Rh6AG487500

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0014683
Physical Location & Seq
Reverse (-)
66548132 .. 66548575
444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG487500.1

Sequence Viewer

Length: 444 bp
ATGACAGAGATTGTTGGGGTATTGAAGAGCAAGGATGTGCCAGAGTACCTGAGGTTGACCGAGGTAGCCTTGAAAATTAACAGAATTCTAGCCATTTCTGGCCCTCTTTTAACAGGGCTTGCAGCTTTGGGATCTGCTTTTTTGGGTTCTAGTATTTATGGAGTTTGGAGCGGGATGGTAGGAGTCATTGGGGGAGCTTTGGCAAGTGTGGTGAACACAATAGAGCATGGGGGTCAAGTTGGAATGGTGGTTGAAATGTATAGAAGCAATGCTGGTTTCTTTAGGCTCATACAAGAGACCATAGAAGCAAATTTAAGAGAAAAAGAAGTTGGGAGAAGGGAGAATGGGCAAGTGCTTGAAATGAAGGTGGCTTTGCAGCTGGGAAGGAGCCTATCAGAACTCAAGCATCTTTCTGTCTTTTCTTATGGAAGCAAGCTGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chloroplast_duf

Protein Analysis

147

Amino Acids

15.85

Weight (kDa)

9.0

Isoelectric Point (pI)

