FvH4_3g01790

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0014683
Physical Location & Seq
Reverse (-)
923544 .. 924854
1311 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g01790.t1

Sequence Viewer

Length: 1311 bp
ATGGCAACCTTTCAAGCCATAACCATATTTCCTTTGATGGAATCTTCAAATCAAAAACGTATTACTAAAGGAATAGTTATTTCAGCAACCAATGATGCAGCAAATGGCATGGTGAGTCCACTTACTTCTCTTCCCAAGCTCCCAACCAGAAGTTTGGCCGAGGCCTTGGACGTCAAAGCTGGTTCTTACAAAATTCCAAGCTCCAGTACTGTGCAAAAGGGAAGTGATTCCAATCCTGCCATTTACAATACTATTTCTGCATCACATAGTAGTAGTGTAAAACTTTCTAATCCAGTGGTGATGTCTGAGATATATGCAATCATGGAGGCAGTTGCTGATAGAGTGGAGATGCACAAGAACATTGGAGCACAGCGCGACAATTGGAACCAGCTTCTTCTGAGTTCCATCAATGTGATCACTCTCACCGCTGCAACCATTGCAGGAATTGCAGCTAGCTGTACTGCAAGTTCTGGAGTAGTAGCCTTTACGGCACTCAAGGTCTCTTCCACTCTTCTCTATGTAGCAGCCACTGGAATGTTGGTGGTGATGAACATGATCCAGCCGTCCCAACTAGCTGAAGAACAAAGAATTGCAGCCAGATTGTTCAAACAGCTTCATAACCAGATTCAAACAACAGTGTCTCTTCAATACCCGATTACAATGGATGTAAATGAAGCTATAGAGAAAGTGTTGGCATTGGACAGGGCATATCCACTTCCTTTATTAGGTGAAATGCTTGACAAATTTCCCAAAACTGTGAAGCCTGCAATATGGTGGCCGCAACAGAAGCAGCTTAGCCGACGAGGAGTACCTACTCAAGGAGTTGAAGGAACCTCCAACGGCTGGAGTGCAAAACTTGAAGAGGAAATGAGCGAGATTGTTGGGGTGCTGAAGAGCAAGGATGTGCCAGAATACTTAAGGTTGACTGAGATAGCCTTGAAAATTAACAGAACTCTAGCCATTTCTGGCCCTCTTTTAACAGGGCTTGCAGCTTTGGGATCAGCTTGTTTAGGTTCTAGTCCTTTTGGGGTTTGGAGTGGGATGGTAGGAGTGATTGGGGGAGCTTTGGCCAGTGTGGTGAACACAATGGACCATGGGGGTCAAGTTGAAATGGTGGTTGAAATGTACAGAAGCAATGCTGGTTTCTTTAGGCTCATGCAAGAAACCATAGAAGCAAATTTAAGAGAAAAAGAAGTTGGGAGAAGGGAGAATGGTCAAGTGCTTGAAATGAAGGTGGCTTTGCAACTAGGAAGGAGCCTATCAGAACTGAAGCATCTTTCTGTTTTCTCTTATGGAAGCAAACTGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chloroplast_duf

Protein Analysis

437

Amino Acids

47.02

Weight (kDa)

8.86

Isoelectric Point (pI)

