RLG00000031047

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0014683
Physical Location & Seq
Reverse (-)
1574447 .. 1575722
1276 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031047

Sequence Viewer

Length: 1185 bp
ATGGATTCTGCAAATCAAAAGCGTATTCCTAAAGGAGTAGTTATTGTAGCAACCAATAATGCACCAAACGGCAAGGTGAGTCCACTTACTTCTCTTCCCAAGCTCCCAACCAGAAGTTTGGTTGAGGGCTTGGACATGAAAACTGGTGCTTACAAAATTCCAAGCTCCACTGTGCAAAAGGAAATTGATTCTAATCCTACCATTCACAAGTGGAGATGCACAAGAACATTGGAGCACAGCGACAATTGGAACCACCTCCTTCTGAGCGCCATCAATGTTATCACTCTCACTGCTGCAACCATTGCAGGAATTGCAGCTAGCAGTACTGCAAGTGCTGGAGTACCCTTGACGGCACTCAAGGTCTCTTCCGCTCTTCTCCATGTAGCAGCCACTGGAATGTTGGTGGTGATGAACATGATCCAGCCGTCCCAACTAGCCGAAGAACAGAGAATTGCAGCCAGATTGTTCAAGCAGCTTCATAGCCAGATTCAAACAACAGTGTCTCTTCAAAACCCGAATACAATGGACGTGAATGAAGCTATAGAGAAAGTGTTGGCATTGGACAGGGCATATCCACTTCCTTTATTAGGGGAAATGCTTGACAAATTTCCCAAAACTGTGGAGCCTGCAATATGGTGGCCGCAACAGAAGCAGCTTAGCCGACGAGGAGTACCTGATCAAGGAATTGAAGGAAGATTGGCAAATAGATCCAACAGTTGGAGTGCAAAACTTGAAGAGGAAATGACAGAGATTGTTGGGGTATTGAAGAGCAAGGATGTGCCAGAGTACCTGAGGTTGACCGAGATAGCCTTGAAAATTAACAGAATTCTAGCCATTTCTGGCCCTCTTTTAACAGGGCTTGCAGCTTTGGGATCTGCTTTTTTGGGTTCTAGTACTTTTGGAGTTTGGGGCGGGATGGTAGGAGCCATTGGGGGAGCTTTGGCAAGTGTGGTGAACACAATAGAGCATGGGGGTCAAGTTGGAATGGTGGTTGAAATGTGTAGAAGCAATACTGGTTTCTTTAGGCTCATGCAAGAGACCATAGAAGCGAATTTAAGAGAAAAAGAAGTTGGGAGAAGGGAGAATGGGCAAGTGCTTGAAATGAAGGTGGCTTTGCAGCTGGGAAGAAGCCTATCAGAACTCAAGCATCTTTCTGTCTTTTCTTATGGAAGCAAGCTGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chloroplast_duf

Protein Analysis

395

Amino Acids

42.69

Weight (kDa)

9.33

Isoelectric Point (pI)

