RchiOBHm_Chr6g0309711

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0014683
Physical Location & Seq
Reverse (-)
67272474 .. 67273082
609 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27852

Sequence Viewer

Length: 603 bp
ATGGTTGGAGTTGCTCTTAAGAAATTTCCCAAAACTGTGGAGCCTGCAATATGGTGGCCGCAACAGAAGCAGCTTAGCCGACGAGGAGTACCTGATCAAGGAATTGAAGGAAGATTGGCAAATAGATCCAACAGTTGGAGTGCAAAACTTGAAGAGGAAATGACAGAGATTGTTGGGGTATTGAAGAGCAAGGATGTGCCAGAGTACCTGAGGTTGACCGAGGTAGCCTTGAAAATTAACAGAATTCTAGCCATTTCTGGCCCTCTTTTAACAGGGCTTGCAGCTTTGGGATCTGCTTTTTTGGGTTCTAGTATTTATGGAGTTTGGAGCGGGATGGTAGGAGTCATTGGGGGAGCTTTGGCAAGTGTGGTGAACACAATAGAGCATGGGGGTCAAGTTGGAATGGTGGTTGAAATGTATAGAAGCAATGCTGGTTTCTTTAGGCTCATACAAGAGACCATAGAAGCAAATTTAAGAGAAAAAGAAGTTGGGAGAAGGGAGAATGGGCAAGTGCTTGAAATGAAGGTGGCTTTGCAGCTGGGAAGGAGCCTATCAGAACTCAAGCATCTTTCTGTCTTTTCTTATGGAAGCAAGCTGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chloroplast_duf

Protein Analysis

200

Amino Acids

21.88

Weight (kDa)

9.52

Isoelectric Point (pI)

