Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0013927

Physical Location & Seq

Genomic Coordinates Forward (+)

998693 .. 1001119

Gene Structure 2427 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG014200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGAGGGAGTTGGGGCCCGAACGGGTCGAACCTCGACCCGCTACGGACCAGCCACGGTGTTCAATGGCCCGGTCAGGAAGTGGAAGAAGAAGTGGGTCCACGTAGCTCCTCCTCCTCATCACACCTCTCACTCCCATCAGATTAACGCCCACAACCACAACAATGGCATCACCCCTAACGGTAATAACGGTTCCCACCTCCTTCTTTTCAAGTGGGCCCCTATCACCCAAAGCCAAAACGCTGCCGCCGCGAATGGCAGCGCCGCCACTAACTATGACAAGGTGGATGAGGTGGAGGAGCCGCCTCGCCGCAGATTCAAATACATTCCGATTGCTTTATTAGAGGAACAGCAAAATGAGGCTGCAGAACAGGTTGAAGAAGAAGCTAACTTGATAGATACTGAGACAGCTGAAACAGAGGCAGCCGCCAAGGACGAGGGTTTAGTTGAAAAACCTGACATTAATGATGTCCCTATGGAAGAAAATCAGGTGAATTGTTTGCCCTTTTATATATTTGCCTTTCGAGTTCTTGTAGGTAGGACTTCGAGATGTGTAGAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

187

Amino Acids

20.82

Weight (kDa)

5.75

Isoelectric Point (pI)

