Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0015218

Physical Location & Seq

Genomic Coordinates Reverse (-)

9236728 .. 9238983

Gene Structure 2256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00168340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGAGCTCTATCCCCAAACAGCCTTTGTTCTGCCTAAAATGGCCATGGGACATGAACCAGACTCCTCAGACTAATTCTCCTAGTGTTTGCTCCTTTGAGGGCCCTTGGCTTTTCAAATCTATGCAAAGTCTTGGGTCCGTTGCGTTCAATTTTGTCCAGTCAGTTTCCAAGTCACCGTCTAAGCCCTTGCAGTTTGATGCAAGAACCAACCAAAGTAAGAGTCTGAGTCCTGAAGAGCAGGCGGAGGCAGAGCATAGAGCATTCGCCTCCGCATTGGCAAGCAATAAAGAGGCTACAATGCTTGAGTTTTACTCGCCCAAATGCAGGCTGTGCAGTTCTTTACTTAATTCTGTGGTGGAGGTTGAGCGTAGGAACTCAGACTGGCTTAACATTGTTATGGCAGATGCAGAGAATGACAAATGGCTGCCCGAGCTCCTTCATTACGACATTAGATATGTACCTTGCTTTGTATTACTGGACAAGAAGGGGAGGGCACTGGCAAAGACTGGTATTCCAAATAGTCGACGCCATGTATTAGCAGGTCTCTCTCATCTTCTGAAGATGAAGTGTCCTAGCAAAAGAACAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0044424 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

196

Amino Acids

22.14

Weight (kDa)

9.18

Isoelectric Point (pI)

