Rh5BG016400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0013927
Physical Location & Seq
Forward (+)
1170638 .. 1173446
2809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG016400.1

Sequence Viewer

Length: 495 bp
ATGGAGGGAGTTGGGGCCCGAACGGGTCGAACCTCGACCCGCTACGGACCAGCCACGGTGTTCAATGGCCCGGTCAGGAAGTGGAAGAAGAAGTGGGTCCACGTAGCTCCTCCTCCTCCTCATCACACCTCTCACTCCCATCAGATTAACGCCCACAACCACAGCAATGGCACCACCCCTAACGGTAATAACGGTTCCCACCTCCTTCTTTTCAAGTGGGCCCCTATCACCCAAACCCAAAACGCTGCCGCCGCCAATGGCAGCGCCGCCACTAACTATGATAAGGTGGATGAGGTGGAGGAGCCGCCTCGCCGCAGATTCAAATACATTCCGATTGCTTTATTAGAGGAACAGCAAAATGAGGCTGCAGAACAGGTTGAAGAAGAAGCTAACTTGATAGATACTGAGACAGCTGAGGCAACCGCCAAGGACGAGGGTTTAGTTGAAAAACCTGACATTAATGATGTCCCTATGGAAGAAAATCAGAGTGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

18.06

Weight (kDa)

5.59

Isoelectric Point (pI)

