Rroxscaffold_1G00074670

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0013927
Physical Location & Seq
Reverse (-)
95576418 .. 95578603
2186 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00074670.1

Sequence Viewer

Length: 609 bp
ATGGAGGGAGTTGGGGCCCGAACGGGTCGAACCTCGACCCGCTACGGACCAGCCACGGTGTTCAATGGCCCGGTCAGGAAGTGGAAGAAGAAGTGGGTCCACGTAGCTCCTCCTCCTCATCACACCTCTCACTCCCATCAGATTAACGCCCACAACCACAACAATGGCACCACCCCTAACGGTAATAACGGTTCCCACCTCCTTCTTTTCAAGTGGGCCCCTATCACCCAAAGCCAAAACGCTGCCGCCGCCAATGGCAGCGCCGCCACTAACTATGACAAGGTGGATGAGGTGGAGGAGCCGCCTCGCCGCAGATTCAAATACATTCCGATTGCTTTATTAGAGGAACAGCAAAATGAGGCTGCAGAGGTTGAAGAAGAAGCTAACTTGATAGATACTGAGACAGCTGAAACAGAGGCAACCACCAAGGACGAGGGTTTAGTTGAAAAACCTGACATTAATGATGTCCCTATGGAAGAAAATCAGGACAATAATCAGGTAGTATGCCAAGATCTGAATGAAAGCACTTTAGATTTAAGTTTGGGCTTGAATGGACATGACAGTGATGATGGTTCTGCTATGAAAACTGATCAAACCAGGAAGGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

202

Amino Acids

22.23

Weight (kDa)

5.06

Isoelectric Point (pI)

