 cut(s)	186, 346, 1326
BstSCI	CCNGG	1 cut(s)	1087
BstSFI	CTRYAG	2 cut(s)	433, 694
BstV1I	GCAGC	3 cut(s)	627, 865, 991
Bsu36I	CCTNAGG	1 cut(s)	1342
BsuI	GTATCC	1 cut(s)	588
BsuRI	GGCC	3 cut(s)	49, 720, 1174
BtgI	CCRYGG	1 cut(s)	278
BtgZI	GCGATG	1 cut(s)	1209
BtsCI	GGATG	7 cut(s)	177, 387, 492, 684, 836, 915, 1002
BtsI	GCAGTG	1 cut(s)	398
BtsIMutI	CAGTG	3 cut(s)	398, 873, 1051
BveI	ACCTGC	1 cut(s)	312
Cac8I	GCNNGC	3 cut(s)	340, 401, 797
CaiI	CAGNNNCTG	2 cut(s)	1162, 1333
Csp6I	GTAC	5 cut(s)	266, 808, 1012, 1023, 1243
CviAII	CATG	7 cut(s)	183, 343, 482, 771, 953, 1015, 1323
CviQI	GTAC	5 cut(s)	266, 808, 1012, 1023, 1243
DdeI	CTNAG	4 cut(s)	553, 1144, 1237, 1342
DpnI	GATC	6 cut(s)	36, 176, 428, 689, 751, 1303
DpnII	GATC	6 cut(s)	34, 174, 426, 687, 749, 1301
DraIII	CACNNNGTG	1 cut(s)	1147
EaeI	YGGCCR	2 cut(s)	47, 718
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
Ecl136II	GAGCTC	1 cut(s)	192
Eco24I	GRGCYC	2 cut(s)	194, 1077
Eco31I	GGTCTC	1 cut(s)	717
Eco53kI	GAGCTC	1 cut(s)	192
Eco57I	CTGAAG	1 cut(s)	805
Eco81I	CCTNAGG	1 cut(s)	1342
EcoICRI	GAGCTC	1 cut(s)	192
EcoRII	CCWGG	1 cut(s)	1087
EcoT22I	ATGCAT	1 cut(s)	954
EcoT38I	GRGCYC	2 cut(s)	194, 1077
FaeI	CATG	7 cut(s)	186, 346, 485, 774, 956, 1018, 1326
FatI	CATG	7 cut(s)	182, 342, 481, 770, 952, 1014, 1322
FauI	CCCGC	1 cut(s)	16
Fnu4HI	GCNGC	5 cut(s)	11, 616, 854, 980, 983
FokI	GGATG	7 cut(s)	184, 394, 499, 691, 843, 922, 1009
FriOI	GRGCYC	2 cut(s)	194, 1077
Fsp4HI	GCNGC	5 cut(s)	11, 616, 854, 980, 983
FspBI	CTAG	4 cut(s)	227, 620, 1298, 1376
GluI	GCNGC	5 cut(s)	11, 616, 854, 980, 983
HaeIII	GGCC	3 cut(s)	49, 720, 1174
Hin1II	CATG	7 cut(s)	186, 346, 485, 774, 956, 1018, 1326
HindIII	AAGCTT	1 cut(s)	1388
HinfI	GANTC	7 cut(s)	88, 115, 243, 520, 565, 776, 1347
HphI	GGTGA	4 cut(s)	97, 436, 576, 910
Hpy166II	GTNNAC	3 cut(s)	106, 701, 961
Hpy188I	TCNGA	6 cut(s)	93, 189, 317, 1240, 1329, 1362
Hpy188III	TCNNGA	9 cut(s)	204, 227, 444, 562, 595, 753, 994, 1060, 1376
Hpy8I	GTNNAC	3 cut(s)	106, 701, 961
HpyAV	CCTTC	7 cut(s)	170, 229, 643, 780, 831, 964, 1260
HpyCH4III	ACNGT	3 cut(s)	698, 1046, 1211
HpyCH4IV	ACGT	1 cut(s)	1197
HpyCH4V	TGCA	8 cut(s)	291, 516, 736, 742, 952, 1084, 1165, 1223
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1081, 1162, 1171
HpyF3I	CTNAG	4 cut(s)	553, 1144, 1237, 1342
HpySE526I	ACGT	1 cut(s)	1197
Hsp92II	CATG	7 cut(s)	186, 346, 485, 774, 956, 1018, 1326
Kzo9I	GATC	6 cut(s)	34, 174, 426, 687, 749, 1301
LmnI	GCTCC	2 cut(s)	885, 1153
Lsp1109I	GCAGC	3 cut(s)	627, 865, 991
LweI	GCATC	3 cut(s)	879, 900, 1232
MaeI	CTAG	4 cut(s)	227, 620, 1298, 1376
MaeII	ACGT	1 cut(s)	1197
MaeIII	GTNAC	2 cut(s)	125, 1293
MalI	GATC	6 cut(s)	36, 176, 428, 689, 751, 1303
MbiI	CCGCTC	2 cut(s)	10, 985
MboI	GATC	6 cut(s)	34, 174, 426, 687, 749, 1301