38.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroplast_duf PF14476 79 - 382 1.6e-135 Petal formation-expressed
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 717
AccBSI CCGCTC 1 cut(s) 371
AciI CCGC 3 cut(s) 369, 641, 912
AclWI GGATC 3 cut(s) 412, 702, 880
AcoI YGGCCR 1 cut(s) 638
AcsI RAATTY 4 cut(s) 156, 605, 825, 1051
AfaI GTAC 5 cut(s) 325, 342, 672, 788, 895
AfiI CCNNNNNNNGG 3 cut(s) 587, 680, 717
AgsI TTSAA 9 cut(s) 469, 491, 509, 689, 734, 766, 814, 995, 1100
AjiI CACGTC 1 cut(s) 529
AjuI GAANNNNNNNTTGG 2 cut(s) 1053, 1085
Alw21I GWGCWC 1 cut(s) 237
Alw26I GTCTC 3 cut(s) 367, 507, 1031
AlwI GGATC 3 cut(s) 412, 702, 880
AlwNI CAGNNNCTG 1 cut(s) 392
AoxI GGCC 2 cut(s) 638, 841
ApeKI GCWGC 8 cut(s) 293, 314, 386, 455, 472, 652, 863, 1117
ApoI RAATTY 4 cut(s) 156, 605, 825, 1051
AspLEI GCGC 1 cut(s) 269
AspS9I GGNCC 1 cut(s) 842
AsuHPI GGTGA 3 cut(s) 88, 418, 964
AsuNHI GCTAGC 1 cut(s) 317
AxyI CCTNAGG 1 cut(s) 791
Bbv12I GWGCWC 1 cut(s) 237
BbvI GCAGC 8 cut(s) 280, 326, 398, 467, 484, 664, 875, 1129
BccI CCATC 2 cut(s) 278, 910
BceAI ACGGC 3 cut(s) 85, 366, 409
BclI TGATCA 1 cut(s) 676
BcoDI GTCTC 3 cut(s) 367, 507, 1031
BfaI CTAG 5 cut(s) 318, 434, 830, 891, 1183
BfmI CTRYAG 1 cut(s) 540
BfoI RGCGCY 1 cut(s) 270
BisI GCNGC 9 cut(s) 294, 315, 387, 456, 473, 641, 653, 864, 1118
BlpI GCTNAGC 1 cut(s) 656
BlsI GCNGC 9 cut(s) 295, 316, 388, 457, 474, 642, 654, 865, 1119
BmcAI AGTACT 2 cut(s) 325, 895
BmgBI CACGTC 1 cut(s) 529
BmgT120I GGNCC 1 cut(s) 842
BmiI GGNNCC 3 cut(s) 251, 624, 925
BmsI GCATC 2 cut(s) 206, 1156
BmtI GCTAGC 1 cut(s) 321
BpmI CTGGAG 1 cut(s) 357
Bpu1102I GCTNAGC 1 cut(s) 656
BpuEI CTTGAG 2 cut(s) 341, 1127
BsaBI GATNNNNATC 1 cut(s) 192
BsaI GGTCTC 2 cut(s) 367, 1031
Bsc4I CCNNNNNNNGG 3 cut(s) 587, 680, 717
Bse1I ACTGG 3 cut(s) 148, 397, 1018
Bse21I CCTNAGG 1 cut(s) 791
Bse3DI GCAATG 1 cut(s) 300
Bse8I GATNNNNATC 1 cut(s) 192
BseGI GGATG 2 cut(s) 781, 921
BseJI GATNNNNATC 1 cut(s) 192
BseLI CCNNNNNNNGG 3 cut(s) 587, 680, 717
BseMI GCAATG 1 cut(s) 300
BseMII CTCAG 2 cut(s) 254, 782
BseNI ACTGG 3 cut(s) 148, 397, 1018
BseRI GAGGAG 1 cut(s) 681
BseXI GCAGC 8 cut(s) 280, 326, 398, 467, 484, 664, 875, 1129
BseYI CCCAGC 1 cut(s) 1120
BshFI GGCC 2 cut(s) 640, 843
BsiHKAI GWGCWC 1 cut(s) 237
BslFI GGGAC 1 cut(s) 412
BslI CCNNNNNNNGG 3 cut(s) 587, 680, 717
BsmAI GTCTC 3 cut(s) 367, 507, 1031
BsmFI GGGAC 1 cut(s) 412
BsnI GGCC 2 cut(s) 640, 843
Bso31I GGTCTC 2 cut(s) 367, 1031
Bsp1286I GDGCHC 1 cut(s) 237
Bsp143I GATC 4 cut(s) 417, 676, 707, 872
Bsp1720I GCTNAGC 1 cut(s) 656
BspACI CCGC 3 cut(s) 369, 641, 912
BspANI GGCC 2 cut(s) 640, 843
BspCNI CTCAG 2 cut(s) 255, 783
BspLI GGNNCC 3 cut(s) 251, 624, 925
BspOI GCTAGC 1 cut(s) 321
BspPI GGATC 3 cut(s) 412, 702, 880
BspQI GCTCTTC 2 cut(s) 378, 761