28.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013927)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G22320 AT4G22320
fragaria_vesca FvH4_3g01090
malus_domestica MD05G1356800.v1.1 MD10G1329900.v1.1
prunus_persica Prupe.4G012100_v2.0.a1
pyrus_communis pycom05g32280
rosa_chinensis RchiOBHm_Chr5g0001661
rosa_laevigata RLG00000030952
rosa_multiflora Rmu_ssc0000237.1_g000027
rosa_roxburghii Rroxscaffold_1G00074670
rosa_rugosa Rorug04G0391600
rosa_samantha Rh5AG013100 Rh5BG016400 Rh5CG014100 Rh5DG014200
rosa_wichuraiana Rw5G001260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 167
AciI CCGC 6 cut(s) 40, 246, 249, 264, 302, 310
AfiI CCNNNNNNNGG 1 cut(s) 603
AgsI TTSAA 6 cut(s) 64, 211, 319, 374, 446, 550
AjnI CCWGG 1 cut(s) 596
AluBI AGCT 3 cut(s) 107, 383, 407
AluI AGCT 3 cut(s) 107, 383, 407
Alw26I GTCTC 1 cut(s) 395
AoxI GGCC 3 cut(s) 15, 67, 216
ApaI GGGCCC 2 cut(s) 19, 220
ApeKI GCWGC 3 cut(s) 242, 258, 362
AseI ATTAAT 1 cut(s) 459
AspLEI GCGC 1 cut(s) 263
AspS9I GGNCC 7 cut(s) 15, 16, 47, 68, 97, 216, 217
AsuC2I CCSGG 1 cut(s) 71
AsuHPI GGTGA 1 cut(s) 217
AvaII GGWCC 2 cut(s) 47, 97
BaeGI GKGCMC 2 cut(s) 19, 220
BanI GGYRCC 1 cut(s) 167
BanII GRGCYC 2 cut(s) 19, 220
BbvI GCAGC 3 cut(s) 229, 270, 349
BccI CCATC 2 cut(s) 144, 563
BciT130I CCWGG 1 cut(s) 598
BclI TGATCA 1 cut(s) 589
BcnI CCSGG 1 cut(s) 71
BcoDI GTCTC 1 cut(s) 395
BfmI CTRYAG 1 cut(s) 363
BfoI RGCGCY 1 cut(s) 264
BglII AGATCT 1 cut(s) 511
BisI GCNGC 8 cut(s) 243, 246, 249, 259, 264, 302, 310, 363
BlsI GCNGC 8 cut(s) 244, 247, 250, 260, 265, 303, 311, 364
Bme1390I CCNGG 2 cut(s) 71, 598
Bme18I GGWCC 2 cut(s) 47, 97
BmgT120I GGNCC 7 cut(s) 15, 16, 47, 68, 97, 216, 217
BmiI GGNNCC 8 cut(s) 16, 17, 98, 169, 193, 218, 219, 300
BmrFI CCNGG 2 cut(s) 71, 598
BpuMI CCSGG 1 cut(s) 71
BsaAI YACGTR 1 cut(s) 103
BsaJI CCNNGG 2 cut(s) 54, 426
Bsc4I CCNNNNNNNGG 1 cut(s) 603
BseBI CCWGG 1 cut(s) 598
BseDI CCNNGG 2 cut(s) 54, 426
BseGI GGATG 1 cut(s) 292
BseLI CCNNNNNNNGG 1 cut(s) 603
BseMII CTCAG 1 cut(s) 390
BseRI GAGGAG 4 cut(s) 99, 102, 105, 311
BseSI GKGCMC 2 cut(s) 19, 220
BseXI GCAGC 3 cut(s) 229, 270, 349
BshFI GGCC 3 cut(s) 17, 69, 218
BshNI GGYRCC 1 cut(s) 167
BsiSI CCGG 1 cut(s) 71
BslFI GGGAC 1 cut(s) 452
BslI CCNNNNNNNGG 1 cut(s) 603
BsmAI GTCTC 1 cut(s) 395
BsmFI GGGAC 1 cut(s) 452
BsnI GGCC 3 cut(s) 17, 69, 218
Bsp120I GGGCCC 2 cut(s) 15, 216
Bsp1286I GDGCHC 2 cut(s) 19, 220
Bsp143I GATC 2 cut(s) 511, 589
BspACI CCGC 6 cut(s) 40, 246, 249, 264, 302, 310
BspANI GGCC 3 cut(s) 17, 69, 218
BspCNI CTCAG 1 cut(s) 391
BspLI GGNNCC 8 cut(s) 16, 17, 98, 169, 193, 218, 219, 300
BspMAI CTGCAG 1 cut(s) 367
BspT107I GGYRCC 1 cut(s) 167
BssECI CCNNGG 2 cut(s) 54, 426
BssMI GATC 2 cut(s) 511, 589
BssT1I CCWWGG 1 cut(s) 426
Bst2UI CCWGG 1 cut(s) 598
Bst4CI ACNGT 4 cut(s) 58, 182, 191, 563
BstBAI YACGTR 1 cut(s) 103
BstDEI CTNAG 1 cut(s) 399
BstDSI CCRYGG 1 cut(s) 54
BstF5I GGATG 1 cut(s) 292
BstH2I RGCGCY 1 cut(s) 264
BstHHI GCGC 1 cut(s) 263
BstKTI GATC 2 cut(s) 514, 592
BstMAI GTCTC 1 cut(s) 395
BstMBI GATC 2 cut(s) 511, 589
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstNI CCWGG 1 cut(s) 598
BstSCI CCNGG 2 cut(s) 69, 596
BstSFI CTRYAG 1 cut(s) 363
BstSLI GKGCMC 2 cut(s) 19, 220
BstV1I GCAGC 3 cut(s) 229, 270, 349
BstX2I RGATCY 1 cut(s) 511
BstXI CCANNNNNNTGG 1 cut(s) 164
BstYI RGATCY 1 cut(s) 511
BsuRI GGCC 3 cut(s) 17, 69, 218
BtgI CCRYGG 1 cut(s) 54
BtsCI GGATG 1 cut(s) 292
BtsIMutI CAGTG 1 cut(s) 568
CfoI GCGC 1 cut(s) 263
Cfr13I GGNCC 7 cut(s) 15, 16, 47, 68, 97, 216, 217