43.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroplast_duf PF14476 104 - 424 4.3e-149 Petal formation-expressed
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 174
AccB7I CCANNNNNTGG 1 cut(s) 843
AccII CGCG 1 cut(s) 375
AciI CCGC 2 cut(s) 426, 779
AclWI GGATC 2 cut(s) 550, 1006
AcoI YGGCCR 3 cut(s) 156, 776, 1068
AcsI RAATTY 3 cut(s) 192, 743, 1177
AcuI CTGAAG 3 cut(s) 597, 911, 1289
AcyI GRCGYC 1 cut(s) 171
AfaI GTAC 4 cut(s) 208, 460, 810, 1127
AfiI CCNNNNNNNGG 3 cut(s) 725, 818, 843
AflII CTTAAG 1 cut(s) 916
AjuI GAANNNNNNNTTGG 2 cut(s) 1179, 1211
Alw21I GWGCWC 1 cut(s) 370
Alw26I GTCTC 2 cut(s) 505, 645
AlwI GGATC 2 cut(s) 550, 1006
AlwNI CAGNNNCTG 2 cut(s) 335, 530
AoxI GGCC 5 cut(s) 156, 162, 776, 967, 1068
ApeKI GCWGC 7 cut(s) 98, 428, 449, 524, 593, 790, 989
ApoI RAATTY 3 cut(s) 192, 743, 1177
Asp700I GAANNNNTTC 1 cut(s) 226
AspLEI GCGC 1 cut(s) 375
AspS9I GGNCC 2 cut(s) 968, 1090
AsuHPI GGTGA 6 cut(s) 124, 310, 415, 556, 740, 1090
AsuNHI GCTAGC 1 cut(s) 452
AvaII GGWCC 1 cut(s) 1090
BalI TGGCCA 1 cut(s) 1070
Bbv12I GWGCWC 1 cut(s) 370
BbvI GCAGC 7 cut(s) 110, 415, 461, 536, 605, 802, 1001
BccI CCATC 3 cut(s) 31, 413, 1036
BceAI ACGGC 3 cut(s) 504, 547, 856
BclI TGATCA 1 cut(s) 414
BcoDI GTCTC 2 cut(s) 505, 645
BfaI CTAG 6 cut(s) 453, 572, 956, 1017, 1247, 1309
BfmI CTRYAG 1 cut(s) 678
BfrI CTTAAG 1 cut(s) 916
BglI GCCNNNNNGGC 1 cut(s) 488
BisI GCNGC 8 cut(s) 99, 429, 450, 525, 594, 779, 791, 990
BlpI GCTNAGC 1 cut(s) 794
BlsI GCNGC 8 cut(s) 100, 430, 451, 526, 595, 780, 792, 991
BmcAI AGTACT 1 cut(s) 208
Bme18I GGWCC 1 cut(s) 1090
BmgT120I GGNCC 2 cut(s) 968, 1090
BmiI GGNNCC 3 cut(s) 386, 832, 1256
BmsI GCATC 4 cut(s) 85, 269, 339, 1282
BmtI GCTAGC 1 cut(s) 456
BpmI CTGGAG 3 cut(s) 187, 492, 865
Bpu1102I GCTNAGC 1 cut(s) 794
BpuEI CTTGAG 2 cut(s) 479, 801
BsaBI GATNNNNATC 1 cut(s) 231
BsaHI GRCGYC 1 cut(s) 171
BsaI GGTCTC 1 cut(s) 505
BsaJI CCNNGG 3 cut(s) 159, 165, 1093
Bsc4I CCNNNNNNNGG 3 cut(s) 725, 818, 843
Bse1I ACTGG 4 cut(s) 204, 293, 535, 1071
Bse3DI GCAATG 2 cut(s) 435, 1141
Bse8I GATNNNNATC 1 cut(s) 231
BseDI CCNNGG 3 cut(s) 159, 165, 1093
BseGI GGATG 3 cut(s) 670, 907, 1047
BseJI GATNNNNATC 1 cut(s) 231
BseLI CCNNNNNNNGG 3 cut(s) 725, 818, 843
BseMI GCAATG 2 cut(s) 435, 1141
BseMII CTCAG 3 cut(s) 297, 389, 918
BseNI ACTGG 4 cut(s) 204, 293, 535, 1071
BseRI GAGGAG 1 cut(s) 819
BseXI GCAGC 7 cut(s) 110, 415, 461, 536, 605, 802, 1001