41.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroplast_duf PF14476 2 - 188 5.2e-78 Petal formation-expressed
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 135
AccBSI CCGCTC 1 cut(s) 330
AciI CCGC 2 cut(s) 59, 330
AclWI GGATC 2 cut(s) 120, 298
AcoI YGGCCR 1 cut(s) 56
AcsI RAATTY 3 cut(s) 23, 243, 469
AfaI GTAC 2 cut(s) 90, 206
AfiI CCNNNNNNNGG 2 cut(s) 98, 135
AflII CTTAAG 1 cut(s) 17
AgsI TTSAA 6 cut(s) 107, 152, 184, 232, 413, 518
AjuI GAANNNNNNNTTGG 2 cut(s) 471, 503
AluBI AGCT 5 cut(s) 73, 284, 356, 538, 595
AluI AGCT 5 cut(s) 73, 284, 356, 538, 595
Alw26I GTCTC 1 cut(s) 449
AlwI GGATC 2 cut(s) 120, 298
AoxI GGCC 2 cut(s) 56, 259
ApeKI GCWGC 3 cut(s) 70, 281, 535
ApoI RAATTY 3 cut(s) 23, 243, 469
AspS9I GGNCC 1 cut(s) 260
AsuHPI GGTGA 1 cut(s) 382
AxyI CCTNAGG 1 cut(s) 209
BbvI GCAGC 3 cut(s) 82, 293, 547
BccI CCATC 1 cut(s) 328
BclI TGATCA 1 cut(s) 94
BcoDI GTCTC 1 cut(s) 449
BfaI CTAG 3 cut(s) 248, 309, 601
BfrI CTTAAG 1 cut(s) 17
BisI GCNGC 4 cut(s) 59, 71, 282, 536
BlpI GCTNAGC 1 cut(s) 74
BlsI GCNGC 4 cut(s) 60, 72, 283, 537
BmgT120I GGNCC 1 cut(s) 260
BmiI GGNNCC 2 cut(s) 42, 548
BmsI GCATC 1 cut(s) 574
Bpu1102I GCTNAGC 1 cut(s) 74
BpuEI CTTGAG 1 cut(s) 545
BsaI GGTCTC 1 cut(s) 449
BsaJI CCNNGG 1 cut(s) 219
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 135
Bse21I CCTNAGG 1 cut(s) 209
Bse3DI GCAATG 1 cut(s) 433
BseDI CCNNGG 1 cut(s) 219
BseGI GGATG 2 cut(s) 199, 339
BseLI CCNNNNNNNGG 2 cut(s) 98, 135
BseMI GCAATG 1 cut(s) 433
BseMII CTCAG 1 cut(s) 200
BseRI GAGGAG 1 cut(s) 99
BseXI GCAGC 3 cut(s) 82, 293, 547
BseYI CCCAGC 1 cut(s) 538
BshFI GGCC 2 cut(s) 58, 261
BslI CCNNNNNNNGG 2 cut(s) 98, 135
BsmAI GTCTC 1 cut(s) 449
BsnI GGCC 2 cut(s) 58, 261
Bso31I GGTCTC 1 cut(s) 449
Bsp143I GATC 3 cut(s) 94, 125, 290
Bsp1720I GCTNAGC 1 cut(s) 74
BspACI CCGC 2 cut(s) 59, 330
BspANI GGCC 2 cut(s) 58, 261
BspCNI CTCAG 1 cut(s) 201
BspLI GGNNCC 2 cut(s) 42, 548
BspPI GGATC 2 cut(s) 120, 298
BspQI GCTCTTC 1 cut(s) 179
BspTI CTTAAG 1 cut(s) 17
BspTNI GGTCTC 1 cut(s) 449
BsrBI CCGCTC 1 cut(s) 330
BsrDI GCAATG 1 cut(s) 433
BssECI CCNNGG 1 cut(s) 219
BssMI GATC 3 cut(s) 94, 125, 290
Bst4CI ACNGT 2 cut(s) 37, 134
Bst6I CTCTTC 2 cut(s) 147, 179
BstAFI CTTAAG 1 cut(s) 17
BstC8I GCNNGC 3 cut(s) 45, 279, 593
BstDEI CTNAG 2 cut(s) 74, 209
BstENI CCTNNNNNAGG 1 cut(s) 96
BstF5I GGATG 2 cut(s) 199, 339
BstKTI GATC 3 cut(s) 97, 128, 293
BstMAI GTCTC 1 cut(s) 449
BstMBI GATC 3 cut(s) 94, 125, 290
BstMWI GCNNNNNNNGC 1 cut(s) 67
BstV1I GCAGC 3 cut(s) 82, 293, 547
BstX2I RGATCY 2 cut(s) 125, 290
BstXI CCANNNNNNTGG 1 cut(s) 37
BstYI RGATCY 2 cut(s) 125, 290
Bsu36I CCTNAGG 1 cut(s) 209
BsuRI GGCC 2 cut(s) 58, 261
BtsCI GGATG 2 cut(s) 199, 339
Cac8I GCNNGC 3 cut(s) 45, 279, 593
Cfr13I GGNCC 1 cut(s) 260
Csp6I GTAC 2 cut(s) 89, 205
CviAII CATG 1 cut(s) 386
CviQI GTAC 2 cut(s) 89, 205
DdeI CTNAG 2 cut(s) 74, 209
DpnI GATC 3 cut(s) 96, 127, 292
DpnII GATC 3 cut(s) 94, 125, 290
EaeI YGGCCR 1 cut(s) 56