28.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013927)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G22320 AT4G22320
fragaria_vesca FvH4_3g01090
malus_domestica MD05G1356800.v1.1 MD10G1329900.v1.1
prunus_persica Prupe.4G012100_v2.0.a1
pyrus_communis pycom05g32280
rosa_chinensis RchiOBHm_Chr5g0001661
rosa_laevigata RLG00000030952
rosa_multiflora Rmu_ssc0000237.1_g000027
rosa_roxburghii Rroxscaffold_1G00074670
rosa_rugosa Rorug04G0391600
rosa_samantha Rh5AG013100 Rh5BG016400 Rh5CG014100 Rh5DG014200
rosa_wichuraiana Rw5G001260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 170
AciI CCGC 7 cut(s) 40, 249, 252, 267, 305, 313, 423
AgsI TTSAA 5 cut(s) 64, 214, 322, 380, 446
AluBI AGCT 3 cut(s) 107, 389, 413
AluI AGCT 3 cut(s) 107, 389, 413
Alw26I GTCTC 1 cut(s) 401
AoxI GGCC 3 cut(s) 15, 67, 219
ApaI GGGCCC 2 cut(s) 19, 223
ApeKI GCWGC 3 cut(s) 245, 261, 365
AseI ATTAAT 1 cut(s) 459
AspLEI GCGC 1 cut(s) 266
AspS9I GGNCC 7 cut(s) 15, 16, 47, 68, 97, 219, 220
AsuC2I CCSGG 1 cut(s) 71
AsuHPI GGTGA 1 cut(s) 220
AvaII GGWCC 2 cut(s) 47, 97
BaeGI GKGCMC 2 cut(s) 19, 223
BanI GGYRCC 1 cut(s) 170
BanII GRGCYC 2 cut(s) 19, 223
BbvCI CCTCAGC 1 cut(s) 414
BbvI GCAGC 3 cut(s) 232, 273, 352
BccI CCATC 1 cut(s) 147
BcnI CCSGG 1 cut(s) 71
BcoDI GTCTC 1 cut(s) 401
BfmI CTRYAG 1 cut(s) 366
BfoI RGCGCY 1 cut(s) 267
BisI GCNGC 8 cut(s) 246, 249, 252, 262, 267, 305, 313, 366
BlsI GCNGC 8 cut(s) 247, 250, 253, 263, 268, 306, 314, 367
Bme1390I CCNGG 1 cut(s) 71
Bme18I GGWCC 2 cut(s) 47, 97
BmgT120I GGNCC 7 cut(s) 15, 16, 47, 68, 97, 219, 220
BmiI GGNNCC 8 cut(s) 16, 17, 98, 172, 196, 221, 222, 303
BmrFI CCNGG 1 cut(s) 71
Bpu10I CCTNAGC 1 cut(s) 414
BpuMI CCSGG 1 cut(s) 71
BsaAI YACGTR 1 cut(s) 103
BsaJI CCNNGG 2 cut(s) 54, 426
Bse3DI GCAATG 1 cut(s) 172
BseDI CCNNGG 2 cut(s) 54, 426
BseGI GGATG 1 cut(s) 295
BseMI GCAATG 1 cut(s) 172
BseMII CTCAG 2 cut(s) 396, 405
BseRI GAGGAG 5 cut(s) 99, 102, 105, 108, 314
BseSI GKGCMC 2 cut(s) 19, 223
BseXI GCAGC 3 cut(s) 232, 273, 352
BshFI GGCC 3 cut(s) 17, 69, 221
BshNI GGYRCC 1 cut(s) 170
BsiSI CCGG 1 cut(s) 71
BslFI GGGAC 1 cut(s) 452
BsmAI GTCTC 1 cut(s) 401
BsmFI GGGAC 1 cut(s) 452
BsnI GGCC 3 cut(s) 17, 69, 221
Bsp120I GGGCCC 2 cut(s) 15, 219
Bsp1286I GDGCHC 2 cut(s) 19, 223
BspACI CCGC 7 cut(s) 40, 249, 252, 267, 305, 313, 423
BspANI GGCC 3 cut(s) 17, 69, 221
BspCNI CTCAG 2 cut(s) 397, 406
BspLI GGNNCC 8 cut(s) 16, 17, 98, 172, 196, 221, 222, 303
BspMAI CTGCAG 1 cut(s) 370
BspT107I GGYRCC 1 cut(s) 170
BsrDI GCAATG 1 cut(s) 172
BssECI CCNNGG 2 cut(s) 54, 426
BssT1I CCWWGG 1 cut(s) 426
Bst4CI ACNGT 3 cut(s) 58, 185, 194
BstBAI YACGTR 1 cut(s) 103
BstDEI CTNAG 2 cut(s) 405, 414
BstDSI CCRYGG 1 cut(s) 54
BstF5I GGATG 1 cut(s) 295
BstH2I RGCGCY 1 cut(s) 267
BstHHI GCGC 1 cut(s) 266
BstMAI GTCTC 1 cut(s) 401
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstSCI CCNGG 1 cut(s) 69
BstSFI CTRYAG 1 cut(s) 366
BstSLI GKGCMC 2 cut(s) 19, 223
BstV1I GCAGC 3 cut(s) 232, 273, 352
BstXI CCANNNNNNTGG 1 cut(s) 167
BsuRI GGCC 3 cut(s) 17, 69, 221
