Rh5AG013100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0013927
Physical Location & Seq
Forward (+)
865968 .. 868244
2277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG013100.1

Sequence Viewer

Length: 405 bp
ATGGAGGGAGTTGGGGCCCGAACGGGTCGAACCTCGACCCGCTACGGACCAGCCACGGTGTTCAATGGCCCGGTCAGGAAGTGGAAGAAGAAGTGGGTCCACGTAGCTCCTCCTCCTCATCACACCTCTCACTCCCATCAGATTAACGCCCACAACCACAGCAATGGCACCACCCCTAACGGTAATAACGGTTCCCACCTCCTTCTTTTCAAGTGGGCCCCTATCACCCAAAGCCAAAACGCTGCCGCCGCCAATGGCAGCGCCGCCACTAACTATGACAAGGTGGATGAGGTGGAGGAGCCGCCTCGCCGCAGATTCAAATACATTCCGGTAATTCGAGTTTGGTTTTTATTAGTGTTCTTGTGGGTGTTTGGTTTTGTCGGAAAGTGTTGGGCTTGTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

15.04

Weight (kDa)

10.24

Isoelectric Point (pI)

27.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013927)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G22320 AT4G22320
fragaria_vesca FvH4_3g01090
malus_domestica MD05G1356800.v1.1 MD10G1329900.v1.1
prunus_persica Prupe.4G012100_v2.0.a1
pyrus_communis pycom05g32280
rosa_chinensis RchiOBHm_Chr5g0001661
rosa_laevigata RLG00000030952
rosa_multiflora Rmu_ssc0000237.1_g000027
rosa_roxburghii Rroxscaffold_1G00074670
rosa_rugosa Rorug04G0391600
rosa_samantha Rh5AG013100 Rh5BG016400 Rh5CG014100 Rh5DG014200
rosa_wichuraiana Rw5G001260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 167
AciI CCGC 6 cut(s) 40, 246, 249, 264, 302, 310
AgsI TTSAA 3 cut(s) 64, 211, 319
AluBI AGCT 1 cut(s) 107
AluI AGCT 1 cut(s) 107
AoxI GGCC 3 cut(s) 15, 67, 216
ApaI GGGCCC 2 cut(s) 19, 220
ApeKI GCWGC 2 cut(s) 242, 258
AspLEI GCGC 1 cut(s) 263
AspS9I GGNCC 7 cut(s) 15, 16, 47, 68, 97, 216, 217
AsuC2I CCSGG 1 cut(s) 71
AsuHPI GGTGA 1 cut(s) 217
AvaII GGWCC 2 cut(s) 47, 97
BaeGI GKGCMC 2 cut(s) 19, 220
BanI GGYRCC 1 cut(s) 167
BanII GRGCYC 2 cut(s) 19, 220
BbvI GCAGC 2 cut(s) 229, 270
BccI CCATC 1 cut(s) 144
BcnI CCSGG 1 cut(s) 71
BfoI RGCGCY 1 cut(s) 264
BisI GCNGC 7 cut(s) 243, 246, 249, 259, 264, 302, 310
BlsI GCNGC 7 cut(s) 244, 247, 250, 260, 265, 303, 311
Bme1390I CCNGG 1 cut(s) 71
Bme18I GGWCC 2 cut(s) 47, 97
BmgT120I GGNCC 7 cut(s) 15, 16, 47, 68, 97, 216, 217
BmiI GGNNCC 8 cut(s) 16, 17, 98, 169, 193, 218, 219, 300
BmrFI CCNGG 1 cut(s) 71
BpuMI CCSGG 1 cut(s) 71
BsaAI YACGTR 1 cut(s) 103
BsaJI CCNNGG 1 cut(s) 54
BsaWI WCCGGW 1 cut(s) 328
Bse3DI GCAATG 1 cut(s) 169
BseDI CCNNGG 1 cut(s) 54
BseGI GGATG 1 cut(s) 292
BseMI GCAATG 1 cut(s) 169
BseRI GAGGAG 4 cut(s) 99, 102, 105, 311
BseSI GKGCMC 2 cut(s) 19, 220
BseXI GCAGC 2 cut(s) 229, 270
BshFI GGCC 3 cut(s) 17, 69, 218
BshNI GGYRCC 1 cut(s) 167
BsiSI CCGG 2 cut(s) 71, 329
BsnI GGCC 3 cut(s) 17, 69, 218
Bsp120I GGGCCC 2 cut(s) 15, 216
Bsp1286I GDGCHC 2 cut(s) 19, 220
BspACI CCGC 6 cut(s) 40, 246, 249, 264, 302, 310
BspANI GGCC 3 cut(s) 17, 69, 218
BspLI GGNNCC 8 cut(s) 16, 17, 98, 169, 193, 218, 219, 300
BspT107I GGYRCC 1 cut(s) 167
BsrDI GCAATG 1 cut(s) 169
BssECI CCNNGG 1 cut(s) 54
Bst4CI ACNGT 3 cut(s) 58, 182, 191
BstBAI YACGTR 1 cut(s) 103
BstDSI CCRYGG 1 cut(s) 54
BstF5I GGATG 1 cut(s) 292
BstH2I RGCGCY 1 cut(s) 264
