Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0009057

Physical Location & Seq

Genomic Coordinates Reverse (-)

2409075 .. 2412099

Gene Structure 3025 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG037600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGAAGAACAAGTCGAAATGGTGGGGAGGGCATTTGTGGATCATTATTACCTTCTTTTTGACAGTGATAGAGCTTCCCTGTCTACTCTATATCAACCAACCTCTATGTTGAGCTTTGAGGGCCAAAAGATTTTTGGGGTTGACGATATTTCTGTGAAGCTTAATCAGTTGCCATTCGATCTATGCAAGCATCTGATCAGTACTATCGATTCCCAGCCATCATCGACAACCGGTGGCATTGTGGTCTTTGTCAGCGGCAGCCTCCAATTACCGGGGGAAGAACACCTTCTAAGATTTAGCCAGGTTATAATTTTCACAACTCTCCACATTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTF2

Protein Analysis

111

Amino Acids

12.49

Weight (kDa)

4.75

Isoelectric Point (pI)

42.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTF2	PF02136	8 - 105	9.9e-24	Nuclear transport factor 2 (NTF2) domain
NXF_NTF2	PF22602	10 - 40	8.1e-06	Nuclear RNA export factor, NTF2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11570 AT1G11570 AT1G11570 AT1G11570 AT1G27970 AT1G27970
fragaria_vesca	FvH4_3g02550
malus_domestica	MD05G1341700.v1.1 MD10G1315300.v1.1
prunus_persica	Prupe.4G025300_v2.0.a1
pyrus_communis	pycom10g26760
rosa_chinensis	RchiOBHm_Chr5g0003881
rosa_laevigata	RLG00000031186
rosa_multiflora	Rmu_sc0011733.1_g000005 Rmu_sc0019391.1_g000008
rosa_roxburghii	Rroxscaffold_1G00072080
rosa_rugosa	Rorug04G0407700
rosa_samantha	Rh5AG035200 Rh5BG033700 Rh5CG037600 Rh5DG033900
rosa_wichuraiana	Rw5G003220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	308
AccI	GTMKAC	1 cut(s)	83
AciI	CCGC	1 cut(s)	255
AclWI	GGATC	1 cut(s)	48
AfaI	GTAC	1 cut(s)	202
AfiI	CCNNNNNNNGG	1 cut(s)	271
AgeI	ACCGGT	1 cut(s)	230
AjnI	CCWGG	1 cut(s)	300
AluBI	AGCT	3 cut(s)	74, 114, 160
AluI	AGCT	3 cut(s)	74, 114, 160
AlwI	GGATC	1 cut(s)	48
AoxI	GGCC	1 cut(s)	121
ApeKI	GCWGC	1 cut(s)	258
AsiGI	ACCGGT	1 cut(s)	230
Asp700I	GAANNNNTTC	1 cut(s)	285
AspS9I	GGNCC	1 cut(s)	121
AsuC2I	CCSGG	1 cut(s)	273
BbvI	GCAGC	1 cut(s)	270
BccI	CCATC	1 cut(s)	226
BciT130I	CCWGG	1 cut(s)	302
BclI	TGATCA	1 cut(s)	195
BcnI	CCSGG	1 cut(s)	273
BfaI	CTAG	1 cut(s)	334
BisI	GCNGC	2 cut(s)	256, 259
BlsI	GCNGC	2 cut(s)	257, 260
BmcAI	AGTACT	1 cut(s)	202
Bme1390I	CCNGG	2 cut(s)	273, 302
BmgT120I	GGNCC	1 cut(s)	121
BmrFI	CCNGG	2 cut(s)	273, 302
BmsI	GCATC	1 cut(s)	199
BpuMI	CCSGG	1 cut(s)	273
Bsa29I	ATCGAT	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	272
BsaWI	WCCGGW	1 cut(s)	230
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
Bse118I	RCCGGY	1 cut(s)	230
BseBI	CCWGG	1 cut(s)	302
BseCI	ATCGAT	1 cut(s)	207
BseDI	CCNNGG	1 cut(s)	272
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseXI	GCAGC	1 cut(s)	270
BseYI	CCCAGC	1 cut(s)	213
BshFI	GGCC	1 cut(s)	123
BshTI	ACCGGT	1 cut(s)	230