Bsh1236I CGCG 1 cut(s) 375
BshFI GGCC 5 cut(s) 158, 164, 778, 969, 1070
BsiHKAI GWGCWC 1 cut(s) 370
BslFI GGGAC 1 cut(s) 550
BslI CCNNNNNNNGG 3 cut(s) 725, 818, 843
BsmAI GTCTC 2 cut(s) 505, 645
BsmFI GGGAC 1 cut(s) 550
BsnI GGCC 5 cut(s) 158, 164, 778, 969, 1070
Bso31I GGTCTC 1 cut(s) 505
Bsp1286I GDGCHC 1 cut(s) 370
Bsp1407I TGTACA 1 cut(s) 1125
Bsp143I GATC 3 cut(s) 414, 555, 998
Bsp1720I GCTNAGC 1 cut(s) 794
Bsp19I CCATGG 1 cut(s) 1093
BspACI CCGC 2 cut(s) 426, 779
BspANI GGCC 5 cut(s) 158, 164, 778, 969, 1070
BspCNI CTCAG 3 cut(s) 298, 390, 919
BspFNI CGCG 1 cut(s) 375
BspLI GGNNCC 3 cut(s) 386, 832, 1256
BspOI GCTAGC 1 cut(s) 456
BspPI GGATC 2 cut(s) 550, 1006
BspQI GCTCTTC 1 cut(s) 887
BspTI CTTAAG 1 cut(s) 916
BspTNI GGTCTC 1 cut(s) 505
BsrDI GCAATG 2 cut(s) 435, 1141
BsrGI TGTACA 1 cut(s) 1125
BsrI ACTGG 4 cut(s) 204, 293, 535, 1071
BssECI CCNNGG 3 cut(s) 159, 165, 1093
BssMI GATC 3 cut(s) 414, 555, 998
BssNI GRCGYC 1 cut(s) 171
BssT1I CCWWGG 2 cut(s) 165, 1093
Bst4CI ACNGT 4 cut(s) 211, 637, 757, 1305
Bst6I CTCTTC 6 cut(s) 135, 508, 516, 648, 855, 887
BstACI GRCGYC 1 cut(s) 171
BstAFI CTTAAG 1 cut(s) 916
BstAPI GCANNNNNTGC 2 cut(s) 437, 446
BstAUI TGTACA 1 cut(s) 1125
BstC8I GCNNGC 3 cut(s) 454, 765, 987
BstDEI CTNAG 4 cut(s) 306, 398, 794, 927
BstDSI CCRYGG 1 cut(s) 1093
BstENI CCTNNNNNAGG 2 cut(s) 723, 816
BstF5I GGATG 3 cut(s) 670, 907, 1047
BstFNI CGCG 1 cut(s) 375
BstHHI GCGC 1 cut(s) 375
BstKTI GATC 3 cut(s) 417, 558, 1001
BstMAI GTCTC 2 cut(s) 505, 645
BstMBI GATC 3 cut(s) 414, 555, 998
BstMWI GCNNNNNNNGC 4 cut(s) 437, 446, 488, 787
BstSFI CTRYAG 1 cut(s) 678
BstUI CGCG 1 cut(s) 375
BstV1I GCAGC 7 cut(s) 110, 415, 461, 536, 605, 802, 1001
BstXI CCANNNNNNTGG 1 cut(s) 154
BsuRI GGCC 5 cut(s) 158, 164, 778, 969, 1070
BtgI CCRYGG 1 cut(s) 1093
BtsCI GGATG 3 cut(s) 670, 907, 1047
BtsIMutI CAGTG 4 cut(s) 300, 528, 642, 1078
Cac8I GCNNGC 3 cut(s) 454, 765, 987
CaiI CAGNNNCTG 2 cut(s) 335, 530
CfoI GCGC 1 cut(s) 375
Cfr13I GGNCC 2 cut(s) 968, 1090
Csp6I GTAC 4 cut(s) 207, 459, 809, 1126
CviAII CATG 5 cut(s) 109, 322, 553, 1094, 1156
CviQI GTAC 4 cut(s) 207, 459, 809, 1126
DdeI CTNAG 4 cut(s) 306, 398, 794, 927
DpnI GATC 3 cut(s) 416, 557, 1000
DpnII GATC 3 cut(s) 414, 555, 998
EaeI YGGCCR 3 cut(s) 156, 776, 1068
Eam1104I CTCTTC 6 cut(s) 135, 508, 516, 648, 855, 887
EarI CTCTTC 6 cut(s) 135, 508, 516, 648, 855, 887