BstHHI GCGC 1 cut(s) 263
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstSCI CCNGG 1 cut(s) 69
BstSLI GKGCMC 2 cut(s) 19, 220
BstV1I GCAGC 2 cut(s) 229, 270
BstXI CCANNNNNNTGG 1 cut(s) 164
BsuRI GGCC 3 cut(s) 17, 69, 218
BtgI CCRYGG 1 cut(s) 54
BtsCI GGATG 1 cut(s) 292
CfoI GCGC 1 cut(s) 263
Cfr13I GGNCC 7 cut(s) 15, 16, 47, 68, 97, 216, 217
CviJI RGCY 8 cut(s) 17, 53, 69, 107, 218, 234, 301, 395
CviKI_1 RGCY 8 cut(s) 17, 53, 69, 107, 218, 234, 301, 395
Eco24I GRGCYC 2 cut(s) 19, 220
Eco47I GGWCC 2 cut(s) 47, 97
EcoO109I RGGNCCY 2 cut(s) 15, 217
EcoT38I GRGCYC 2 cut(s) 19, 220
FaiI YATR 2 cut(s) 276, 403
FauI CCCGC 1 cut(s) 47
Fnu4HI GCNGC 7 cut(s) 243, 246, 249, 259, 264, 302, 310
FokI GGATG 1 cut(s) 299
FriOI GRGCYC 2 cut(s) 19, 220
Fsp4HI GCNGC 7 cut(s) 243, 246, 249, 259, 264, 302, 310
GlaI GCGC 1 cut(s) 262
GluI GCNGC 7 cut(s) 243, 246, 249, 259, 264, 302, 310
HaeII RGCGCY 1 cut(s) 264
HaeIII GGCC 3 cut(s) 17, 69, 218
HapII CCGG 2 cut(s) 71, 329
HhaI GCGC 1 cut(s) 263
Hin6I GCGC 1 cut(s) 261
HinP1I GCGC 1 cut(s) 261
HinfI GANTC 1 cut(s) 315
HpaII CCGG 2 cut(s) 71, 329
HphI GGTGA 1 cut(s) 217
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 2 cut(s) 141, 383
Hpy188III TCNNGA 1 cut(s) 76
Hpy8I GTNNAC 1 cut(s) 100
HpyAV CCTTC 1 cut(s) 212
HpyCH4III ACNGT 3 cut(s) 58, 182, 191
HpyCH4IV ACGT 1 cut(s) 102
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
HpySE526I ACGT 1 cut(s) 102
HspAI GCGC 1 cut(s) 261
LmnI GCTCC 2 cut(s) 112, 298
LpnPI CCDG 4 cut(s) 61, 63, 84, 342
Lsp1109I GCAGC 2 cut(s) 229, 270
MaeII ACGT 1 cut(s) 102
MboII GAAGA 2 cut(s) 97, 100
MhlI GDGCHC 2 cut(s) 19, 220
MluCI AATT 1 cut(s) 333
MmeI TCCRAC 1 cut(s) 361
MnlI CCTC 9 cut(s) 43, 120, 123, 126, 136, 209, 283, 289, 315
MseI TTAA 1 cut(s) 144
MslI CAYNNNNRTG 1 cut(s) 162
MspI CCGG 2 cut(s) 71, 329
MspR9I CCNGG 1 cut(s) 71
MwoI GCNNNNNNNGC 1 cut(s) 248
NciI CCSGG 1 cut(s) 71
NlaIV GGNNCC 8 cut(s) 16, 17, 98, 169, 193, 218, 219, 300
PfeI GAWTC 1 cut(s) 315
PkrI GCNGC 7 cut(s) 244, 247, 250, 260, 265, 303, 311
Ppu21I YACGTR 1 cut(s) 103
PspN4I GGNNCC 8 cut(s) 16, 17, 98, 169, 193, 218, 219, 300
PspOMI GGGCCC 2 cut(s) 15, 216
PspPI GGNCC 7 cut(s) 15, 16, 47, 68, 97, 216, 217
PsrI GAACNNNNNNTAC 2 cut(s) 175, 207
RseI CAYNNNNRTG 1 cut(s) 162
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 7 cut(s) 243, 246, 249, 259, 264, 302, 310
Sau96I GGNCC 7 cut(s) 15, 16, 47, 68, 97, 216, 217
ScrFI CCNGG 1 cut(s) 71
SduI GDGCHC 2 cut(s) 19, 220
SetI ASST 7 cut(s) 35, 105, 109, 128, 201, 285, 294
SinI GGWCC 2 cut(s) 47, 97
SmiMI CAYNNNNRTG 1 cut(s) 162
Sse9I AATT 1 cut(s) 333
SsiI CCGC 6 cut(s) 40, 246, 249, 264, 302, 310
StyD4I CCNGG 1 cut(s) 69
TaaI ACNGT 3 cut(s) 58, 182, 191
TaiI ACGT 1 cut(s) 105
TaqI TCGA 3 cut(s) 28, 35, 337
TasI AATT 1 cut(s) 333
TauI GCSGC 5 cut(s) 248, 251, 266, 304, 312
TfiI GAWTC 1 cut(s) 315
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TseI GCWGC 2 cut(s) 242, 258
TspGWI ACGGA 1 cut(s) 60
VpaK11BI GGWCC 2 cut(s) 47, 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.