Prupe.4G018200_v2.0.a1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0014683
Physical Location & Seq
Reverse (-)
847385 .. 848644
1260 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G018200.1

Sequence Viewer

Length: 1260 bp
ATGGCAACCTTTCAAGTTTCAAGCATCTTTTGTTTGATGGGTTCGCCTGATCAAATGCGTTTTCCTAAAGGAGGAGCAATTAAAGCCACCACCAATAATGCACCAAAATTCCAGGTGAGTCCAATTTCTCTTCCCAAGCTCCCATCCAGAAGTTTGGTTGACAACTTGGACATCACAAGTAATGGTTACAAAATCCCAAGTAATAACAGTGCAAGTCATTCTGATGATCCAATGGTTACTTCTAAGCTGTATGCTATCATGGAGGCTATTGCAGATAGAGTGGAGATGCATAAGAATATTGGAGCACAGCGTGACAATTGGAACCACCTCCTTTTGATGTCCATCAATGCAATTACTCTCGCTGCTGCAACCATGGCAGGAATTGCCGCCACCACTTGCGCTGTTACAACCGGAGCACGAGCACCCTTCATGGCTCTCAAGCTCTCTTCCACTATACTTTATGTAGCAGCCACTGGAATGTTGGTGGTGATGAACAAAATCCAACCATCCCAACTTGCTGAAGAACAGAGATACGCAGCTAGATTGTTCAAGCAGCTTCATGCCCAGATTCAAACAACACTATCACTTCACAGTGAAAATACTATGGTGGATGTGAATGAAGCAATGGAGAAAGTCTTGGCATTGGACAGAGCCTACCCACTTCCTTTGTTAGGTGAAATGCTGGATAAATTCCCCAAAACTGTGGAACCGACAATCTGGTGGCCAAAACAAAATCACAGAAGAGCTCAAGGGGCTGAAGGAAAATTAATAGATGGAAATGGTTGGAGTCAAAAATTGGAAGAGGAAATGATAGAGGTAGTTGGGGTTTTGAAAAGCAAGGATGTGCCAGAATACTTGAAGTTGACTGAGAAGGCCTTAAAAATCAACAGAGTTATGGCCATCTCTGGCCCTACATTAACTGGCCTTGCAGCACTGGGGTCTGCTTTTGTGGGTTCTAGTGGTACTTACGGGGTGTGGGGTGTGATGGCAGGAGTTATTTGTGGAGCTTTAGCAAGTGTGGTGAACACATTAGAGCATGGTGGCCAAGTTGGAATGGTGGTTGAAATGTATAGAAGCAATGCTGGTTTCTTTAGGCTCATGCAAGAGACTATAGAATCAAATGTGAAAGAGAAACAAGTTGAGAGAAGAGAGCATGGGCAGGTGTTTGAAATGAAGGTGGCTTTGCAGCTGGGAAGGAGCCTATCAGAACTCAAGCATCTTGCTGTTTTCTCTGAAAAGTTTGCAAGCAAGCTATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chloroplast_duf

Protein Analysis

420

Amino Acids

45.77

Weight (kDa)

8.91

Isoelectric Point (pI)