Eco130I CCWWGG 2 cut(s) 165, 1093
Eco147I AGGCCT 1 cut(s) 164
Eco31I GGTCTC 1 cut(s) 505
Eco47I GGWCC 1 cut(s) 1090
Eco57I CTGAAG 3 cut(s) 597, 911, 1289
EcoNI CCTNNNNNAGG 2 cut(s) 723, 816
EcoT14I CCWWGG 2 cut(s) 165, 1093
ErhI CCWWGG 2 cut(s) 165, 1093
FaeI CATG 5 cut(s) 112, 325, 556, 1097, 1159
FaqI GGGAC 1 cut(s) 550
FatI CATG 5 cut(s) 108, 321, 552, 1093, 1155
FbaI TGATCA 1 cut(s) 414
Fnu4HI GCNGC 8 cut(s) 99, 429, 450, 525, 594, 779, 791, 990
FokI GGATG 3 cut(s) 677, 914, 1054
Fsp4HI GCNGC 8 cut(s) 99, 429, 450, 525, 594, 779, 791, 990
FspBI CTAG 6 cut(s) 453, 572, 956, 1017, 1247, 1309
GlaI GCGC 1 cut(s) 374
GluI GCNGC 8 cut(s) 99, 429, 450, 525, 594, 779, 791, 990
GsuI CTGGAG 3 cut(s) 187, 492, 865
HaeIII GGCC 5 cut(s) 158, 164, 778, 969, 1070
HhaI GCGC 1 cut(s) 375
Hin1I GRCGYC 1 cut(s) 171
Hin1II CATG 5 cut(s) 112, 325, 556, 1097, 1159
Hin6I GCGC 1 cut(s) 373
HinP1I GCGC 1 cut(s) 373
HincII GTYRAC 1 cut(s) 924
HindII GTYRAC 1 cut(s) 924
HinfI GANTC 4 cut(s) 41, 115, 227, 625
HphI GGTGA 6 cut(s) 124, 310, 415, 556, 740, 1090
Hpy166II GTNNAC 3 cut(s) 119, 924, 1081
Hpy188I TCNGA 3 cut(s) 307, 399, 1264
Hpy188III TCNNGA 1 cut(s) 471
Hpy8I GTNNAC 3 cut(s) 119, 924, 1081
Hpy99I CGWCG 1 cut(s) 804
HpyAV CCTTC 4 cut(s) 821, 1197, 1225, 1245
HpyCH4III ACNGT 4 cut(s) 211, 637, 757, 1305
HpyCH4IV ACGT 2 cut(s) 58, 171
HpyF10VI GCNNNNNNNGC 4 cut(s) 437, 446, 488, 787
HpyF3I CTNAG 4 cut(s) 306, 398, 794, 927
HpySE526I ACGT 2 cut(s) 58, 171
Hsp92I GRCGYC 1 cut(s) 171
Hsp92II CATG 5 cut(s) 112, 325, 556, 1097, 1159
HspAI GCGC 1 cut(s) 373
Ksp22I TGATCA 1 cut(s) 414
Kzo9I GATC 3 cut(s) 414, 555, 998
LguI GCTCTTC 1 cut(s) 887
LmnI GCTCC 5 cut(s) 144, 206, 365, 1061, 1254
Lsp1109I GCAGC 7 cut(s) 110, 415, 461, 536, 605, 802, 1001
LweI GCATC 4 cut(s) 85, 269, 339, 1282
MaeI CTAG 6 cut(s) 453, 572, 956, 1017, 1247, 1309
MaeII ACGT 2 cut(s) 58, 171
MalI GATC 3 cut(s) 416, 557, 1000
MboI GATC 3 cut(s) 414, 555, 998
MboII GAAGA 9 cut(s) 36, 122, 386, 495, 503, 590, 635, 872, 904
MfeI CAATTG 1 cut(s) 379
MhlI GDGCHC 1 cut(s) 370
MlsI TGGCCA 1 cut(s) 1070
MluCI AATT 7 cut(s) 192, 379, 444, 588, 743, 942, 1177
MluNI TGGCCA 1 cut(s) 1070
MlyI GAGTC 1 cut(s) 124
MmeI TCCRAC 1 cut(s) 861
MnlI CCTC 6 cut(s) 154, 319, 797, 844, 856, 981
Mox20I TGGCCA 1 cut(s) 1070
MroXI GAANNNNTTC 1 cut(s) 226
MscI TGGCCA 1 cut(s) 1070
MseI TTAA 4 cut(s) 917, 945, 977, 1181
MslI CAYNNNNRTG 2 cut(s) 410, 533