Eam1104I CTCTTC 2 cut(s) 147, 179
EarI CTCTTC 2 cut(s) 147, 179
Eco31I GGTCTC 1 cut(s) 449
Eco81I CCTNAGG 1 cut(s) 209
EcoNI CCTNNNNNAGG 1 cut(s) 96
EcoRI GAATTC 1 cut(s) 243
FaeI CATG 1 cut(s) 389
FaiI YATR 7 cut(s) 52, 318, 387, 420, 449, 461, 585
FatI CATG 1 cut(s) 385
FauI CCCGC 1 cut(s) 323
FbaI TGATCA 1 cut(s) 94
Fnu4HI GCNGC 4 cut(s) 59, 71, 282, 536
FokI GGATG 2 cut(s) 206, 346
Fsp4HI GCNGC 4 cut(s) 59, 71, 282, 536
FspBI CTAG 3 cut(s) 248, 309, 601
GluI GCNGC 4 cut(s) 59, 71, 282, 536
GsaI CCCAGC 1 cut(s) 542
HaeIII GGCC 2 cut(s) 58, 261
Hin1II CATG 1 cut(s) 389
HincII GTYRAC 1 cut(s) 216
HindII GTYRAC 1 cut(s) 216
HinfI GANTC 1 cut(s) 342
HphI GGTGA 1 cut(s) 382
Hpy166II GTNNAC 2 cut(s) 216, 373
Hpy188I TCNGA 1 cut(s) 556
Hpy8I GTNNAC 2 cut(s) 216, 373
Hpy99I CGWCG 1 cut(s) 84
HpyAV CCTTC 4 cut(s) 101, 489, 517, 537
HpyCH4III ACNGT 2 cut(s) 37, 134
HpyCH4V TGCA 4 cut(s) 47, 143, 281, 535
HpyF10VI GCNNNNNNNGC 1 cut(s) 67
HpyF3I CTNAG 2 cut(s) 74, 209
Hsp92II CATG 1 cut(s) 389
Ksp22I TGATCA 1 cut(s) 94
Kzo9I GATC 3 cut(s) 94, 125, 290
LguI GCTCTTC 1 cut(s) 179
LmnI GCTCC 4 cut(s) 40, 327, 353, 546
LpnPI CCDG 8 cut(s) 57, 105, 213, 221, 243, 258, 417, 524
Lsp1109I GCAGC 3 cut(s) 82, 293, 547
LweI GCATC 1 cut(s) 574
MaeI CTAG 3 cut(s) 248, 309, 601
MalI GATC 3 cut(s) 96, 127, 292
MbiI CCGCTC 1 cut(s) 330
MboI GATC 3 cut(s) 94, 125, 290
MboII GAAGA 3 cut(s) 123, 164, 196
MflI RGATCY 2 cut(s) 125, 290
MluCI AATT 5 cut(s) 23, 102, 234, 243, 469
MlyI GAGTC 1 cut(s) 351
MmeI TCCRAC 3 cut(s) 116, 153, 379
MnlI CCTC 5 cut(s) 77, 148, 204, 214, 273
MseI TTAA 4 cut(s) 18, 237, 269, 473
MspA1I CMGCKG 1 cut(s) 538
MspCI CTTAAG 1 cut(s) 17
MwoI GCNNNNNNNGC 1 cut(s) 67
NdeII GATC 3 cut(s) 94, 125, 290
NlaIII CATG 1 cut(s) 389
NlaIV GGNNCC 2 cut(s) 42, 548
PciSI GCTCTTC 1 cut(s) 179
PflMI CCANNNNNTGG 1 cut(s) 135
PkrI GCNGC 4 cut(s) 60, 72, 283, 537
PleI GAGTC 1 cut(s) 350
PpsI GAGTC 1 cut(s) 350
PspFI CCCAGC 1 cut(s) 538
PspN4I GGNNCC 2 cut(s) 42, 548
PspPI GGNCC 1 cut(s) 260
PsuI RGATCY 2 cut(s) 125, 290
PvuII CAGCTG 1 cut(s) 538
RsaI GTAC 2 cut(s) 90, 206
RsaNI GTAC 2 cut(s) 89, 205
SapI GCTCTTC 1 cut(s) 179
SaqAI TTAA 4 cut(s) 18, 237, 269, 473
SatI GCNGC 4 cut(s) 59, 71, 282, 536
Sau3AI GATC 3 cut(s) 94, 125, 290
Sau96I GGNCC 1 cut(s) 260
SchI GAGTC 1 cut(s) 351
SfaNI GCATC 1 cut(s) 574
SmlI CTYRAG 2 cut(s) 17, 560
SmoI CTYRAG 2 cut(s) 17, 560
Sse9I AATT 5 cut(s) 23, 102, 234, 243, 469
SsiI CCGC 2 cut(s) 59, 330
SspMI CTAG 3 cut(s) 248, 309, 601
TaaI ACNGT 2 cut(s) 37, 134
TaqII GACCGA 1 cut(s) 233
TasI AATT 5 cut(s) 23, 102, 234, 243, 469
TauI GCSGC 1 cut(s) 61
Tru1I TTAA 4 cut(s) 18, 237, 269, 473
Tru9I TTAA 4 cut(s) 18, 237, 269, 473
TseI GCWGC 3 cut(s) 70, 281, 535
TspDTI ATGAA 1 cut(s) 536
Van91I CCANNNNNTGG 1 cut(s) 135
Vha464I CTTAAG 1 cut(s) 17
XagI CCTNNNNNAGG 1 cut(s) 96
XapI RAATTY 3 cut(s) 23, 243, 469
XspI CTAG 3 cut(s) 248, 309, 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.