Prupe.4G012100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0013927
Physical Location & Seq
Forward (+)
580439 .. 583743
3305 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G012100.1

Sequence Viewer

Length: 654 bp
ATGGAGGGAGTTGGGGCCCGACTCGGGCGGTCCTCGACCCGGTACGGACCAGCCACGGTGTTCACTGGGCCGGTGAGGAAGTGGAAGAAGAAGTGGGTCCACGTAGCACCATCCTCTAACACCAACAACGCTAGTTCTACCACCCATCACTCTCATCAGATTAACGGCCACAACGGTGCCTCTAACGGTAATAACGGCTCGCATCTCTTGCTTTACAAGTGGACCCCAATTACCCAAAGCCAAAACACAGCCATTAGCAACAATAATAACGCAGTCACCAATGGCAATGGGGGGGACAAGGTTTCTGCAAAGGACGACGATGCATTGGCGGCTAACGAGGAGCCGCCTCGCCGAAAATTTAAATACATTCCGATTGCTTTACTGGAAGAACAGCAACTTGAGGCTGCAGAACAGGTTGAAGATGAATCTAACTCTATTGATAATGAGCCAACTGAAACAGAGGCCACTCCCAAGAATGAGGTTTTAGATGAGAAACCTGACATTAATGACGTTCCTATGGAAGAAAATGAGGACAATAATCAGGTAGTATGCCAAGATCTGAATGAAAGCACTTTGGATTTAAGTTTGGGCTTGAATGCGCATGAAAGTGATAATGGTTCTGCTTTAAATACTGAACAAACCAGAAATGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

218

Amino Acids

23.61

Weight (kDa)

4.78

Isoelectric Point (pI)