Msp20I TGGCCA 1 cut(s) 1070
MspA1I CMGCKG 1 cut(s) 428
MspCI CTTAAG 1 cut(s) 916
MunI CAATTG 1 cut(s) 379
MvnI CGCG 1 cut(s) 375
MwoI GCNNNNNNNGC 4 cut(s) 437, 446, 488, 787
NcoI CCATGG 1 cut(s) 1093
NdeII GATC 3 cut(s) 414, 555, 998
NheI GCTAGC 1 cut(s) 452
NlaIII CATG 5 cut(s) 112, 325, 556, 1097, 1159
NlaIV GGNNCC 3 cut(s) 386, 832, 1256
NmeAIII GCCGAG 1 cut(s) 184
PceI AGGCCT 1 cut(s) 164
PciSI GCTCTTC 1 cut(s) 887
PdmI GAANNNNTTC 1 cut(s) 226
PfeI GAWTC 3 cut(s) 41, 227, 625
PflMI CCANNNNNTGG 1 cut(s) 843
PkrI GCNGC 8 cut(s) 100, 430, 451, 526, 595, 780, 792, 991
PleI GAGTC 1 cut(s) 123
PpsI GAGTC 1 cut(s) 123
PspN4I GGNNCC 3 cut(s) 386, 832, 1256
PspPI GGNCC 2 cut(s) 968, 1090
PsrI GAACNNNNNNTAC 2 cut(s) 451, 483
PstNI CAGNNNCTG 2 cut(s) 335, 530
RsaI GTAC 4 cut(s) 208, 460, 810, 1127
RsaNI GTAC 4 cut(s) 207, 459, 809, 1126
RseI CAYNNNNRTG 2 cut(s) 410, 533
SapI GCTCTTC 1 cut(s) 887
SaqAI TTAA 4 cut(s) 917, 945, 977, 1181
SatI GCNGC 8 cut(s) 99, 429, 450, 525, 594, 779, 791, 990
Sau3AI GATC 3 cut(s) 414, 555, 998
Sau96I GGNCC 2 cut(s) 968, 1090
ScaI AGTACT 1 cut(s) 208
SchI GAGTC 1 cut(s) 124
SduI GDGCHC 1 cut(s) 370
SfaNI GCATC 4 cut(s) 85, 269, 339, 1282
SfcI CTRYAG 1 cut(s) 678
SinI GGWCC 1 cut(s) 1090
SmiMI CAYNNNNRTG 2 cut(s) 410, 533
SmlI CTYRAG 3 cut(s) 494, 816, 916
SmoI CTYRAG 3 cut(s) 494, 816, 916
Sse9I AATT 7 cut(s) 192, 379, 444, 588, 743, 942, 1177
SseBI AGGCCT 1 cut(s) 164
SsiI CCGC 2 cut(s) 426, 779
SspMI CTAG 6 cut(s) 453, 572, 956, 1017, 1247, 1309
StuI AGGCCT 1 cut(s) 164
StyI CCWWGG 2 cut(s) 165, 1093
TaaI ACNGT 4 cut(s) 211, 637, 757, 1305
TaiI ACGT 2 cut(s) 61, 174
TasI AATT 7 cut(s) 192, 379, 444, 588, 743, 942, 1177
TatI WGTACW 3 cut(s) 206, 458, 1125
TauI GCSGC 1 cut(s) 781
TfiI GAWTC 3 cut(s) 41, 227, 625
Tru1I TTAA 4 cut(s) 917, 945, 977, 1181
Tru9I TTAA 4 cut(s) 917, 945, 977, 1181
TscAI CASTG 4 cut(s) 300, 535, 642, 1078
TseI GCWGC 7 cut(s) 98, 428, 449, 524, 593, 790, 989
TspDTI ATGAA 4 cut(s) 563, 605, 687, 1244
TspRI CASTG 4 cut(s) 300, 535, 642, 1078
Van91I CCANNNNNTGG 1 cut(s) 843
Vha464I CTTAAG 1 cut(s) 916
VpaK11BI GGWCC 1 cut(s) 1090
XagI CCTNNNNNAGG 2 cut(s) 723, 816
XapI RAATTY 3 cut(s) 192, 743, 1177
XcmI CCANNNNNNNNNTGG 1 cut(s) 535
XmnI GAANNNNTTC 1 cut(s) 226
XspI CTAG 6 cut(s) 453, 572, 956, 1017, 1247, 1309
ZraI GACGTC 1 cut(s) 172
ZrmI AGTACT 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.