CviAII CATG 1 cut(s) 557
DdeI CTNAG 1 cut(s) 399
DpnI GATC 2 cut(s) 513, 591
DpnII GATC 2 cut(s) 511, 589
Eco130I CCWWGG 1 cut(s) 426
Eco24I GRGCYC 2 cut(s) 19, 220
Eco47I GGWCC 2 cut(s) 47, 97
EcoO109I RGGNCCY 2 cut(s) 15, 217
EcoRII CCWGG 1 cut(s) 596
EcoT14I CCWWGG 1 cut(s) 426
EcoT38I GRGCYC 2 cut(s) 19, 220
ErhI CCWWGG 1 cut(s) 426
FaeI CATG 1 cut(s) 560
FaiI YATR 5 cut(s) 276, 473, 505, 558, 581
FaqI GGGAC 1 cut(s) 452
FatI CATG 1 cut(s) 556
FauI CCCGC 1 cut(s) 47
FbaI TGATCA 1 cut(s) 589
Fnu4HI GCNGC 8 cut(s) 243, 246, 249, 259, 264, 302, 310, 363
FokI GGATG 1 cut(s) 299
FriOI GRGCYC 2 cut(s) 19, 220
Fsp4HI GCNGC 8 cut(s) 243, 246, 249, 259, 264, 302, 310, 363
GlaI GCGC 1 cut(s) 262
GluI GCNGC 8 cut(s) 243, 246, 249, 259, 264, 302, 310, 363
HaeII RGCGCY 1 cut(s) 264
HaeIII GGCC 3 cut(s) 17, 69, 218
HapII CCGG 1 cut(s) 71
HhaI GCGC 1 cut(s) 263
Hin1II CATG 1 cut(s) 560
Hin6I GCGC 1 cut(s) 261
HinP1I GCGC 1 cut(s) 261
HinfI GANTC 1 cut(s) 315
HpaII CCGG 1 cut(s) 71
HphI GGTGA 1 cut(s) 217
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 3 cut(s) 141, 330, 516
Hpy188III TCNNGA 2 cut(s) 76, 485
Hpy8I GTNNAC 1 cut(s) 100
HpyAV CCTTC 2 cut(s) 212, 595
HpyCH4III ACNGT 4 cut(s) 58, 182, 191, 563
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 1 cut(s) 365
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
HpyF3I CTNAG 1 cut(s) 399
HpySE526I ACGT 1 cut(s) 102
Hsp92II CATG 1 cut(s) 560
HspAI GCGC 1 cut(s) 261
Ksp22I TGATCA 1 cut(s) 589
Kzo9I GATC 2 cut(s) 511, 589
LmnI GCTCC 2 cut(s) 112, 298
LpnPI CCDG 7 cut(s) 61, 63, 84, 465, 470, 482, 583
Lsp1109I GCAGC 3 cut(s) 229, 270, 349
MaeII ACGT 1 cut(s) 102
MalI GATC 2 cut(s) 513, 591
MboI GATC 2 cut(s) 511, 589
MboII GAAGA 5 cut(s) 97, 100, 386, 389, 488
MflI RGATCY 1 cut(s) 511
MhlI GDGCHC 2 cut(s) 19, 220
MseI TTAA 3 cut(s) 144, 459, 536
MslI CAYNNNNRTG 2 cut(s) 162, 561
MspA1I CMGCKG 1 cut(s) 407
MspI CCGG 1 cut(s) 71
MspR9I CCNGG 2 cut(s) 71, 598
MvaI CCWGG 1 cut(s) 598
MwoI GCNNNNNNNGC 1 cut(s) 248
NciI CCSGG 1 cut(s) 71
NdeII GATC 2 cut(s) 511, 589
NlaIII CATG 1 cut(s) 560
NlaIV GGNNCC 8 cut(s) 16, 17, 98, 169, 193, 218, 219, 300
PfeI GAWTC 1 cut(s) 315
PkrI GCNGC 8 cut(s) 244, 247, 250, 260, 265, 303, 311, 364
Ppu21I YACGTR 1 cut(s) 103
PshBI ATTAAT 1 cut(s) 459
Psp6I CCWGG 1 cut(s) 596
PspGI CCWGG 1 cut(s) 596
PspN4I GGNNCC 8 cut(s) 16, 17, 98, 169, 193, 218, 219, 300
PspOMI GGGCCC 2 cut(s) 15, 216
PspPI GGNCC 7 cut(s) 15, 16, 47, 68, 97, 216, 217
PsrI GAACNNNNNNTAC 2 cut(s) 175, 207
PstI CTGCAG 1 cut(s) 367
PsuI RGATCY 1 cut(s) 511
PvuII CAGCTG 1 cut(s) 407
RseI CAYNNNNRTG 2 cut(s) 162, 561
SaqAI TTAA 3 cut(s) 144, 459, 536
SatI GCNGC 8 cut(s) 243, 246, 249, 259, 264, 302, 310, 363
Sau3AI GATC 2 cut(s) 511, 589
Sau96I GGNCC 7 cut(s) 15, 16, 47, 68, 97, 216, 217
ScrFI CCNGG 2 cut(s) 71, 598
SduI GDGCHC 2 cut(s) 19, 220
SfcI CTRYAG 1 cut(s) 363
SinI GGWCC 2 cut(s) 47, 97
SmiMI CAYNNNNRTG 2 cut(s) 162, 561
SsiI CCGC 6 cut(s) 40, 246, 249, 264, 302, 310
StyD4I CCNGG 2 cut(s) 69, 596
StyI CCWWGG 1 cut(s) 426
TaaI ACNGT 4 cut(s) 58, 182, 191, 563
TaiI ACGT 1 cut(s) 105
TaqI TCGA 2 cut(s) 28, 35
TauI GCSGC 5 cut(s) 248, 251, 266, 304, 312
TfiI GAWTC 1 cut(s) 315
Tru1I TTAA 3 cut(s) 144, 459, 536
Tru9I TTAA 3 cut(s) 144, 459, 536
TscAI CASTG 1 cut(s) 568
TseI GCWGC 3 cut(s) 242, 258, 362
TspDTI ATGAA 2 cut(s) 534, 596
TspGWI ACGGA 1 cut(s) 60
TspRI CASTG 1 cut(s) 568
VpaK11BI GGWCC 2 cut(s) 47, 97
VspI ATTAAT 1 cut(s) 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.