33.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1150
Acc36I ACCTGC 1 cut(s) 1150
AciI CCGC 1 cut(s) 387
AclWI GGATC 1 cut(s) 221
AcoI YGGCCR 3 cut(s) 722, 897, 1042
AcsI RAATTY 2 cut(s) 107, 689
AcuI CTGAAG 2 cut(s) 540, 777
AdeI CACNNNGTG 1 cut(s) 311
AfaI GTAC 1 cut(s) 964
AfiI CCNNNNNNNGG 2 cut(s) 71, 671
AgsI TTSAA 8 cut(s) 14, 21, 550, 572, 832, 859, 1064, 1169
AjnI CCWGG 1 cut(s) 111
AjuI GAANNNNNNNTTGG 2 cut(s) 223, 255
AluBI AGCT 9 cut(s) 139, 247, 442, 539, 556, 746, 1007, 1189, 1252
AluI AGCT 9 cut(s) 139, 247, 442, 539, 556, 746, 1007, 1189, 1252
Alw21I GWGCWC 4 cut(s) 307, 418, 424, 748
Alw26I GTCTC 1 cut(s) 1100
AlwI GGATC 1 cut(s) 221
AlwNI CAGNNNCTG 1 cut(s) 473
AoxI GGCC 6 cut(s) 722, 873, 897, 907, 922, 1042
ApeKI GCWGC 7 cut(s) 362, 365, 467, 536, 553, 929, 1186
ApoI RAATTY 2 cut(s) 107, 689
AseI ATTAAT 1 cut(s) 767
AspLEI GCGC 1 cut(s) 401
AspS9I GGNCC 1 cut(s) 908
AsuHPI GGTGA 4 cut(s) 127, 499, 686, 1033
BalI TGGCCA 3 cut(s) 724, 899, 1044
BanII GRGCYC 1 cut(s) 748
BauI CACGAG 1 cut(s) 417
Bbv12I GWGCWC 4 cut(s) 307, 418, 424, 748
BbvI GCAGC 7 cut(s) 349, 352, 479, 548, 565, 941, 1198
BccI CCATC 7 cut(s) 31, 151, 350, 514, 767, 908, 979
BciT130I CCWGG 1 cut(s) 113
BclI TGATCA 1 cut(s) 49
BcoDI GTCTC 1 cut(s) 1100
BfaI CTAG 3 cut(s) 540, 957, 1258
BfmI CTRYAG 1 cut(s) 1110
BfuAI ACCTGC 1 cut(s) 1150
BisI GCNGC 8 cut(s) 363, 366, 387, 468, 537, 554, 930, 1187
BlsI GCNGC 8 cut(s) 364, 367, 388, 469, 538, 555, 931, 1188
Bme1390I CCNGG 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 908
BmiI GGNNCC 3 cut(s) 323, 708, 1199
BmrFI CCNGG 1 cut(s) 113
BmrI ACTGGG 1 cut(s) 944
BmsI GCATC 3 cut(s) 33, 276, 1225
BmuI ACTGGG 1 cut(s) 944
BpuEI CTTGAG 3 cut(s) 422, 732, 1196
BsaBI GATNNNNATC 1 cut(s) 341
BsaJI CCNNGG 1 cut(s) 372
BsaWI WCCGGW 1 cut(s) 410
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 671
Bse1I ACTGG 3 cut(s) 478, 925, 939
Bse3DI GCAATG 2 cut(s) 630, 1084
Bse8I GATNNNNATC 1 cut(s) 341
BseBI CCWGG 1 cut(s) 113
BseDI CCNNGG 1 cut(s) 372
BseGI GGATG 4 cut(s) 143, 506, 616, 847
BseJI GATNNNNATC 1 cut(s) 341
BseLI CCNNNNNNNGG 2 cut(s) 71, 671
BseMI GCAATG 2 cut(s) 630, 1084
BseMII CTCAG 1 cut(s) 858
BseNI ACTGG 3 cut(s) 478, 925, 939
BseRI GAGGAG 1 cut(s) 87
BseXI GCAGC 7 cut(s) 349, 352, 479, 548, 565, 941, 1198
BseYI CCCAGC 1 cut(s) 1189
