FvH4_3g01090

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0013927
Physical Location & Seq
Forward (+)
548044 .. 550527
2484 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g01090.t1

Sequence Viewer

Length: 579 bp
ATGGAGGGAGTCGGGGCCCGAACGGGTCGAACCTCGACCCGGTACGGACCGGCCACGGTGTTCAATGGCCCGGTCAGGAAGTGGAAGAAGAAGTGGGTCCACGTAGCTCCTCCTTCTCACACCTCTCACTCTCACTCTCACTCCCACCAGATTAACACCCCTAACGGAAATAACGGCTCCCACCTCCTTCTCTTCAAGTGGGCCCCGATCTCCCAGACCCAAAATGCTGTCGCCAATGGCACCGCCGCTAAGCCCGACGATGTGGAGGAGCCGCCTCGCCGCAGATTCAAGTACATGCCGATTGCTTTATTAGAGGAACAGCTAAATGAGGCTGCAGAACAGGTTGAAGAAGAGGTCAACCTGGTAGATACTGAGCCAGCTGAAACAGAGGCAACCACCAAGGGCGAGGGTTTAGATGAAAAACCTGACATTAATGATGTCCCTATGGAAGAAAATCAGGACAATAATCAGGTAGTATGTCAAGATCTGAATGAAAGCACTTTGGATTTAAGTTTGGGCTTAAATGGACATGACAGTGATGATGGTTCTGCTATGAAAACTGATCAAACCAGAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

21.19

Weight (kDa)

5.05

Isoelectric Point (pI)