27.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013927)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G22320 AT4G22320
fragaria_vesca FvH4_3g01090
malus_domestica MD05G1356800.v1.1 MD10G1329900.v1.1
prunus_persica Prupe.4G012100_v2.0.a1
pyrus_communis pycom05g32280
rosa_chinensis RchiOBHm_Chr5g0001661
rosa_laevigata RLG00000030952
rosa_multiflora Rmu_ssc0000237.1_g000027
rosa_roxburghii Rroxscaffold_1G00074670
rosa_rugosa Rorug04G0391600
rosa_samantha Rh5AG013100 Rh5BG016400 Rh5CG014100 Rh5DG014200
rosa_wichuraiana Rw5G001260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 600
AccB1I GGYRCC 1 cut(s) 176
AciI CCGC 3 cut(s) 28, 329, 344
AcoI YGGCCR 1 cut(s) 166
AcsI RAATTY 1 cut(s) 356
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 2 cut(s) 24, 39
AgsI TTSAA 2 cut(s) 419, 595
AleI CACNNNNGTG 1 cut(s) 174
Ama87I CYCGRG 1 cut(s) 23
AoxI GGCC 4 cut(s) 15, 68, 166, 462
ApaI GGGCCC 1 cut(s) 19
ApeKI GCWGC 1 cut(s) 404
ApoI RAATTY 1 cut(s) 356
AseI ATTAAT 1 cut(s) 504
AspLEI GCGC 1 cut(s) 601
AspS9I GGNCC 7 cut(s) 15, 16, 30, 47, 68, 97, 222
AsuC2I CCSGG 1 cut(s) 40
AsuHPI GGTGA 2 cut(s) 85, 268
AvaI CYCGRG 1 cut(s) 23
AvaII GGWCC 4 cut(s) 30, 47, 97, 222
BaeGI GKGCMC 1 cut(s) 19
BanI GGYRCC 1 cut(s) 176
BanII GRGCYC 1 cut(s) 19
BbvI GCAGC 1 cut(s) 391
BccI CCATC 2 cut(s) 118, 153
BceAI ACGGC 2 cut(s) 181, 211
BcnI CCSGG 1 cut(s) 40
BfaI CTAG 1 cut(s) 132
BfmI CTRYAG 1 cut(s) 405
BglII AGATCT 1 cut(s) 556
BisI GCNGC 3 cut(s) 330, 344, 405
BlsI GCNGC 3 cut(s) 331, 345, 406
Bme1390I CCNGG 1 cut(s) 40
Bme18I GGWCC 4 cut(s) 30, 47, 97, 222
BmeT110I CYCGRG 1 cut(s) 23
BmgT120I GGNCC 7 cut(s) 15, 16, 30, 47, 68, 97, 222
BmiI GGNNCC 6 cut(s) 16, 17, 98, 178, 224, 342
BmrFI CCNGG 1 cut(s) 40
BmrI ACTGGG 1 cut(s) 75
BmsI GCATC 2 cut(s) 211, 310
BmuI ACTGGG 1 cut(s) 75
BpuEI CTTGAG 1 cut(s) 419
BpuMI CCSGG 1 cut(s) 40
BsaAI YACGTR 1 cut(s) 103
BsaJI CCNNGG 1 cut(s) 54
Bsc4I CCNNNNNNNGG 2 cut(s) 24, 39
Bse118I RCCGGY 1 cut(s) 70
Bse1I ACTGG 2 cut(s) 70, 387
Bse3DI GCAATG 1 cut(s) 292
BseDI CCNNGG 1 cut(s) 54
BseGI GGATG 1 cut(s) 110
BseLI CCNNNNNNNGG 2 cut(s) 24, 39
BseMI GCAATG 1 cut(s) 292
BseNI ACTGG 2 cut(s) 70, 387
BseRI GAGGAG 1 cut(s) 353
BseSI GKGCMC 1 cut(s) 19
BseXI GCAGC 1 cut(s) 391
BshFI GGCC 4 cut(s) 17, 70, 168, 464
BshNI GGYRCC 1 cut(s) 176
BsiHKCI CYCGRG 1 cut(s) 23
BsiSI CCGG 2 cut(s) 40, 71
BslFI GGGAC 1 cut(s) 308
BslI CCNNNNNNNGG 2 cut(s) 24, 39
BsmFI GGGAC 1 cut(s) 308
BsmI GAATGC 1 cut(s) 601
BsnI GGCC 4 cut(s) 17, 70, 168, 464