BspTNI GGTCTC 2 cut(s) 367, 1031
BsrBI CCGCTC 1 cut(s) 371
BsrDI GCAATG 1 cut(s) 300
BsrI ACTGG 3 cut(s) 148, 397, 1018
BssMI GATC 4 cut(s) 417, 676, 707, 872
Bst4CI ACNGT 4 cut(s) 172, 499, 619, 716
Bst6I CTCTTC 6 cut(s) 99, 370, 378, 510, 729, 761
BstAPI GCANNNNNTGC 2 cut(s) 302, 311
BstC8I GCNNGC 4 cut(s) 319, 627, 861, 1175
BstDEI CTNAG 3 cut(s) 263, 656, 791
BstENI CCTNNNNNAGG 2 cut(s) 585, 678
BstF5I GGATG 2 cut(s) 781, 921
BstH2I RGCGCY 1 cut(s) 270
BstHHI GCGC 1 cut(s) 269
BstKTI GATC 4 cut(s) 420, 679, 710, 875
BstMAI GTCTC 3 cut(s) 367, 507, 1031
BstMBI GATC 4 cut(s) 417, 676, 707, 872
BstMWI GCNNNNNNNGC 3 cut(s) 302, 311, 649
BstSFI CTRYAG 1 cut(s) 540
BstV1I GCAGC 8 cut(s) 280, 326, 398, 467, 484, 664, 875, 1129
BstX2I RGATCY 2 cut(s) 707, 872
BstXI CCANNNNNNTGG 2 cut(s) 118, 619
BstYI RGATCY 2 cut(s) 707, 872
Bsu36I CCTNAGG 1 cut(s) 791
BsuRI GGCC 2 cut(s) 640, 843
BtrI CACGTC 1 cut(s) 529
BtsCI GGATG 2 cut(s) 781, 921
BtsI GCAGTG 1 cut(s) 288
BtsIMutI CAGTG 4 cut(s) 168, 288, 390, 504
Cac8I GCNNGC 4 cut(s) 319, 627, 861, 1175
CaiI CAGNNNCTG 1 cut(s) 392
CfoI GCGC 1 cut(s) 269
Cfr13I GGNCC 1 cut(s) 842
Csp6I GTAC 5 cut(s) 324, 341, 671, 787, 894
CviAII CATG 5 cut(s) 136, 380, 415, 968, 1030
CviQI GTAC 5 cut(s) 324, 341, 671, 787, 894
DdeI CTNAG 3 cut(s) 263, 656, 791
DpnI GATC 4 cut(s) 419, 678, 709, 874
DpnII GATC 4 cut(s) 417, 676, 707, 872
EaeI YGGCCR 1 cut(s) 638
Eam1104I CTCTTC 6 cut(s) 99, 370, 378, 510, 729, 761
EarI CTCTTC 6 cut(s) 99, 370, 378, 510, 729, 761
Eco31I GGTCTC 2 cut(s) 367, 1031
Eco81I CCTNAGG 1 cut(s) 791
EcoNI CCTNNNNNAGG 2 cut(s) 585, 678
EcoRI GAATTC 1 cut(s) 825
FaeI CATG 5 cut(s) 139, 383, 418, 971, 1033
FaqI GGGAC 1 cut(s) 412
FatI CATG 5 cut(s) 135, 379, 414, 967, 1029
FauI CCCGC 1 cut(s) 905
FbaI TGATCA 1 cut(s) 676
Fnu4HI GCNGC 9 cut(s) 294, 315, 387, 456, 473, 641, 653, 864, 1118
FokI GGATG 2 cut(s) 788, 928
Fsp4HI GCNGC 9 cut(s) 294, 315, 387, 456, 473, 641, 653, 864, 1118
FspBI CTAG 5 cut(s) 318, 434, 830, 891, 1183
GlaI GCGC 1 cut(s) 268
GluI GCNGC 9 cut(s) 294, 315, 387, 456, 473, 641, 653, 864, 1118
GsaI CCCAGC 1 cut(s) 1124
GsuI CTGGAG 1 cut(s) 357
HaeII RGCGCY 1 cut(s) 270
HaeIII GGCC 2 cut(s) 640, 843
HhaI GCGC 1 cut(s) 269
Hin1II CATG 5 cut(s) 139, 383, 418, 971, 1033
Hin6I GCGC 1 cut(s) 267
HinP1I GCGC 1 cut(s) 267
HincII GTYRAC 1 cut(s) 798
HindII GTYRAC 1 cut(s) 798
HinfI GANTC 4 cut(s) 5, 79, 188, 487
HphI GGTGA 3 cut(s) 88, 418, 964
Hpy166II GTNNAC 3 cut(s) 83, 798, 955
Hpy188I TCNGA 2 cut(s) 264, 1138
Hpy8I GTNNAC 3 cut(s) 83, 798, 955
Hpy99I CGWCG 1 cut(s) 666
HpyAV CCTTC 4 cut(s) 269, 683, 1071, 1099
HpyCH4III ACNGT 4 cut(s) 172, 499, 619, 716
HpyCH4IV ACGT 1 cut(s) 528
HpyF10VI GCNNNNNNNGC 3 cut(s) 302, 311, 649
HpyF3I CTNAG 3 cut(s) 263, 656, 791
