FvH4_3g02550

Nuclear transport factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
1282882 .. 1283827
946 bp
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UTR
Exon/CDS
Intron
FvH4_3g02550.t1

Sequence Viewer

Length: 378 bp
ATGGAAGAACAAGTCGAAATGGTGGGGAGGGCATTTGTGGATCATTATTACCTTCTTTTTGACAGTGATAGAGCTTCCCTCTCTGCTCTATATCAACCAACCTCTATGTTGAGCTTTGAGGGCCAAAAGATTTTTGGGGTTGACGATATTTCTGCCAAGCTTAATCAGTTGCCTTTTGATCAATGCAAGCATCTGATCAGTACTGTCGATTCCCAGCCATCATCGACAACCGGTGGCATTGTGGTCTTTGTCAGTGGCAGCCTCCAATTATCGGGGGAAGAACACCTCCTAAGATTTAGTCAGATGTTCCACTTGATTCCGACTCCACAGGGAAGCTTCTTTGTCCAGAATGATATATTTCGTCTGAATTATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

126

Amino Acids

14.04

Weight (kDa)

4.78

Isoelectric Point (pI)

33.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTF2 PF02136 8 - 122 3.6e-34 Nuclear transport factor 2 (NTF2) domain
NXF_NTF2 PF22602 10 - 40 9.9e-06 Nuclear RNA export factor, NTF2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 48
AfaI GTAC 1 cut(s) 202
AfiI CCNNNNNNNGG 1 cut(s) 271
AgeI ACCGGT 1 cut(s) 230
AluBI AGCT 4 cut(s) 74, 114, 160, 336
AluI AGCT 4 cut(s) 74, 114, 160, 336
AlwI GGATC 1 cut(s) 48
AoxI GGCC 1 cut(s) 121
ApeKI GCWGC 1 cut(s) 258
AsiGI ACCGGT 1 cut(s) 230
AspS9I GGNCC 1 cut(s) 121
BbvI GCAGC 1 cut(s) 270
BccI CCATC 1 cut(s) 226
BcgI CGANNNNNNTGC 2 cut(s) 134, 168
BclI TGATCA 2 cut(s) 178, 195
BisI GCNGC 1 cut(s) 259
BlsI GCNGC 1 cut(s) 260
BmcAI AGTACT 1 cut(s) 202
BmgT120I GGNCC 1 cut(s) 121
BmsI GCATC 1 cut(s) 199
BplI GAGNNNNNCTC 2 cut(s) 63, 95
BsaWI WCCGGW 1 cut(s) 230
Bsc4I CCNNNNNNNGG 1 cut(s) 271
Bse118I RCCGGY 1 cut(s) 230
BseLI CCNNNNNNNGG 1 cut(s) 271
BseXI GCAGC 1 cut(s) 270
BseYI CCCAGC 1 cut(s) 213
BshFI GGCC 1 cut(s) 123
BshTI ACCGGT 1 cut(s) 230
BsiSI CCGG 1 cut(s) 231
BslI CCNNNNNNNGG 1 cut(s) 271
BsnI GGCC 1 cut(s) 123
Bsp143I GATC 3 cut(s) 40, 178, 195
BspANI GGCC 1 cut(s) 123
BspPI GGATC 1 cut(s) 48
BsrFI RCCGGY 1 cut(s) 230
BssAI RCCGGY 1 cut(s) 230
BssMI GATC 3 cut(s) 40, 178, 195
Bst4CI ACNGT 2 cut(s) 65, 205
BstC8I GCNNGC 1 cut(s) 188
BstDEI CTNAG 1 cut(s) 290
BstKTI GATC 3 cut(s) 43, 181, 198
BstMBI GATC 3 cut(s) 40, 178, 195
BstMWI GCNNNNNNNGC 1 cut(s) 120
BstV1I GCAGC 1 cut(s) 270
BsuRI GGCC 1 cut(s) 123
BtsIMutI CAGTG 2 cut(s) 70, 259
Cac8I GCNNGC 1 cut(s) 188
Cfr10I RCCGGY 1 cut(s) 230
Cfr13I GGNCC 1 cut(s) 121