MboII	GAAGA	4 cut(s)	35, 145, 148, 836
MhlI	GDGCHC	2 cut(s)	194, 1077
MlsI	TGGCCA	1 cut(s)	720
MluCI	AATT	3 cut(s)	355, 452, 1034
MluNI	TGGCCA	1 cut(s)	720
MlyI	GAGTC	2 cut(s)	109, 1341
MnlI	CCTC	7 cut(s)	162, 592, 648, 656, 838, 1011, 1286
Mox20I	TGGCCA	1 cut(s)	720
Mph1103I	ATGCAT	1 cut(s)	954
MroXI	GAANNNNTTC	2 cut(s)	98, 1210
MscI	TGGCCA	1 cut(s)	720
MseI	TTAA	2 cut(s)	502, 866
MslI	CAYNNNNRTG	1 cut(s)	923
Msp20I	TGGCCA	1 cut(s)	720
MspA1I	CMGCKG	2 cut(s)	538, 1137
MspR9I	CCNGG	1 cut(s)	1089
MvaI	CCWGG	1 cut(s)	1089
MwoI	GCNNNNNNNGC	3 cut(s)	1081, 1162, 1171
NdeII	GATC	6 cut(s)	34, 174, 426, 687, 749, 1301
NlaIII	CATG	7 cut(s)	186, 346, 485, 774, 956, 1018, 1326
NlaIV	GGNNCC	1 cut(s)	57
NsiI	ATGCAT	1 cut(s)	954
NspI	RCATGY	3 cut(s)	186, 346, 1326
PaqCI	CACCTGC	1 cut(s)	312
PciI	ACATGT	1 cut(s)	1322
PcsI	WCGNNNNNNNCGW	1 cut(s)	654
PdmI	GAANNNNTTC	2 cut(s)	98, 1210
PfeI	GAWTC	5 cut(s)	88, 243, 520, 565, 776
PflMI	CCANNNNNTGG	2 cut(s)	771, 906
PkrI	GCNGC	5 cut(s)	12, 617, 855, 981, 984
PleI	GAGTC	2 cut(s)	109, 1341
PpsI	GAGTC	2 cut(s)	109, 1341
PscI	ACATGT	1 cut(s)	1322
Psp124BI	GAGCTC	1 cut(s)	194
Psp6I	CCWGG	1 cut(s)	1087
PspGI	CCWGG	1 cut(s)	1087
PspN4I	GGNNCC	1 cut(s)	57
PsrI	GAACNNNNNNTAC	2 cut(s)	48, 80
PstNI	CAGNNNCTG	2 cut(s)	1162, 1333
PvuII	CAGCTG	1 cut(s)	1137
RsaI	GTAC	5 cut(s)	267, 809, 1013, 1024, 1244
RsaNI	GTAC	5 cut(s)	266, 808, 1012, 1023, 1243
RseI	CAYNNNNRTG	1 cut(s)	923
SacI	GAGCTC	1 cut(s)	194
SaqAI	TTAA	2 cut(s)	502, 866
SatI	GCNGC	5 cut(s)	11, 616, 854, 980, 983
Sau3AI	GATC	6 cut(s)	34, 174, 426, 687, 749, 1301
ScaI	AGTACT	2 cut(s)	267, 1244
SchI	GAGTC	2 cut(s)	109, 1341
ScrFI	CCNGG	1 cut(s)	1089
SduI	GDGCHC	2 cut(s)	194, 1077
SfaNI	GCATC	3 cut(s)	879, 900, 1232
SfcI	CTRYAG	2 cut(s)	433, 694
SmiMI	CAYNNNNRTG	1 cut(s)	923
Sse9I	AATT	3 cut(s)	355, 452, 1034
SsiI	CCGC	6 cut(s)	10, 23, 180, 305, 536, 983
SspMI	CTAG	4 cut(s)	227, 620, 1298, 1376
SstI	GAGCTC	1 cut(s)	194
StyD4I	CCNGG	1 cut(s)	1087
TaaI	ACNGT	3 cut(s)	698, 1046, 1211
TaiI	ACGT	1 cut(s)	1200
TaqI	TCGA	4 cut(s)	352, 497, 822, 1214
TasI	AATT	3 cut(s)	355, 452, 1034
TatI	WGTACW	4 cut(s)	265, 807, 1011, 1242
TauI	GCSGC	2 cut(s)	13, 985
TfiI	GAWTC	5 cut(s)	88, 243, 520, 565, 776
Tru1I	TTAA	2 cut(s)	502, 866
Tru9I	TTAA	2 cut(s)	502, 866
TscAI	CASTG	3 cut(s)	398, 880, 1051
TseI	GCWGC	3 cut(s)	615, 853, 979
TspDTI	ATGAA	4 cut(s)	376, 398, 557, 1013
TspRI	CASTG	3 cut(s)	398, 880, 1051
Van91I	CCANNNNNTGG	2 cut(s)	771, 906
XbaI	TCTAGA	2 cut(s)	226, 1375
XceI	RCATGY	3 cut(s)	186, 346, 1326
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1067, 1182
XmnI	GAANNNNTTC	2 cut(s)	98, 1210
XspI	CTAG	4 cut(s)	227, 620, 1298, 1376
ZrmI	AGTACT	2 cut(s)	267, 1244
Zsp2I	ATGCAT	1 cut(s)	954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.