BshFI GGCC 6 cut(s) 724, 875, 899, 909, 924, 1044
BsiHKAI GWGCWC 4 cut(s) 307, 418, 424, 748
BsiSI CCGG 1 cut(s) 411
BslI CCNNNNNNNGG 2 cut(s) 71, 671
BsmAI GTCTC 1 cut(s) 1100
BsnI GGCC 6 cut(s) 724, 875, 899, 909, 924, 1044
Bsp1286I GDGCHC 4 cut(s) 307, 418, 424, 748
Bsp143I GATC 2 cut(s) 49, 226
Bsp19I CCATGG 1 cut(s) 372
BspACI CCGC 1 cut(s) 387
BspANI GGCC 6 cut(s) 724, 875, 899, 909, 924, 1044
BspCNI CTCAG 1 cut(s) 859
BspLI GGNNCC 3 cut(s) 323, 708, 1199
BspMI ACCTGC 1 cut(s) 1150
BspPI GGATC 1 cut(s) 221
BspQI GCTCTTC 1 cut(s) 736
BsrDI GCAATG 2 cut(s) 630, 1084
BsrI ACTGG 3 cut(s) 478, 925, 939
BssECI CCNNGG 1 cut(s) 372
BssMI GATC 2 cut(s) 49, 226
BssSI CACGAG 1 cut(s) 417
BssT1I CCWWGG 1 cut(s) 372
Bst2BI CACGAG 1 cut(s) 417
Bst2UI CCWGG 1 cut(s) 113
Bst4CI ACNGT 3 cut(s) 209, 593, 703
Bst6I CTCTTC 5 cut(s) 135, 451, 736, 795, 1141
BstAPI GCANNNNNTGC 1 cut(s) 383
BstC8I GCNNGC 2 cut(s) 1246, 1250
BstDEI CTNAG 2 cut(s) 243, 867
BstDSI CCRYGG 1 cut(s) 372
BstENI CCTNNNNNAGG 2 cut(s) 69, 669
BstF5I GGATG 4 cut(s) 143, 506, 616, 847
BstHHI GCGC 1 cut(s) 401
BstKTI GATC 2 cut(s) 52, 229
BstMAI GTCTC 1 cut(s) 1100
BstMBI GATC 2 cut(s) 49, 226
BstMWI GCNNNNNNNGC 4 cut(s) 83, 374, 383, 752
BstNI CCWGG 1 cut(s) 113
BstSCI CCNGG 1 cut(s) 111
BstSFI CTRYAG 1 cut(s) 1110
BstV1I GCAGC 7 cut(s) 349, 352, 479, 548, 565, 941, 1198
BstXI CCANNNNNNTGG 2 cut(s) 154, 703
BsuRI GGCC 6 cut(s) 724, 875, 899, 909, 924, 1044
BtgI CCRYGG 1 cut(s) 372
BtsCI GGATG 4 cut(s) 143, 506, 616, 847
BtsIMutI CAGTG 4 cut(s) 214, 471, 598, 932
BveI ACCTGC 1 cut(s) 1150
Cac8I GCNNGC 2 cut(s) 1246, 1250
CaiI CAGNNNCTG 1 cut(s) 473
CfoI GCGC 1 cut(s) 401
Cfr13I GGNCC 1 cut(s) 908
Csp6I GTAC 1 cut(s) 963
CspCI CAANNNNNGTGG 2 cut(s) 648, 683
CviAII CATG 7 cut(s) 259, 373, 430, 560, 1037, 1099, 1154
CviQI GTAC 1 cut(s) 963
DdeI CTNAG 2 cut(s) 243, 867
DpnI GATC 2 cut(s) 51, 228
DpnII GATC 2 cut(s) 49, 226
DraIII CACNNNGTG 1 cut(s) 311
EaeI YGGCCR 3 cut(s) 722, 897, 1042
Eam1104I CTCTTC 5 cut(s) 135, 451, 736, 795, 1141
EarI CTCTTC 5 cut(s) 135, 451, 736, 795, 1141
Ecl136II GAGCTC 1 cut(s) 746
Eco130I CCWWGG 1 cut(s) 372
Eco147I AGGCCT 1 cut(s) 875
Eco24I GRGCYC 1 cut(s) 748
Eco53kI GAGCTC 1 cut(s) 746
Eco57I CTGAAG 2 cut(s) 540, 777
EcoICRI GAGCTC 1 cut(s) 746
EcoNI CCTNNNNNAGG 2 cut(s) 69, 669
EcoRII CCWGG 1 cut(s) 111