BsoBI CYCGRG 1 cut(s) 23
Bsp120I GGGCCC 1 cut(s) 15
Bsp1286I GDGCHC 1 cut(s) 19
Bsp143I GATC 1 cut(s) 556
BspACI CCGC 3 cut(s) 28, 329, 344
BspANI GGCC 4 cut(s) 17, 70, 168, 464
BspLI GGNNCC 6 cut(s) 16, 17, 98, 178, 224, 342
BspMAI CTGCAG 1 cut(s) 409
BspT107I GGYRCC 1 cut(s) 176
BsrDI GCAATG 1 cut(s) 292
BsrFI RCCGGY 1 cut(s) 70
BsrI ACTGG 2 cut(s) 70, 387
BssAI RCCGGY 1 cut(s) 70
BssECI CCNNGG 1 cut(s) 54
BssMI GATC 1 cut(s) 556
Bst4CI ACNGT 3 cut(s) 58, 176, 188
BstAPI GCANNNNNTGC 1 cut(s) 208
BstBAI YACGTR 1 cut(s) 103
BstC8I GCNNGC 1 cut(s) 200
BstDSI CCRYGG 1 cut(s) 54
BstF5I GGATG 1 cut(s) 110
BstHHI GCGC 1 cut(s) 601
BstKTI GATC 1 cut(s) 559
BstMBI GATC 1 cut(s) 556
BstMWI GCNNNNNNNGC 2 cut(s) 208, 329
BstSCI CCNGG 1 cut(s) 38
BstSFI CTRYAG 1 cut(s) 405
BstSLI GKGCMC 1 cut(s) 19
BstV1I GCAGC 1 cut(s) 391
BstX2I RGATCY 1 cut(s) 556
BstYI RGATCY 1 cut(s) 556
BsuRI GGCC 4 cut(s) 17, 70, 168, 464
BtgI CCRYGG 1 cut(s) 54
BtsCI GGATG 1 cut(s) 110
BtsIMutI CAGTG 1 cut(s) 63
Cac8I GCNNGC 1 cut(s) 200
CfoI GCGC 1 cut(s) 601
Cfr10I RCCGGY 1 cut(s) 70
Cfr13I GGNCC 7 cut(s) 15, 16, 30, 47, 68, 97, 222
Csp6I GTAC 1 cut(s) 43
CviAII CATG 1 cut(s) 602
CviQI GTAC 1 cut(s) 43
DpnI GATC 1 cut(s) 558
DpnII GATC 1 cut(s) 556
DraI TTTAAA 2 cut(s) 361, 627
EaeI YGGCCR 1 cut(s) 166
Eco24I GRGCYC 1 cut(s) 19
Eco47I GGWCC 4 cut(s) 30, 47, 97, 222
Eco88I CYCGRG 1 cut(s) 23
EcoO109I RGGNCCY 1 cut(s) 15
EcoT22I ATGCAT 1 cut(s) 325
EcoT38I GRGCYC 1 cut(s) 19
FaeI CATG 1 cut(s) 605
FaiI YATR 3 cut(s) 518, 550, 603
FaqI GGGAC 1 cut(s) 308
FatI CATG 1 cut(s) 601
Fnu4HI GCNGC 3 cut(s) 330, 344, 405
FokI GGATG 1 cut(s) 97
FriOI GRGCYC 1 cut(s) 19
Fsp4HI GCNGC 3 cut(s) 330, 344, 405
FspAI RTGCGCAY 1 cut(s) 600
FspBI CTAG 1 cut(s) 132
FspI TGCGCA 1 cut(s) 600
GlaI GCGC 1 cut(s) 600
GluI GCNGC 3 cut(s) 330, 344, 405
HaeIII GGCC 4 cut(s) 17, 70, 168, 464
HapII CCGG 2 cut(s) 40, 71
HhaI GCGC 1 cut(s) 601
Hin1II CATG 1 cut(s) 605
Hin6I GCGC 1 cut(s) 599
HinP1I GCGC 1 cut(s) 599
HinfI GANTC 2 cut(s) 21, 425
HpaII CCGG 2 cut(s) 40, 71
HphI GGTGA 2 cut(s) 85, 268
Hpy166II GTNNAC 3 cut(s) 63, 100, 222
Hpy188I TCNGA 3 cut(s) 159, 372, 561
Hpy8I GTNNAC 3 cut(s) 63, 100, 222
Hpy99I CGWCG 1 cut(s) 320
HpyCH4III ACNGT 3 cut(s) 58, 176, 188
HpyCH4IV ACGT 2 cut(s) 102, 510
HpyCH4V TGCA 3 cut(s) 308, 323, 407
HpyF10VI GCNNNNNNNGC 2 cut(s) 208, 329
HpySE526I ACGT 2 cut(s) 102, 510
Hsp92II CATG 1 cut(s) 605
HspAI GCGC 1 cut(s) 599
Kzo9I GATC 1 cut(s) 556
LmnI GCTCC 1 cut(s) 340