BtgI CCRYGG 1 cut(s) 54
BtsCI GGATG 1 cut(s) 295
CfoI GCGC 1 cut(s) 266
Cfr13I GGNCC 7 cut(s) 15, 16, 47, 68, 97, 219, 220
CviJI RGCY 9 cut(s) 17, 53, 69, 107, 221, 304, 365, 389, 413
CviKI_1 RGCY 9 cut(s) 17, 53, 69, 107, 221, 304, 365, 389, 413
DdeI CTNAG 2 cut(s) 405, 414
Eco130I CCWWGG 1 cut(s) 426
Eco24I GRGCYC 2 cut(s) 19, 223
Eco47I GGWCC 2 cut(s) 47, 97
EcoO109I RGGNCCY 2 cut(s) 15, 220
EcoT14I CCWWGG 1 cut(s) 426
EcoT38I GRGCYC 2 cut(s) 19, 223
ErhI CCWWGG 1 cut(s) 426
FaiI YATR 2 cut(s) 279, 473
FaqI GGGAC 1 cut(s) 452
FauI CCCGC 1 cut(s) 47
Fnu4HI GCNGC 8 cut(s) 246, 249, 252, 262, 267, 305, 313, 366
FokI GGATG 1 cut(s) 302
FriOI GRGCYC 2 cut(s) 19, 223
Fsp4HI GCNGC 8 cut(s) 246, 249, 252, 262, 267, 305, 313, 366
GlaI GCGC 1 cut(s) 265
GluI GCNGC 8 cut(s) 246, 249, 252, 262, 267, 305, 313, 366
HaeII RGCGCY 1 cut(s) 267
HaeIII GGCC 3 cut(s) 17, 69, 221
HapII CCGG 1 cut(s) 71
HhaI GCGC 1 cut(s) 266
Hin6I GCGC 1 cut(s) 264
HinP1I GCGC 1 cut(s) 264
HinfI GANTC 1 cut(s) 318
HpaII CCGG 1 cut(s) 71
HphI GGTGA 1 cut(s) 220
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 3 cut(s) 144, 333, 486
Hpy188III TCNNGA 1 cut(s) 76
Hpy8I GTNNAC 1 cut(s) 100
HpyAV CCTTC 1 cut(s) 215
HpyCH4III ACNGT 3 cut(s) 58, 185, 194
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 1 cut(s) 368
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpyF3I CTNAG 2 cut(s) 405, 414
HpySE526I ACGT 1 cut(s) 102
HspAI GCGC 1 cut(s) 264
LmnI GCTCC 2 cut(s) 112, 301
LpnPI CCDG 5 cut(s) 61, 63, 84, 359, 465
Lsp1109I GCAGC 3 cut(s) 232, 273, 352
MaeII ACGT 1 cut(s) 102
MboII GAAGA 5 cut(s) 97, 100, 392, 395, 488
MhlI GDGCHC 2 cut(s) 19, 223
MseI TTAA 2 cut(s) 147, 459
MslI CAYNNNNRTG 1 cut(s) 165
MspA1I CMGCKG 1 cut(s) 413
MspI CCGG 1 cut(s) 71
MspR9I CCNGG 1 cut(s) 71
MwoI GCNNNNNNNGC 1 cut(s) 251
NciI CCSGG 1 cut(s) 71
NlaIV GGNNCC 8 cut(s) 16, 17, 98, 172, 196, 221, 222, 303
PfeI GAWTC 1 cut(s) 318
PkrI GCNGC 8 cut(s) 247, 250, 253, 263, 268, 306, 314, 367
Ppu21I YACGTR 1 cut(s) 103
PshBI ATTAAT 1 cut(s) 459
PspN4I GGNNCC 8 cut(s) 16, 17, 98, 172, 196, 221, 222, 303
PspOMI GGGCCC 2 cut(s) 15, 219
PspPI GGNCC 7 cut(s) 15, 16, 47, 68, 97, 219, 220
PsrI GAACNNNNNNTAC 2 cut(s) 178, 210
PstI CTGCAG 1 cut(s) 370
PvuII CAGCTG 1 cut(s) 413
RseI CAYNNNNRTG 1 cut(s) 165
SaqAI TTAA 2 cut(s) 147, 459
SatI GCNGC 8 cut(s) 246, 249, 252, 262, 267, 305, 313, 366
Sau96I GGNCC 7 cut(s) 15, 16, 47, 68, 97, 219, 220
ScrFI CCNGG 1 cut(s) 71
SduI GDGCHC 2 cut(s) 19, 223
SfcI CTRYAG 1 cut(s) 366
SinI GGWCC 2 cut(s) 47, 97
SmiMI CAYNNNNRTG 1 cut(s) 165
SsiI CCGC 7 cut(s) 40, 249, 252, 267, 305, 313, 423
StyD4I CCNGG 1 cut(s) 69
StyI CCWWGG 1 cut(s) 426
TaaI ACNGT 3 cut(s) 58, 185, 194
TaiI ACGT 1 cut(s) 105
TaqI TCGA 2 cut(s) 28, 35
TauI GCSGC 5 cut(s) 251, 254, 269, 307, 315
TfiI GAWTC 1 cut(s) 318
Tru1I TTAA 2 cut(s) 147, 459
Tru9I TTAA 2 cut(s) 147, 459
TseI GCWGC 3 cut(s) 245, 261, 365
TspGWI ACGGA 1 cut(s) 60
VpaK11BI GGWCC 2 cut(s) 47, 97
VspI ATTAAT 1 cut(s) 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.