EcoT14I CCWWGG 1 cut(s) 372
EcoT22I ATGCAT 1 cut(s) 291
EcoT38I GRGCYC 1 cut(s) 748
ErhI CCWWGG 1 cut(s) 372
FaeI CATG 7 cut(s) 262, 376, 433, 563, 1040, 1102, 1157
FatI CATG 7 cut(s) 258, 372, 429, 559, 1036, 1098, 1153
FbaI TGATCA 1 cut(s) 49
Fnu4HI GCNGC 8 cut(s) 363, 366, 387, 468, 537, 554, 930, 1187
FokI GGATG 4 cut(s) 130, 493, 623, 854
FriOI GRGCYC 1 cut(s) 748
Fsp4HI GCNGC 8 cut(s) 363, 366, 387, 468, 537, 554, 930, 1187
FspBI CTAG 3 cut(s) 540, 957, 1258
GlaI GCGC 1 cut(s) 400
GluI GCNGC 8 cut(s) 363, 366, 387, 468, 537, 554, 930, 1187
GsaI CCCAGC 1 cut(s) 1193
HaeIII GGCC 6 cut(s) 724, 875, 899, 909, 924, 1044
HapII CCGG 1 cut(s) 411
HhaI GCGC 1 cut(s) 401
Hin1II CATG 7 cut(s) 262, 376, 433, 563, 1040, 1102, 1157
Hin6I GCGC 1 cut(s) 399
HinP1I GCGC 1 cut(s) 399
HincII GTYRAC 2 cut(s) 160, 864
HindII GTYRAC 2 cut(s) 160, 864
HinfI GANTC 4 cut(s) 118, 568, 787, 1115
HpaII CCGG 1 cut(s) 411
HphI GGTGA 4 cut(s) 127, 499, 686, 1033
Hpy166II GTNNAC 3 cut(s) 160, 864, 1024
Hpy188I TCNGA 3 cut(s) 223, 1207, 1234
Hpy188III TCNNGA 1 cut(s) 147
Hpy8I GTNNAC 3 cut(s) 160, 864, 1024
HpyAV CCTTC 5 cut(s) 436, 752, 865, 1168, 1188
HpyCH4III ACNGT 3 cut(s) 209, 593, 703
HpyF10VI GCNNNNNNNGC 4 cut(s) 83, 374, 383, 752
HpyF3I CTNAG 2 cut(s) 243, 867
Hsp92II CATG 7 cut(s) 262, 376, 433, 563, 1040, 1102, 1157
HspAI GCGC 1 cut(s) 399
Ksp22I TGATCA 1 cut(s) 49
Kzo9I GATC 2 cut(s) 49, 226
LguI GCTCTTC 1 cut(s) 736
LmnI GCTCC 6 cut(s) 74, 144, 302, 413, 1004, 1197
Lsp1109I GCAGC 7 cut(s) 349, 352, 479, 548, 565, 941, 1198
LweI GCATC 3 cut(s) 33, 276, 1225
MaeI CTAG 3 cut(s) 540, 957, 1258
MaeIII GTNAC 4 cut(s) 185, 235, 311, 403
MalI GATC 2 cut(s) 51, 228
MboI GATC 2 cut(s) 49, 226
MboII GAAGA 6 cut(s) 122, 438, 533, 753, 812, 1158
MfeI CAATTG 1 cut(s) 316
MhlI GDGCHC 4 cut(s) 307, 418, 424, 748
MlsI TGGCCA 3 cut(s) 724, 899, 1044
MluCI AATT 9 cut(s) 78, 107, 123, 316, 351, 381, 689, 764, 794
MluNI TGGCCA 3 cut(s) 724, 899, 1044
MlyI GAGTC 2 cut(s) 127, 796
MmeI TCCRAC 3 cut(s) 526, 764, 1030
MnlI CCTC 5 cut(s) 65, 256, 338, 796, 808
Mox20I TGGCCA 3 cut(s) 724, 899, 1044
Mph1103I ATGCAT 1 cut(s) 291
MscI TGGCCA 3 cut(s) 724, 899, 1044
MseI TTAA 4 cut(s) 81, 767, 878, 917
MslI CAYNNNNRTG 2 cut(s) 222, 476
Msp20I TGGCCA 3 cut(s) 724, 899, 1044
MspA1I CMGCKG 1 cut(s) 1189
MspI CCGG 1 cut(s) 411