HpySE526I ACGT 1 cut(s) 528
Hsp92II CATG 5 cut(s) 139, 383, 418, 971, 1033
HspAI GCGC 1 cut(s) 267
Ksp22I TGATCA 1 cut(s) 676
Kzo9I GATC 4 cut(s) 417, 676, 707, 872
LguI GCTCTTC 2 cut(s) 378, 761
LmnI GCTCC 6 cut(s) 108, 170, 232, 622, 923, 935
Lsp1109I GCAGC 8 cut(s) 280, 326, 398, 467, 484, 664, 875, 1129
LweI GCATC 2 cut(s) 206, 1156
MaeI CTAG 5 cut(s) 318, 434, 830, 891, 1183
MaeII ACGT 1 cut(s) 528
MalI GATC 4 cut(s) 419, 678, 709, 874
MbiI CCGCTC 1 cut(s) 371
MboI GATC 4 cut(s) 417, 676, 707, 872
MboII GAAGA 9 cut(s) 86, 357, 365, 452, 497, 705, 746, 778, 1137
MfeI CAATTG 1 cut(s) 244
MflI RGATCY 2 cut(s) 707, 872
MhlI GDGCHC 1 cut(s) 237
MlyI GAGTC 1 cut(s) 88
MmeI TCCRAC 3 cut(s) 698, 735, 961
MnlI CCTC 6 cut(s) 118, 266, 659, 730, 786, 855
MseI TTAA 3 cut(s) 819, 851, 1055
MslI CAYNNNNRTG 1 cut(s) 395
MspA1I CMGCKG 1 cut(s) 1120
MunI CAATTG 1 cut(s) 244
MwoI GCNNNNNNNGC 3 cut(s) 302, 311, 649
NdeII GATC 4 cut(s) 417, 676, 707, 872
NheI GCTAGC 1 cut(s) 317
NlaIII CATG 5 cut(s) 139, 383, 418, 971, 1033
NlaIV GGNNCC 3 cut(s) 251, 624, 925
PciSI GCTCTTC 2 cut(s) 378, 761
PfeI GAWTC 3 cut(s) 5, 188, 487
PflMI CCANNNNNTGG 1 cut(s) 717
PkrI GCNGC 9 cut(s) 295, 316, 388, 457, 474, 642, 654, 865, 1119
PleI GAGTC 1 cut(s) 87
PpsI GAGTC 1 cut(s) 87
PspFI CCCAGC 1 cut(s) 1120
PspN4I GGNNCC 3 cut(s) 251, 624, 925
PspPI GGNCC 1 cut(s) 842
PstNI CAGNNNCTG 1 cut(s) 392
PsuI RGATCY 2 cut(s) 707, 872
PvuII CAGCTG 1 cut(s) 1120
RsaI GTAC 5 cut(s) 325, 342, 672, 788, 895
RsaNI GTAC 5 cut(s) 324, 341, 671, 787, 894
RseI CAYNNNNRTG 1 cut(s) 395
SapI GCTCTTC 2 cut(s) 378, 761
SaqAI TTAA 3 cut(s) 819, 851, 1055
SatI GCNGC 9 cut(s) 294, 315, 387, 456, 473, 641, 653, 864, 1118
Sau3AI GATC 4 cut(s) 417, 676, 707, 872
Sau96I GGNCC 1 cut(s) 842
ScaI AGTACT 2 cut(s) 325, 895
SchI GAGTC 1 cut(s) 88
SduI GDGCHC 1 cut(s) 237
SfaNI GCATC 2 cut(s) 206, 1156
SfcI CTRYAG 1 cut(s) 540
SmiMI CAYNNNNRTG 1 cut(s) 395
SmlI CTYRAG 2 cut(s) 356, 1142
SmoI CTYRAG 2 cut(s) 356, 1142
SsiI CCGC 3 cut(s) 369, 641, 912
SspMI CTAG 5 cut(s) 318, 434, 830, 891, 1183
TaaI ACNGT 4 cut(s) 172, 499, 619, 716
TaiI ACGT 1 cut(s) 531
TaqII GACCGA 1 cut(s) 815
TatI WGTACW 2 cut(s) 323, 893
TauI GCSGC 1 cut(s) 643
TfiI GAWTC 3 cut(s) 5, 188, 487
Tru1I TTAA 3 cut(s) 819, 851, 1055
Tru9I TTAA 3 cut(s) 819, 851, 1055
TscAI CASTG 4 cut(s) 175, 295, 397, 504
TseI GCWGC 8 cut(s) 293, 314, 386, 455, 472, 652, 863, 1117
TspDTI ATGAA 5 cut(s) 152, 425, 467, 549, 1118
TspRI CASTG 4 cut(s) 175, 295, 397, 504
Van91I CCANNNNNTGG 1 cut(s) 717
XagI CCTNNNNNAGG 2 cut(s) 585, 678
XapI RAATTY 4 cut(s) 156, 605, 825, 1051
XcmI CCANNNNNNNNNTGG 1 cut(s) 397
XspI CTAG 5 cut(s) 318, 434, 830, 891, 1183
ZrmI AGTACT 2 cut(s) 325, 895
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.