31.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013927)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G22320 AT4G22320
fragaria_vesca FvH4_3g01090
malus_domestica MD05G1356800.v1.1 MD10G1329900.v1.1
prunus_persica Prupe.4G012100_v2.0.a1
pyrus_communis pycom05g32280
rosa_chinensis RchiOBHm_Chr5g0001661
rosa_laevigata RLG00000030952
rosa_multiflora Rmu_ssc0000237.1_g000027
rosa_roxburghii Rroxscaffold_1G00074670
rosa_rugosa Rorug04G0391600
rosa_samantha Rh5AG013100 Rh5BG016400 Rh5CG014100 Rh5DG014200
rosa_wichuraiana Rw5G001260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 239
AciI CCGC 4 cut(s) 243, 246, 272, 280
AcoI YGGCCR 1 cut(s) 51
AfaI GTAC 2 cut(s) 44, 293
AfiI CCNNNNNNNGG 1 cut(s) 39
AgsI TTSAA 4 cut(s) 64, 196, 289, 347
AjnI CCWGG 1 cut(s) 360
AluBI AGCT 3 cut(s) 107, 322, 380
AluI AGCT 3 cut(s) 107, 322, 380
AoxI GGCC 4 cut(s) 15, 51, 67, 201
ApaI GGGCCC 2 cut(s) 19, 205
ApeKI GCWGC 1 cut(s) 332
AseI ATTAAT 1 cut(s) 432
AspS9I GGNCC 7 cut(s) 15, 16, 47, 68, 97, 201, 202
AsuC2I CCSGG 2 cut(s) 40, 71
AvaII GGWCC 2 cut(s) 47, 97
BaeGI GKGCMC 2 cut(s) 19, 205
BanI GGYRCC 1 cut(s) 239
BanII GRGCYC 2 cut(s) 19, 205
BbvI GCAGC 1 cut(s) 319
BccI CCATC 1 cut(s) 536
BceAI ACGGC 1 cut(s) 190
BciT130I CCWGG 1 cut(s) 362
BclI TGATCA 1 cut(s) 562
BcnI CCSGG 2 cut(s) 40, 71
BfmI CTRYAG 1 cut(s) 333
BglII AGATCT 1 cut(s) 484
BisI GCNGC 4 cut(s) 246, 272, 280, 333
BlpI GCTNAGC 1 cut(s) 249
BlsI GCNGC 4 cut(s) 247, 273, 281, 334
Bme1390I CCNGG 3 cut(s) 40, 71, 362
Bme18I GGWCC 2 cut(s) 47, 97
BmgT120I GGNCC 7 cut(s) 15, 16, 47, 68, 97, 201, 202
BmiI GGNNCC 8 cut(s) 16, 17, 98, 178, 203, 204, 241, 270
BmrFI CCNGG 3 cut(s) 40, 71, 362
Bpu1102I GCTNAGC 1 cut(s) 249
BpuMI CCSGG 2 cut(s) 40, 71
BsaAI YACGTR 1 cut(s) 103
BsaJI CCNNGG 2 cut(s) 54, 399
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bsc4I CCNNNNNNNGG 1 cut(s) 39
Bse118I RCCGGY 1 cut(s) 49
BseBI CCWGG 1 cut(s) 362
BseDI CCNNGG 2 cut(s) 54, 399
BseLI CCNNNNNNNGG 1 cut(s) 39
BseMII CTCAG 1 cut(s) 363
BseRI GAGGAG 2 cut(s) 99, 281
BseSI GKGCMC 2 cut(s) 19, 205
BseXI GCAGC 1 cut(s) 319
BshFI GGCC 4 cut(s) 17, 53, 69, 203
BshNI GGYRCC 1 cut(s) 239
BsiSI CCGG 3 cut(s) 40, 50, 71
BslFI GGGAC 1 cut(s) 425
BslI CCNNNNNNNGG 1 cut(s) 39
BsmFI GGGAC 1 cut(s) 425
BsnI GGCC 4 cut(s) 17, 53, 69, 203
Bsp120I GGGCCC 2 cut(s) 15, 201
Bsp1286I GDGCHC 2 cut(s) 19, 205
Bsp143I GATC 3 cut(s) 207, 484, 562
Bsp1720I GCTNAGC 1 cut(s) 249
BspACI CCGC 4 cut(s) 243, 246, 272, 280
BspANI GGCC 4 cut(s) 17, 53, 69, 203
BspCNI CTCAG 1 cut(s) 364
BspLI GGNNCC 8 cut(s) 16, 17, 98, 178, 203, 204, 241, 270
BspMAI CTGCAG 1 cut(s) 337
BspT107I GGYRCC 1 cut(s) 239
BsrFI RCCGGY 1 cut(s) 49
BssAI RCCGGY 1 cut(s) 49
BssECI CCNNGG 2 cut(s) 54, 399
BssMI GATC 3 cut(s) 207, 484, 562
BssT1I CCWWGG 1 cut(s) 399
Bst2UI CCWGG 1 cut(s) 362
Bst4CI ACNGT 2 cut(s) 58, 536
Bst6I CTCTTC 2 cut(s) 197, 345
BstBAI YACGTR 1 cut(s) 103
BstC8I GCNNGC 1 cut(s) 378
BstDEI CTNAG 2 cut(s) 249, 372
BstDSI CCRYGG 1 cut(s) 54
BstKTI GATC 3 cut(s) 210, 487, 565
BstMBI GATC 3 cut(s) 207, 484, 562
BstNI CCWGG 1 cut(s) 362
BstNSI RCATGY 1 cut(s) 298
BstSCI CCNGG 3 cut(s) 38, 69, 360
BstSFI CTRYAG 1 cut(s) 333
BstSLI GKGCMC 2 cut(s) 19, 205
BstV1I GCAGC 1 cut(s) 319
BstX2I RGATCY 1 cut(s) 484
BstYI RGATCY 1 cut(s) 484
BsuRI GGCC 4 cut(s) 17, 53, 69, 203
BtgI CCRYGG 1 cut(s) 54
BtsIMutI CAGTG 1 cut(s) 541
Cac8I GCNNGC 1 cut(s) 378
Cfr10I RCCGGY 1 cut(s) 49
Cfr13I GGNCC 7 cut(s) 15, 16, 47, 68, 97, 201, 202
CpoI CGGWCCG 1 cut(s) 47
CsiI ACCWGGT 1 cut(s) 360
Csp6I GTAC 2 cut(s) 43, 292
CspI CGGWCCG 1 cut(s) 47
CviAII CATG 2 cut(s) 295, 530