58.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	83 - 166	8.7e-08	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0015218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06430
fragaria_vesca	FvH4_2g40760 FvH4_2g40760
malus_domestica	MD15G1036100.v1.1
prunus_persica	Prupe.1G390300_v2.0.a1 Prupe.1G390300_v2.0.a1
pyrus_communis	pycom15g03360
rosa_chinensis	RchiOBHm_Chr6g0299831
rosa_laevigata	RLG00000011385
rosa_roxburghii	Rroxscaffold_7G00168340
rosa_rugosa	Rorug06G0292600
rosa_samantha	Rh6AG403700 Rh6BG412000 Rh6CG418100 Rh6DG404900
rosa_wichuraiana	Rw6G035320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	530
AccI	GTMKAC	1 cut(s)	523
AciI	CCGC	2 cut(s)	242, 270
AcoI	YGGCCR	1 cut(s)	41
AcuI	CTGAAG	2 cut(s)	252, 578
AcyI	GRCGYC	1 cut(s)	526
AfaI	GTAC	1 cut(s)	459
AfiI	CCNNNNNNNGG	1 cut(s)	324
AgsI	TTSAA	2 cut(s)	115, 148
AluBI	AGCT	3 cut(s)	6, 433, 588
AluI	AGCT	3 cut(s)	6, 433, 588
Alw21I	GWGCWC	2 cut(s)	8, 435
Alw26I	GTCTC	1 cut(s)	548
Ama87I	CYCGRG	1 cut(s)	428
AoxI	GGCC	2 cut(s)	41, 100
ApaI	GGGCCC	1 cut(s)	104
ApeKI	GCWGC	1 cut(s)	424
ArsI	GACNNNNNNTTYG	2 cut(s)	205, 237
AspS9I	GGNCC	3 cut(s)	100, 101, 135
AsuHPI	GGTGA	1 cut(s)	165
AvaI	CYCGRG	1 cut(s)	428
AvaII	GGWCC	1 cut(s)	135
BaeGI	GKGCMC	2 cut(s)	104, 496
BalI	TGGCCA	1 cut(s)	43
BanII	GRGCYC	3 cut(s)	8, 104, 435
Bbv12I	GWGCWC	2 cut(s)	8, 435
BbvI	GCAGC	1 cut(s)	411
BcoDI	GTCTC	1 cut(s)	548
BfaI	CTAG	2 cut(s)	81, 573
BfuAI	ACCTGC	1 cut(s)	530
BisI	GCNGC	1 cut(s)	425
BlsI	GCNGC	1 cut(s)	426
Bme18I	GGWCC	1 cut(s)	135
BmeT110I	CYCGRG	1 cut(s)	428
BmgT120I	GGNCC	3 cut(s)	100, 101, 135
BmiI	GGNNCC	2 cut(s)	102, 136
BmsI	GCATC	2 cut(s)	187, 394
BplI	GAGNNNNNCTC	2 cut(s)	296, 328
BpuEI	CTTGAG	1 cut(s)	323
BsaHI	GRCGYC	1 cut(s)	526
BsaI	GGTCTC	1 cut(s)	548
BsaJI	CCNNGG	2 cut(s)	44, 104
BsaXI	ACNNNNNCTCC	2 cut(s)	61, 91
Bsc4I	CCNNNNNNNGG	1 cut(s)	324
Bse1I	ACTGG	5 cut(s)	157, 386, 480, 501, 511
BseDI	CCNNGG	2 cut(s)	44, 104
BseLI	CCNNNNNNNGG	1 cut(s)	324
BseMII	CTCAG	3 cut(s)	80, 215, 390
BseNI	ACTGG	5 cut(s)	157, 386, 480, 501, 511
BseRI	GAGGAG	1 cut(s)	54
BseSI	GKGCMC	2 cut(s)	104, 496
BseXI	GCAGC	1 cut(s)	411
BsgI	GTGCAG	1 cut(s)	352
BshFI	GGCC	2 cut(s)	43, 102
BsiHKAI	GWGCWC	2 cut(s)	8, 435
BsiHKCI	CYCGRG	1 cut(s)	428
BslFI	GGGAC	1 cut(s)	62
BslI	CCNNNNNNNGG	1 cut(s)	324
BsmAI	GTCTC	1 cut(s)	548
BsmFI	GGGAC	1 cut(s)	62
BsmI	GAATGC	1 cut(s)	260
BsnI	GGCC	2 cut(s)	43, 102
Bso31I	GGTCTC	1 cut(s)	548
BsoBI	CYCGRG	1 cut(s)	428
Bsp120I	GGGCCC	1 cut(s)	100
Bsp1286I	GDGCHC	4 cut(s)	8, 104, 435, 496
Bsp19I	CCATGG	1 cut(s)	44
BspACI	CCGC	2 cut(s)	242, 270
BspANI	GGCC	2 cut(s)	43, 102
BspCNI	CTCAG	3 cut(s)	79, 216, 389
BspLI	GGNNCC	2 cut(s)	102, 136
BspMI	ACCTGC	1 cut(s)	530
BspQI	GCTCTTC	1 cut(s)	228
BspTNI	GGTCTC	1 cut(s)	548
BsrI	ACTGG	5 cut(s)	157, 386, 480, 501, 511
BssECI	CCNNGG	2 cut(s)	44, 104
BssNI	GRCGYC	1 cut(s)	526
BssT1I	CCWWGG	2 cut(s)	44, 104
Bst4CI	ACNGT	1 cut(s)	177
Bst6I	CTCTTC	1 cut(s)	228
BstACI	GRCGYC	1 cut(s)	526
BstAPI	GCANNNNNTGC	1 cut(s)	330
BstC8I	GCNNGC	3 cut(s)	240, 280, 326
BstDEI	CTNAG	4 cut(s)	66, 180, 224, 376
BstDSI	CCRYGG	1 cut(s)	44
BstMAI	GTCTC	1 cut(s)	548
BstMWI	GCNNNNNNNGC	2 cut(s)	330, 430
BstSLI	GKGCMC	2 cut(s)	104, 496
BstV1I	GCAGC	1 cut(s)	411
BsuRI	GGCC	2 cut(s)	43, 102
BtgI	CCRYGG	1 cut(s)	44
BtsIMutI	CAGTG	1 cut(s)	494
BveI	ACCTGC	1 cut(s)	530
Cac8I	GCNNGC	3 cut(s)	240, 280, 326
Cfr13I	GGNCC	3 cut(s)	100, 101, 135
CseI	GACGC	1 cut(s)	534
Csp6I	GTAC	1 cut(s)	458
CviAII	CATG	3 cut(s)	45, 52, 530
CviQI	GTAC	1 cut(s)	458
DdeI	CTNAG	4 cut(s)	66, 180, 224, 376