Csp6I GTAC 1 cut(s) 201
CspAI ACCGGT 1 cut(s) 230
CviJI RGCY 7 cut(s) 74, 114, 123, 160, 217, 261, 336
CviKI_1 RGCY 7 cut(s) 74, 114, 123, 160, 217, 261, 336
CviQI GTAC 1 cut(s) 201
DdeI CTNAG 1 cut(s) 290
DpnI GATC 3 cut(s) 42, 180, 197
DpnII GATC 3 cut(s) 40, 178, 195
FaiI YATR 4 cut(s) 91, 107, 356, 372
FbaI TGATCA 2 cut(s) 178, 195
Fnu4HI GCNGC 1 cut(s) 259
Fsp4HI GCNGC 1 cut(s) 259
GluI GCNGC 1 cut(s) 259
GsaI CCCAGC 1 cut(s) 217
HaeIII GGCC 1 cut(s) 123
HapII CCGG 1 cut(s) 231
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HindIII AAGCTT 2 cut(s) 158, 334
HinfI GANTC 3 cut(s) 209, 316, 322
HpaII CCGG 1 cut(s) 231
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 4 cut(s) 195, 303, 321, 366
Hpy188III TCNNGA 1 cut(s) 346
Hpy8I GTNNAC 1 cut(s) 142
HpyAV CCTTC 1 cut(s) 62
HpyCH4III ACNGT 2 cut(s) 65, 205
HpyCH4V TGCA 1 cut(s) 186
HpyF10VI GCNNNNNNNGC 1 cut(s) 120
HpyF3I CTNAG 1 cut(s) 290
Ksp22I TGATCA 2 cut(s) 178, 195
Kzo9I GATC 3 cut(s) 40, 178, 195
LpnPI CCDG 4 cut(s) 227, 244, 314, 359
Lsp1109I GCAGC 1 cut(s) 270
LweI GCATC 1 cut(s) 199
MalI GATC 3 cut(s) 42, 180, 197
MboI GATC 3 cut(s) 40, 178, 195
MboII GAAGA 2 cut(s) 17, 290
MluCI AATT 2 cut(s) 266, 367
MlyI GAGTC 1 cut(s) 316
MmeI TCCRAC 1 cut(s) 344
MnlI CCTC 6 cut(s) 21, 89, 112, 112, 272, 296
MseI TTAA 2 cut(s) 162, 376
MspI CCGG 1 cut(s) 231
MwoI GCNNNNNNNGC 1 cut(s) 120
NdeII GATC 3 cut(s) 40, 178, 195
PfeI GAWTC 2 cut(s) 209, 316
PinAI ACCGGT 1 cut(s) 230
PkrI GCNGC 1 cut(s) 260
PleI GAGTC 1 cut(s) 316
PpsI GAGTC 1 cut(s) 316
PspFI CCCAGC 1 cut(s) 213
PspPI GGNCC 1 cut(s) 121
RsaI GTAC 1 cut(s) 202
RsaNI GTAC 1 cut(s) 201
SaqAI TTAA 2 cut(s) 162, 376
SatI GCNGC 1 cut(s) 259
Sau3AI GATC 3 cut(s) 40, 178, 195
Sau96I GGNCC 1 cut(s) 121
ScaI AGTACT 1 cut(s) 202
SchI GAGTC 1 cut(s) 316
SetI ASST 7 cut(s) 54, 76, 104, 116, 162, 288, 338
SfaNI GCATC 1 cut(s) 199
SgeI CNNG 9 cut(s) 23, 169, 199, 226, 243, 285, 325, 341, 358
Sse9I AATT 2 cut(s) 266, 367
TaaI ACNGT 2 cut(s) 65, 205
TaqI TCGA 3 cut(s) 15, 207, 224
TasI AATT 2 cut(s) 266, 367
TatI WGTACW 1 cut(s) 200
TfiI GAWTC 2 cut(s) 209, 316
Tru1I TTAA 2 cut(s) 162, 376
Tru9I TTAA 2 cut(s) 162, 376
TscAI CASTG 2 cut(s) 70, 259
TseI GCWGC 1 cut(s) 258
TspRI CASTG 2 cut(s) 70, 259
XcmI CCANNNNNNNNNTGG 1 cut(s) 131
ZrmI AGTACT 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.