CviQI GTAC 2 cut(s) 43, 292
DdeI CTNAG 2 cut(s) 249, 372
DpnI GATC 3 cut(s) 209, 486, 564
DpnII GATC 3 cut(s) 207, 484, 562
EaeI YGGCCR 1 cut(s) 51
Eam1104I CTCTTC 2 cut(s) 197, 345
EarI CTCTTC 2 cut(s) 197, 345
Eco130I CCWWGG 1 cut(s) 399
Eco24I GRGCYC 2 cut(s) 19, 205
Eco47I GGWCC 2 cut(s) 47, 97
EcoO109I RGGNCCY 2 cut(s) 15, 202
EcoRII CCWGG 1 cut(s) 360
EcoT14I CCWWGG 1 cut(s) 399
EcoT38I GRGCYC 2 cut(s) 19, 205
ErhI CCWWGG 1 cut(s) 399
FaeI CATG 2 cut(s) 298, 533
FaiI YATR 5 cut(s) 296, 446, 478, 531, 554
FaqI GGGAC 1 cut(s) 425
FatI CATG 2 cut(s) 294, 529
FbaI TGATCA 1 cut(s) 562
Fnu4HI GCNGC 4 cut(s) 246, 272, 280, 333
FriOI GRGCYC 2 cut(s) 19, 205
Fsp4HI GCNGC 4 cut(s) 246, 272, 280, 333
GluI GCNGC 4 cut(s) 246, 272, 280, 333
HaeIII GGCC 4 cut(s) 17, 53, 69, 203
HapII CCGG 3 cut(s) 40, 50, 71
Hin1II CATG 2 cut(s) 298, 533
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HinfI GANTC 2 cut(s) 9, 285
HpaII CCGG 3 cut(s) 40, 50, 71
Hpy166II GTNNAC 2 cut(s) 100, 358
Hpy188I TCNGA 1 cut(s) 489
Hpy188III TCNNGA 3 cut(s) 76, 458, 482
Hpy8I GTNNAC 2 cut(s) 100, 358
Hpy99I CGWCG 1 cut(s) 260
HpyAV CCTTC 2 cut(s) 123, 197
HpyCH4III ACNGT 2 cut(s) 58, 536
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 1 cut(s) 335
HpyF3I CTNAG 2 cut(s) 249, 372
HpySE526I ACGT 1 cut(s) 102
Hsp92II CATG 2 cut(s) 298, 533
Ksp22I TGATCA 1 cut(s) 562
Kzo9I GATC 3 cut(s) 207, 484, 562
LmnI GCTCC 3 cut(s) 112, 182, 268
Lsp1109I GCAGC 1 cut(s) 319
MabI ACCWGGT 1 cut(s) 360
MaeII ACGT 1 cut(s) 102
MalI GATC 3 cut(s) 209, 486, 564
MboI GATC 3 cut(s) 207, 484, 562
MboII GAAGA 6 cut(s) 97, 100, 184, 359, 362, 461
MflI RGATCY 1 cut(s) 484
MhlI GDGCHC 2 cut(s) 19, 205
MlyI GAGTC 1 cut(s) 18
MseI TTAA 4 cut(s) 153, 432, 509, 521
MslI CAYNNNNRTG 1 cut(s) 534
MspA1I CMGCKG 1 cut(s) 380
MspI CCGG 3 cut(s) 40, 50, 71
MspR9I CCNGG 3 cut(s) 40, 71, 362
MvaI CCWGG 1 cut(s) 362
NciI CCSGG 2 cut(s) 40, 71
NdeII GATC 3 cut(s) 207, 484, 562
NlaIII CATG 2 cut(s) 298, 533
NlaIV GGNNCC 8 cut(s) 16, 17, 98, 178, 203, 204, 241, 270
NspI RCATGY 1 cut(s) 298
PfeI GAWTC 1 cut(s) 285
PkrI GCNGC 4 cut(s) 247, 273, 281, 334
PleI GAGTC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 17
Ppu21I YACGTR 1 cut(s) 103
PshBI ATTAAT 1 cut(s) 432
Psp6I CCWGG 1 cut(s) 360
PspGI CCWGG 1 cut(s) 360
PspN4I GGNNCC 8 cut(s) 16, 17, 98, 178, 203, 204, 241, 270
PspOMI GGGCCC 2 cut(s) 15, 201
PspPI GGNCC 7 cut(s) 15, 16, 47, 68, 97, 201, 202
PstI CTGCAG 1 cut(s) 337
PsuI RGATCY 1 cut(s) 484
PvuII CAGCTG 1 cut(s) 380
RsaI GTAC 2 cut(s) 44, 293
RsaNI GTAC 2 cut(s) 43, 292
RseI CAYNNNNRTG 1 cut(s) 534
Rsr2I CGGWCCG 1 cut(s) 47
RsrII CGGWCCG 1 cut(s) 47
SaqAI TTAA 4 cut(s) 153, 432, 509, 521
SatI GCNGC 4 cut(s) 246, 272, 280, 333
Sau3AI GATC 3 cut(s) 207, 484, 562
Sau96I GGNCC 7 cut(s) 15, 16, 47, 68, 97, 201, 202
SchI GAGTC 1 cut(s) 18
ScrFI CCNGG 3 cut(s) 40, 71, 362
SduI GDGCHC 2 cut(s) 19, 205
SexAI ACCWGGT 1 cut(s) 360
SfcI CTRYAG 1 cut(s) 333
SinI GGWCC 2 cut(s) 47, 97
SmiMI CAYNNNNRTG 1 cut(s) 534
SsiI CCGC 4 cut(s) 243, 246, 272, 280
StyD4I CCNGG 3 cut(s) 38, 69, 360
StyI CCWWGG 1 cut(s) 399
TaaI ACNGT 2 cut(s) 58, 536
TaiI ACGT 1 cut(s) 105
TaqI TCGA 2 cut(s) 28, 35
TatI WGTACW 1 cut(s) 291
TauI GCSGC 3 cut(s) 248, 274, 282
TfiI GAWTC 1 cut(s) 285
Tru1I TTAA 4 cut(s) 153, 432, 509, 521
Tru9I TTAA 4 cut(s) 153, 432, 509, 521
TscAI CASTG 1 cut(s) 541
TseI GCWGC 1 cut(s) 332
TspDTI ATGAA 3 cut(s) 432, 507, 569
TspGWI ACGGA 2 cut(s) 60, 180
TspRI CASTG 1 cut(s) 541
VpaK11BI GGWCC 2 cut(s) 47, 97
VspI ATTAAT 1 cut(s) 432
XceI RCATGY 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.