EaeI	YGGCCR	1 cut(s)	41
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
EciI	GGCGGA	1 cut(s)	257
Ecl136II	GAGCTC	2 cut(s)	6, 433
Eco130I	CCWWGG	2 cut(s)	44, 104
Eco24I	GRGCYC	3 cut(s)	8, 104, 435
Eco31I	GGTCTC	1 cut(s)	548
Eco47I	GGWCC	1 cut(s)	135
Eco53kI	GAGCTC	2 cut(s)	6, 433
Eco57I	CTGAAG	2 cut(s)	252, 578
Eco88I	CYCGRG	1 cut(s)	428
EcoICRI	GAGCTC	2 cut(s)	6, 433
EcoO109I	RGGNCCY	2 cut(s)	100, 101
EcoT14I	CCWWGG	2 cut(s)	44, 104
EcoT38I	GRGCYC	3 cut(s)	8, 104, 435
ErhI	CCWWGG	2 cut(s)	44, 104
FaeI	CATG	3 cut(s)	48, 55, 533
FaiI	YATR	7 cut(s)	46, 53, 122, 255, 398, 456, 531
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	3 cut(s)	44, 51, 529
FblI	GTMKAC	1 cut(s)	523
Fnu4HI	GCNGC	1 cut(s)	425
FriOI	GRGCYC	3 cut(s)	8, 104, 435
Fsp4HI	GCNGC	1 cut(s)	425
FspBI	CTAG	2 cut(s)	81, 573
GluI	GCNGC	1 cut(s)	425
HaeIII	GGCC	2 cut(s)	43, 102
HgaI	GACGC	1 cut(s)	534
Hin1I	GRCGYC	1 cut(s)	526
Hin1II	CATG	3 cut(s)	48, 55, 533
HincII	GTYRAC	1 cut(s)	524
HindII	GTYRAC	1 cut(s)	524
HinfI	GANTC	3 cut(s)	61, 220, 226
HphI	GGTGA	1 cut(s)	165
Hpy166II	GTNNAC	1 cut(s)	524
Hpy188I	TCNGA	4 cut(s)	69, 225, 379, 558
Hpy188III	TCNNGA	1 cut(s)	230
Hpy8I	GTNNAC	1 cut(s)	524
Hpy99I	CGWCG	1 cut(s)	528
HpyAV	CCTTC	2 cut(s)	446, 478
HpyCH4III	ACNGT	1 cut(s)	177
HpyCH4V	TGCA	6 cut(s)	124, 190, 200, 324, 333, 407
HpyF10VI	GCNNNNNNNGC	2 cut(s)	330, 430
HpyF3I	CTNAG	4 cut(s)	66, 180, 224, 376
Hsp92I	GRCGYC	1 cut(s)	526
Hsp92II	CATG	3 cut(s)	48, 55, 533
LguI	GCTCTTC	1 cut(s)	228
LmnI	GCTCC	2 cut(s)	95, 438
Lsp1109I	GCAGC	1 cut(s)	411
LweI	GCATC	2 cut(s)	187, 394
MaeI	CTAG	2 cut(s)	81, 573
MaeIII	GTNAC	1 cut(s)	171
MboII	GAAGA	3 cut(s)	245, 545, 571
MhlI	GDGCHC	4 cut(s)	8, 104, 435, 496
MlsI	TGGCCA	1 cut(s)	43
MluCI	AATT	3 cut(s)	73, 148, 346
MluNI	TGGCCA	1 cut(s)	43
MlyI	GAGTC	3 cut(s)	55, 229, 235
MnlI	CCTC	7 cut(s)	75, 91, 238, 277, 283, 352, 483
Mox20I	TGGCCA	1 cut(s)	43
MscI	TGGCCA	1 cut(s)	43
MseI	TTAA	2 cut(s)	345, 387
MslI	CAYNNNNRTG	1 cut(s)	395
Msp20I	TGGCCA	1 cut(s)	43
Mva1269I	GAATGC	1 cut(s)	260
MwoI	GCNNNNNNNGC	2 cut(s)	330, 430
NcoI	CCATGG	1 cut(s)	44
NlaIII	CATG	3 cut(s)	48, 55, 533
NlaIV	GGNNCC	2 cut(s)	102, 136
NmuCI	GTSAC	1 cut(s)	171
PciSI	GCTCTTC	1 cut(s)	228
PctI	GAATGC	1 cut(s)	260
PkrI	GCNGC	1 cut(s)	426
PleI	GAGTC	3 cut(s)	55, 228, 234
PpsI	GAGTC	3 cut(s)	55, 228, 234
Psp124BI	GAGCTC	2 cut(s)	8, 435
PspN4I	GGNNCC	2 cut(s)	102, 136
PspOMI	GGGCCC	1 cut(s)	100
PspPI	GGNCC	3 cut(s)	100, 101, 135
RsaI	GTAC	1 cut(s)	459
RsaNI	GTAC	1 cut(s)	458
RseI	CAYNNNNRTG	1 cut(s)	395
SacI	GAGCTC	2 cut(s)	8, 435
SalI	GTCGAC	1 cut(s)	522
SapI	GCTCTTC	1 cut(s)	228
SaqAI	TTAA	2 cut(s)	345, 387
SatI	GCNGC	1 cut(s)	425
Sau96I	GGNCC	3 cut(s)	100, 101, 135
SchI	GAGTC	3 cut(s)	55, 229, 235
SduI	GDGCHC	4 cut(s)	8, 104, 435, 496
SetI	ASST	6 cut(s)	8, 363, 435, 463, 544, 590
SfaNI	GCATC	2 cut(s)	187, 394
SinI	GGWCC	1 cut(s)	135
SmiMI	CAYNNNNRTG	1 cut(s)	395
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
Sse9I	AATT	3 cut(s)	73, 148, 346
SsiI	CCGC	2 cut(s)	242, 270
SspMI	CTAG	2 cut(s)	81, 573
SstI	GAGCTC	2 cut(s)	8, 435
StyI	CCWWGG	2 cut(s)	44, 104
TaaI	ACNGT	1 cut(s)	177
TaqI	TCGA	1 cut(s)	523
TasI	AATT	3 cut(s)	73, 148, 346
Tru1I	TTAA	2 cut(s)	345, 387
Tru9I	TTAA	2 cut(s)	345, 387
TscAI	CASTG	1 cut(s)	501
TseFI	GTSAC	1 cut(s)	171
TseI	GCWGC	1 cut(s)	424
Tsp45I	GTSAC	1 cut(s)	171
TspDTI	ATGAA	3 cut(s)	68, 428, 578
TspGWI	ACGGA	1 cut(s)	127
TspRI	CASTG	1 cut(s)	501
VpaK11BI	GGWCC	1 cut(s)	135
XmiI	GTMKAC	1 cut(s)	523
XspI	CTAG	2 cut(s)	81, 573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.