34.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22320 AT4G22320
fragaria_vesca	FvH4_3g01090
malus_domestica	MD05G1356800.v1.1 MD10G1329900.v1.1
prunus_persica	Prupe.4G012100_v2.0.a1
pyrus_communis	pycom05g32280
rosa_chinensis	RchiOBHm_Chr5g0001661
rosa_laevigata	RLG00000030952
rosa_multiflora	Rmu_ssc0000237.1_g000027
rosa_roxburghii	Rroxscaffold_1G00074670
rosa_rugosa	Rorug04G0391600
rosa_samantha	Rh5AG013100 Rh5BG016400 Rh5CG014100 Rh5DG014200
rosa_wichuraiana	Rw5G001260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	251
AciI	CCGC	7 cut(s)	40, 246, 249, 264, 302, 310, 426
AcsI	RAATTY	1 cut(s)	558
AgsI	TTSAA	5 cut(s)	64, 211, 319, 377, 449
AluBI	AGCT	3 cut(s)	107, 386, 410
AluI	AGCT	3 cut(s)	107, 386, 410
Alw26I	GTCTC	1 cut(s)	398
AoxI	GGCC	3 cut(s)	15, 67, 216
ApaI	GGGCCC	2 cut(s)	19, 220
ApeKI	GCWGC	4 cut(s)	242, 258, 362, 422
ApoI	RAATTY	1 cut(s)	558
AseI	ATTAAT	1 cut(s)	462
AspLEI	GCGC	1 cut(s)	263
AspS9I	GGNCC	7 cut(s)	15, 16, 47, 68, 97, 216, 217
AsuC2I	CCSGG	1 cut(s)	71
AsuHPI	GGTGA	3 cut(s)	163, 217, 502
AvaII	GGWCC	2 cut(s)	47, 97
BaeGI	GKGCMC	2 cut(s)	19, 220
BanII	GRGCYC	2 cut(s)	19, 220
BbvI	GCAGC	4 cut(s)	229, 270, 349, 434
BccI	CCATC	1 cut(s)	144
BcnI	CCSGG	1 cut(s)	71
BcoDI	GTCTC	1 cut(s)	398
BfmI	CTRYAG	1 cut(s)	363
BfoI	RGCGCY	1 cut(s)	264
Bme1390I	CCNGG	1 cut(s)	71
Bme18I	GGWCC	2 cut(s)	47, 97
BmgT120I	GGNCC	7 cut(s)	15, 16, 47, 68, 97, 216, 217
BmiI	GGNNCC	7 cut(s)	16, 17, 98, 193, 218, 219, 300
BmrFI	CCNGG	1 cut(s)	71
BmsI	GCATC	1 cut(s)	177
BpuMI	CCSGG	1 cut(s)	71
BsaAI	YACGTR	1 cut(s)	103
BsaJI	CCNNGG	2 cut(s)	54, 429
BseDI	CCNNGG	2 cut(s)	54, 429
BseGI	GGATG	1 cut(s)	292
BseMII	CTCAG	1 cut(s)	393
BseRI	GAGGAG	4 cut(s)	99, 102, 105, 311
BseSI	GKGCMC	2 cut(s)	19, 220
BseXI	GCAGC	4 cut(s)	229, 270, 349, 434
Bsh1236I	CGCG	1 cut(s)	251
BshFI	GGCC	3 cut(s)	17, 69, 218
BsiSI	CCGG	1 cut(s)	71
BslFI	GGGAC	1 cut(s)	455
BsmAI	GTCTC	1 cut(s)	398
BsmFI	GGGAC	1 cut(s)	455
BsnI	GGCC	3 cut(s)	17, 69, 218
Bsp120I	GGGCCC	2 cut(s)	15, 216
Bsp1286I	GDGCHC	2 cut(s)	19, 220
BspACI	CCGC	7 cut(s)	40, 246, 249, 264, 302, 310, 426
BspANI	GGCC	3 cut(s)	17, 69, 218
BspCNI	CTCAG	1 cut(s)	394
BspFNI	CGCG	1 cut(s)	251
BspLI	GGNNCC	7 cut(s)	16, 17, 98, 193, 218, 219, 300
BspMAI	CTGCAG	1 cut(s)	367
BssECI	CCNNGG	2 cut(s)	54, 429
BssT1I	CCWWGG	1 cut(s)	429
Bst4CI	ACNGT	3 cut(s)	58, 182, 191
BstBAI	YACGTR	1 cut(s)	103
BstDEI	CTNAG	1 cut(s)	402
BstDSI	CCRYGG	1 cut(s)	54
BstF5I	GGATG	1 cut(s)	292
BstFNI	CGCG	1 cut(s)	251
BstH2I	RGCGCY	1 cut(s)	264
BstHHI	GCGC	1 cut(s)	263
BstMAI	GTCTC	1 cut(s)	398
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	69
BstSFI	CTRYAG	1 cut(s)	363
BstSLI	GKGCMC	2 cut(s)	19, 220
BstUI	CGCG	1 cut(s)	251
BstV1I	GCAGC	4 cut(s)	229, 270, 349, 434
BstXI	CCANNNNNNTGG	1 cut(s)	164
BsuRI	GGCC	3 cut(s)	17, 69, 218
BtgI	CCRYGG	1 cut(s)	54