LpnPI CCDG 8 cut(s) 51, 53, 63, 84, 368, 398, 510, 527
Lsp1109I GCAGC 1 cut(s) 391
LweI GCATC 2 cut(s) 211, 310
MaeI CTAG 1 cut(s) 132
MaeII ACGT 2 cut(s) 102, 510
MaeIII GTNAC 1 cut(s) 274
MalI GATC 1 cut(s) 558
MboI GATC 1 cut(s) 556
MboII GAAGA 5 cut(s) 97, 100, 398, 431, 533
MflI RGATCY 1 cut(s) 556
MhlI GDGCHC 1 cut(s) 19
MluCI AATT 2 cut(s) 228, 356
MlyI GAGTC 1 cut(s) 15
Mph1103I ATGCAT 1 cut(s) 325
MseI TTAA 5 cut(s) 162, 360, 504, 581, 626
MslI CAYNNNNRTG 2 cut(s) 174, 606
MspI CCGG 2 cut(s) 40, 71
MspR9I CCNGG 1 cut(s) 40
Mva1269I GAATGC 1 cut(s) 601
MwoI GCNNNNNNNGC 2 cut(s) 208, 329
NciI CCSGG 1 cut(s) 40
NdeII GATC 1 cut(s) 556
NlaIII CATG 1 cut(s) 605
NlaIV GGNNCC 6 cut(s) 16, 17, 98, 178, 224, 342
NmuCI GTSAC 1 cut(s) 274
NsbI TGCGCA 1 cut(s) 600
NsiI ATGCAT 1 cut(s) 325
OliI CACNNNNGTG 1 cut(s) 174
PctI GAATGC 1 cut(s) 601
PfeI GAWTC 1 cut(s) 425
PkrI GCNGC 3 cut(s) 331, 345, 406
PleI GAGTC 1 cut(s) 15
PpsI GAGTC 1 cut(s) 15
Ppu21I YACGTR 1 cut(s) 103
PshBI ATTAAT 1 cut(s) 504
PspN4I GGNNCC 6 cut(s) 16, 17, 98, 178, 224, 342
PspOMI GGGCCC 1 cut(s) 15
PspPI GGNCC 7 cut(s) 15, 16, 30, 47, 68, 97, 222
PstI CTGCAG 1 cut(s) 409
PsuI RGATCY 1 cut(s) 556
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
RseI CAYNNNNRTG 2 cut(s) 174, 606
SaqAI TTAA 5 cut(s) 162, 360, 504, 581, 626
SatI GCNGC 3 cut(s) 330, 344, 405
Sau3AI GATC 1 cut(s) 556
Sau96I GGNCC 7 cut(s) 15, 16, 30, 47, 68, 97, 222
SchI GAGTC 1 cut(s) 15
ScrFI CCNGG 1 cut(s) 40
SduI GDGCHC 1 cut(s) 19
SetI ASST 7 cut(s) 105, 303, 417, 483, 499, 513, 546
SfaNI GCATC 2 cut(s) 211, 310
SfcI CTRYAG 1 cut(s) 405
SinI GGWCC 4 cut(s) 30, 47, 97, 222
SmiI ATTTAAAT 1 cut(s) 361
SmiMI CAYNNNNRTG 2 cut(s) 174, 606
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
Sse9I AATT 2 cut(s) 228, 356
SsiI CCGC 3 cut(s) 28, 329, 344
SspMI CTAG 1 cut(s) 132
StyD4I CCNGG 1 cut(s) 38
SwaI ATTTAAAT 1 cut(s) 361
TaaI ACNGT 3 cut(s) 58, 176, 188
TaiI ACGT 2 cut(s) 105, 513
TaqI TCGA 1 cut(s) 35
TasI AATT 2 cut(s) 228, 356
TauI GCSGC 2 cut(s) 332, 346
TfiI GAWTC 1 cut(s) 425
Tru1I TTAA 5 cut(s) 162, 360, 504, 581, 626
Tru9I TTAA 5 cut(s) 162, 360, 504, 581, 626
TscAI CASTG 1 cut(s) 70
TseFI GTSAC 1 cut(s) 274
TseI GCWGC 1 cut(s) 404
Tsp45I GTSAC 1 cut(s) 274
TspDTI ATGAA 3 cut(s) 438, 579, 618
TspGWI ACGGA 1 cut(s) 60
TspRI CASTG 1 cut(s) 70
VpaK11BI GGWCC 4 cut(s) 30, 47, 97, 222
VspI ATTAAT 1 cut(s) 504
XapI RAATTY 1 cut(s) 356
XspI CTAG 1 cut(s) 132
Zsp2I ATGCAT 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.