MspR9I CCNGG 1 cut(s) 113
MunI CAATTG 1 cut(s) 316
MvaI CCWGG 1 cut(s) 113
MwoI GCNNNNNNNGC 4 cut(s) 83, 374, 383, 752
NcoI CCATGG 1 cut(s) 372
NdeII GATC 2 cut(s) 49, 226
NlaIII CATG 7 cut(s) 262, 376, 433, 563, 1040, 1102, 1157
NlaIV GGNNCC 3 cut(s) 323, 708, 1199
NmuCI GTSAC 1 cut(s) 311
NsiI ATGCAT 1 cut(s) 291
PaqCI CACCTGC 1 cut(s) 1150
PceI AGGCCT 1 cut(s) 875
PciSI GCTCTTC 1 cut(s) 736
PfeI GAWTC 2 cut(s) 568, 1115
PkrI GCNGC 8 cut(s) 364, 367, 388, 469, 538, 555, 931, 1188
PleI GAGTC 2 cut(s) 126, 795
PpsI GAGTC 2 cut(s) 126, 795
PshBI ATTAAT 1 cut(s) 767
Psp124BI GAGCTC 1 cut(s) 748
Psp6I CCWGG 1 cut(s) 111
PspFI CCCAGC 1 cut(s) 1189
PspGI CCWGG 1 cut(s) 111
PspN4I GGNNCC 3 cut(s) 323, 708, 1199
PspPI GGNCC 1 cut(s) 908
PstNI CAGNNNCTG 1 cut(s) 473
PvuII CAGCTG 1 cut(s) 1189
RsaI GTAC 1 cut(s) 964
RsaNI GTAC 1 cut(s) 963
RseI CAYNNNNRTG 2 cut(s) 222, 476
SacI GAGCTC 1 cut(s) 748
SapI GCTCTTC 1 cut(s) 736
SaqAI TTAA 4 cut(s) 81, 767, 878, 917
SatI GCNGC 8 cut(s) 363, 366, 387, 468, 537, 554, 930, 1187
Sau3AI GATC 2 cut(s) 49, 226
Sau96I GGNCC 1 cut(s) 908
SchI GAGTC 2 cut(s) 127, 796
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 4 cut(s) 307, 418, 424, 748
SfaNI GCATC 3 cut(s) 33, 276, 1225
SfcI CTRYAG 1 cut(s) 1110
SmiMI CAYNNNNRTG 2 cut(s) 222, 476
SmlI CTYRAG 3 cut(s) 437, 747, 1211
SmoI CTYRAG 3 cut(s) 437, 747, 1211
Sse9I AATT 9 cut(s) 78, 107, 123, 316, 351, 381, 689, 764, 794
SseBI AGGCCT 1 cut(s) 875
SsiI CCGC 1 cut(s) 387
SspI AATATT 1 cut(s) 298
SspMI CTAG 3 cut(s) 540, 957, 1258
SstI GAGCTC 1 cut(s) 748
StuI AGGCCT 1 cut(s) 875
StyD4I CCNGG 1 cut(s) 111
StyI CCWWGG 1 cut(s) 372
TaaI ACNGT 3 cut(s) 209, 593, 703
TasI AATT 9 cut(s) 78, 107, 123, 316, 351, 381, 689, 764, 794
TauI GCSGC 1 cut(s) 389
TfiI GAWTC 2 cut(s) 568, 1115
Tru1I TTAA 4 cut(s) 81, 767, 878, 917
Tru9I TTAA 4 cut(s) 81, 767, 878, 917
TscAI CASTG 4 cut(s) 214, 478, 598, 939
TseFI GTSAC 1 cut(s) 311
TseI GCWGC 7 cut(s) 362, 365, 467, 536, 553, 929, 1186
Tsp45I GTSAC 1 cut(s) 311
TspDTI ATGAA 5 cut(s) 418, 506, 548, 633, 1187
TspRI CASTG 4 cut(s) 214, 478, 598, 939
VspI ATTAAT 1 cut(s) 767
XagI CCTNNNNNAGG 2 cut(s) 69, 669
XapI RAATTY 2 cut(s) 107, 689
XcmI CCANNNNNNNNNTGG 1 cut(s) 478
XspI CTAG 3 cut(s) 540, 957, 1258
Zsp2I ATGCAT 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.