BtsCI	GGATG	1 cut(s)	292
CfoI	GCGC	1 cut(s)	263
Cfr13I	GGNCC	7 cut(s)	15, 16, 47, 68, 97, 216, 217
DdeI	CTNAG	1 cut(s)	402
Eco130I	CCWWGG	1 cut(s)	429
Eco24I	GRGCYC	2 cut(s)	19, 220
Eco47I	GGWCC	2 cut(s)	47, 97
EcoO109I	RGGNCCY	2 cut(s)	15, 217
EcoT14I	CCWWGG	1 cut(s)	429
EcoT38I	GRGCYC	2 cut(s)	19, 220
ErhI	CCWWGG	1 cut(s)	429
FaiI	YATR	4 cut(s)	276, 476, 510, 512
FaqI	GGGAC	1 cut(s)	455
FauI	CCCGC	1 cut(s)	47
FokI	GGATG	1 cut(s)	299
FriOI	GRGCYC	2 cut(s)	19, 220
GlaI	GCGC	1 cut(s)	262
HaeII	RGCGCY	1 cut(s)	264
HaeIII	GGCC	3 cut(s)	17, 69, 218
HapII	CCGG	1 cut(s)	71
HhaI	GCGC	1 cut(s)	263
Hin6I	GCGC	1 cut(s)	261
HinP1I	GCGC	1 cut(s)	261
HinfI	GANTC	1 cut(s)	315
HpaII	CCGG	1 cut(s)	71
HphI	GGTGA	3 cut(s)	163, 217, 502
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	2 cut(s)	141, 330
Hpy188III	TCNNGA	2 cut(s)	76, 546
Hpy8I	GTNNAC	1 cut(s)	100
HpyAV	CCTTC	1 cut(s)	212
HpyCH4III	ACNGT	3 cut(s)	58, 182, 191
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	1 cut(s)	365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
HpyF3I	CTNAG	1 cut(s)	402
HpySE526I	ACGT	1 cut(s)	102
HspAI	GCGC	1 cut(s)	261
LmnI	GCTCC	2 cut(s)	112, 298
LpnPI	CCDG	6 cut(s)	61, 63, 84, 356, 468, 473
Lsp1109I	GCAGC	4 cut(s)	229, 270, 349, 434
LweI	GCATC	1 cut(s)	177
MaeII	ACGT	1 cut(s)	102
MboII	GAAGA	5 cut(s)	97, 100, 389, 392, 491
MhlI	GDGCHC	2 cut(s)	19, 220
MluCI	AATT	2 cut(s)	493, 558
MseI	TTAA	2 cut(s)	144, 462
MslI	CAYNNNNRTG	1 cut(s)	162
MspA1I	CMGCKG	1 cut(s)	410
MspI	CCGG	1 cut(s)	71
MspR9I	CCNGG	1 cut(s)	71
MvnI	CGCG	1 cut(s)	251
MwoI	GCNNNNNNNGC	1 cut(s)	248
NciI	CCSGG	1 cut(s)	71
NlaIV	GGNNCC	7 cut(s)	16, 17, 98, 193, 218, 219, 300
PfeI	GAWTC	1 cut(s)	315
Ppu21I	YACGTR	1 cut(s)	103
PshBI	ATTAAT	1 cut(s)	462
PspN4I	GGNNCC	7 cut(s)	16, 17, 98, 193, 218, 219, 300
PspOMI	GGGCCC	2 cut(s)	15, 216
PspPI	GGNCC	7 cut(s)	15, 16, 47, 68, 97, 216, 217
PsrI	GAACNNNNNNTAC	2 cut(s)	175, 207
PstI	CTGCAG	1 cut(s)	367
PvuII	CAGCTG	1 cut(s)	410
RseI	CAYNNNNRTG	1 cut(s)	162
SaqAI	TTAA	2 cut(s)	144, 462
Sau96I	GGNCC	7 cut(s)	15, 16, 47, 68, 97, 216, 217
ScrFI	CCNGG	1 cut(s)	71
SduI	GDGCHC	2 cut(s)	19, 220
SfaNI	GCATC	1 cut(s)	177
SfcI	CTRYAG	1 cut(s)	363
SinI	GGWCC	2 cut(s)	47, 97
SmiMI	CAYNNNNRTG	1 cut(s)	162
Sse9I	AATT	2 cut(s)	493, 558
SsiI	CCGC	7 cut(s)	40, 246, 249, 264, 302, 310, 426
StyD4I	CCNGG	1 cut(s)	69
StyI	CCWWGG	1 cut(s)	429
TaaI	ACNGT	3 cut(s)	58, 182, 191
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	4 cut(s)	28, 35, 523, 545
TasI	AATT	2 cut(s)	493, 558
TauI	GCSGC	6 cut(s)	248, 251, 266, 304, 312, 428
TfiI	GAWTC	1 cut(s)	315
Tru1I	TTAA	2 cut(s)	144, 462
Tru9I	TTAA	2 cut(s)	144, 462
TseI	GCWGC	4 cut(s)	242, 258, 362, 422
TspGWI	ACGGA	1 cut(s)	60
VpaK11BI	GGWCC	2 cut(s)	47, 97
VspI	ATTAAT	1 cut(s)	462
XapI	RAATTY	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.