31.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroplast_duf PF14476 1 - 135 2.2e-60 Petal formation-expressed
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 171
AciI CCGC 1 cut(s) 171
AclWI GGATC 1 cut(s) 139
AcsI RAATTY 2 cut(s) 84, 310
AfaI GTAC 1 cut(s) 47
AgsI TTSAA 4 cut(s) 25, 73, 254, 359
AjuI GAANNNNNNNTTGG 2 cut(s) 312, 344
AluBI AGCT 4 cut(s) 125, 197, 379, 436
AluI AGCT 4 cut(s) 125, 197, 379, 436
Alw26I GTCTC 1 cut(s) 290
AlwI GGATC 1 cut(s) 139
AoxI GGCC 1 cut(s) 100
ApeKI GCWGC 2 cut(s) 122, 376
ApoI RAATTY 2 cut(s) 84, 310
AspS9I GGNCC 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 223
AxyI CCTNAGG 1 cut(s) 50
BbvI GCAGC 2 cut(s) 134, 388
BccI CCATC 1 cut(s) 169
BcoDI GTCTC 1 cut(s) 290
BfaI CTAG 3 cut(s) 89, 150, 442
BisI GCNGC 2 cut(s) 123, 377
BlsI GCNGC 2 cut(s) 124, 378
BmgT120I GGNCC 1 cut(s) 101
BmiI GGNNCC 1 cut(s) 389
BmsI GCATC 1 cut(s) 415
BpuEI CTTGAG 1 cut(s) 386
BsaI GGTCTC 1 cut(s) 290
BsaJI CCNNGG 1 cut(s) 60
Bse21I CCTNAGG 1 cut(s) 50
Bse3DI GCAATG 1 cut(s) 274
BseDI CCNNGG 1 cut(s) 60
BseGI GGATG 2 cut(s) 40, 180
BseMI GCAATG 1 cut(s) 274
BseMII CTCAG 1 cut(s) 41
BseXI GCAGC 2 cut(s) 134, 388
BseYI CCCAGC 1 cut(s) 379
BshFI GGCC 1 cut(s) 102
BsmAI GTCTC 1 cut(s) 290
BsnI GGCC 1 cut(s) 102
Bso31I GGTCTC 1 cut(s) 290
Bsp143I GATC 1 cut(s) 131
BspACI CCGC 1 cut(s) 171
BspANI GGCC 1 cut(s) 102
BspCNI CTCAG 1 cut(s) 42
BspLI GGNNCC 1 cut(s) 389
BspPI GGATC 1 cut(s) 139
BspQI GCTCTTC 1 cut(s) 20
BspTNI GGTCTC 1 cut(s) 290
BsrBI CCGCTC 1 cut(s) 171
BsrDI GCAATG 1 cut(s) 274
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 1 cut(s) 131
Bst6I CTCTTC 1 cut(s) 20
BstC8I GCNNGC 2 cut(s) 120, 434
BstDEI CTNAG 1 cut(s) 50
BstF5I GGATG 2 cut(s) 40, 180
BstKTI GATC 1 cut(s) 134
BstMAI GTCTC 1 cut(s) 290
BstMBI GATC 1 cut(s) 131
BstV1I GCAGC 2 cut(s) 134, 388
BstX2I RGATCY 1 cut(s) 131
BstYI RGATCY 1 cut(s) 131
Bsu36I CCTNAGG 1 cut(s) 50
BsuRI GGCC 1 cut(s) 102
BtsCI GGATG 2 cut(s) 40, 180
Cac8I GCNNGC 2 cut(s) 120, 434
Cfr13I GGNCC 1 cut(s) 101
Csp6I GTAC 1 cut(s) 46
CviAII CATG 1 cut(s) 227
CviQI GTAC 1 cut(s) 46
DdeI CTNAG 1 cut(s) 50
DpnI GATC 1 cut(s) 133
DpnII GATC 1 cut(s) 131
Eam1104I CTCTTC 1 cut(s) 20
EarI CTCTTC 1 cut(s) 20
Eco31I GGTCTC 1 cut(s) 290
Eco81I CCTNAGG 1 cut(s) 50
EcoRI GAATTC 1 cut(s) 84
FaeI CATG 1 cut(s) 230
FaiI YATR 6 cut(s) 159, 228, 261, 290, 302, 426
FatI CATG 1 cut(s) 226
FauI CCCGC 1 cut(s) 164
Fnu4HI GCNGC 2 cut(s) 123, 377
FokI GGATG 2 cut(s) 47, 187
Fsp4HI GCNGC 2 cut(s) 123, 377
FspBI CTAG 3 cut(s) 89, 150, 442
GluI GCNGC 2 cut(s) 123, 377
GsaI CCCAGC 1 cut(s) 383
HaeIII GGCC 1 cut(s) 102
Hin1II CATG 1 cut(s) 230
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HinfI GANTC 1 cut(s) 183
HphI GGTGA 1 cut(s) 223
Hpy166II GTNNAC 2 cut(s) 57, 214
Hpy188I TCNGA 1 cut(s) 397
Hpy8I GTNNAC 2 cut(s) 57, 214
HpyAV CCTTC 3 cut(s) 330, 358, 378
HpyCH4V TGCA 2 cut(s) 122, 376
HpyF3I CTNAG 1 cut(s) 50
Hsp92II CATG 1 cut(s) 230
Kzo9I GATC 1 cut(s) 131
LguI GCTCTTC 1 cut(s) 20
LmnI GCTCC 3 cut(s) 168, 194, 387
LpnPI CCDG 6 cut(s) 54, 62, 84, 99, 258, 365
Lsp1109I GCAGC 2 cut(s) 134, 388
LweI GCATC 1 cut(s) 415
MaeI CTAG 3 cut(s) 89, 150, 442
MalI GATC 1 cut(s) 133
MbiI CCGCTC 1 cut(s) 171
MboI GATC 1 cut(s) 131
MboII GAAGA 1 cut(s) 37
MflI RGATCY 1 cut(s) 131
MluCI AATT 3 cut(s) 75, 84, 310
MlyI GAGTC 1 cut(s) 192
MmeI TCCRAC 1 cut(s) 220
MnlI CCTC 3 cut(s) 45, 55, 114
MseI TTAA 3 cut(s) 78, 110, 314
MspA1I CMGCKG 1 cut(s) 379
NdeII GATC 1 cut(s) 131
NlaIII CATG 1 cut(s) 230
NlaIV GGNNCC 1 cut(s) 389
PciSI GCTCTTC 1 cut(s) 20
PkrI GCNGC 2 cut(s) 124, 378
PleI GAGTC 1 cut(s) 191
PpsI GAGTC 1 cut(s) 191
PspFI CCCAGC 1 cut(s) 379
PspN4I GGNNCC 1 cut(s) 389
PspPI GGNCC 1 cut(s) 101
PsuI RGATCY 1 cut(s) 131
PvuII CAGCTG 1 cut(s) 379
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
SapI GCTCTTC 1 cut(s) 20
SaqAI TTAA 3 cut(s) 78, 110, 314
SatI GCNGC 2 cut(s) 123, 377
Sau3AI GATC 1 cut(s) 131
Sau96I GGNCC 1 cut(s) 101
SchI GAGTC 1 cut(s) 192
SetI ASST 8 cut(s) 51, 56, 66, 127, 199, 369, 381, 438
SfaNI GCATC 1 cut(s) 415
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
Sse9I AATT 3 cut(s) 75, 84, 310
SsiI CCGC 1 cut(s) 171
SspMI CTAG 3 cut(s) 89, 150, 442
TaqII GACCGA 1 cut(s) 74
TasI AATT 3 cut(s) 75, 84, 310
Tru1I TTAA 3 cut(s) 78, 110, 314
Tru9I TTAA 3 cut(s) 78, 110, 314
TseI GCWGC 2 cut(s) 122, 376
TspDTI ATGAA 1 cut(s) 377
XapI RAATTY 2 cut(s) 84, 310
XspI CTAG 3 cut(s) 89, 150, 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.