BshVI	ATCGAT	1 cut(s)	207
BsiSI	CCGG	2 cut(s)	231, 272
BslI	CCNNNNNNNGG	1 cut(s)	271
BsnI	GGCC	1 cut(s)	123
Bsp143I	GATC	3 cut(s)	40, 178, 195
BspACI	CCGC	1 cut(s)	255
BspANI	GGCC	1 cut(s)	123
BspDI	ATCGAT	1 cut(s)	207
BspPI	GGATC	1 cut(s)	48
BsrFI	RCCGGY	1 cut(s)	230
BssAI	RCCGGY	1 cut(s)	230
BssECI	CCNNGG	1 cut(s)	272
BssMI	GATC	3 cut(s)	40, 178, 195
Bst2UI	CCWGG	1 cut(s)	302
Bst4CI	ACNGT	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	188
BstDEI	CTNAG	1 cut(s)	290
BstKTI	GATC	3 cut(s)	43, 181, 198
BstMBI	GATC	3 cut(s)	40, 178, 195
BstMWI	GCNNNNNNNGC	1 cut(s)	120
BstNI	CCWGG	1 cut(s)	302
BstSCI	CCNGG	2 cut(s)	271, 300
BstV1I	GCAGC	1 cut(s)	270
Bsu15I	ATCGAT	1 cut(s)	207
BsuRI	GGCC	1 cut(s)	123
BsuTUI	ATCGAT	1 cut(s)	207
BtsIMutI	CAGTG	1 cut(s)	70
Cac8I	GCNNGC	1 cut(s)	188
Cfr10I	RCCGGY	1 cut(s)	230
Cfr13I	GGNCC	1 cut(s)	121
ClaI	ATCGAT	1 cut(s)	207
Csp6I	GTAC	1 cut(s)	201
CspAI	ACCGGT	1 cut(s)	230
CviJI	RGCY	7 cut(s)	74, 114, 123, 160, 217, 261, 300
CviKI_1	RGCY	7 cut(s)	74, 114, 123, 160, 217, 261, 300
CviQI	GTAC	1 cut(s)	201
DdeI	CTNAG	1 cut(s)	290
DpnI	GATC	3 cut(s)	42, 180, 197
DpnII	GATC	3 cut(s)	40, 178, 195
EcoRII	CCWGG	1 cut(s)	300
FaiI	YATR	4 cut(s)	91, 107, 184, 308
FalI	AAGNNNNNCTT	2 cut(s)	270, 302
FbaI	TGATCA	1 cut(s)	195
FblI	GTMKAC	1 cut(s)	83
Fnu4HI	GCNGC	2 cut(s)	256, 259
Fsp4HI	GCNGC	2 cut(s)	256, 259
FspBI	CTAG	1 cut(s)	334
GluI	GCNGC	2 cut(s)	256, 259
GsaI	CCCAGC	1 cut(s)	217
HaeIII	GGCC	1 cut(s)	123
HapII	CCGG	2 cut(s)	231, 272
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	1 cut(s)	209
HpaII	CCGG	2 cut(s)	231, 272
Hpy166II	GTNNAC	2 cut(s)	84, 142
Hpy188I	TCNGA	1 cut(s)	195
Hpy8I	GTNNAC	2 cut(s)	84, 142
HpyAV	CCTTC	2 cut(s)	62, 296
HpyCH4III	ACNGT	1 cut(s)	65
HpyCH4V	TGCA	1 cut(s)	186
HpyF10VI	GCNNNNNNNGC	1 cut(s)	120
HpyF3I	CTNAG	1 cut(s)	290
Ksp22I	TGATCA	1 cut(s)	195
Kzo9I	GATC	3 cut(s)	40, 178, 195
LpnPI	CCDG	6 cut(s)	92, 227, 244, 285, 287, 314
Lsp1109I	GCAGC	1 cut(s)	270
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	1 cut(s)	334
MalI	GATC	3 cut(s)	42, 180, 197
MboI	GATC	3 cut(s)	40, 178, 195
MboII	GAAGA	2 cut(s)	17, 290
MluCI	AATT	2 cut(s)	266, 309
MnlI	CCTC	4 cut(s)	21, 112, 112, 272
MroXI	GAANNNNTTC	1 cut(s)	285
MseI	TTAA	1 cut(s)	162
MspA1I	CMGCKG	1 cut(s)	255
MspI	CCGG	2 cut(s)	231, 272
MspR9I	CCNGG	2 cut(s)	273, 302
MvaI	CCWGG	1 cut(s)	302
MwoI	GCNNNNNNNGC	1 cut(s)	120
NciI	CCSGG	1 cut(s)	273
NdeII	GATC	3 cut(s)	40, 178, 195
PdmI	GAANNNNTTC	1 cut(s)	285
PfeI	GAWTC	1 cut(s)	209
PinAI	ACCGGT	1 cut(s)	230
PkrI	GCNGC	2 cut(s)	257, 260
PsiI	TTATAA	1 cut(s)	308
Psp6I	CCWGG	1 cut(s)	300
PspFI	CCCAGC	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	300
PspPI	GGNCC	1 cut(s)	121
RsaI	GTAC	1 cut(s)	202
RsaNI	GTAC	1 cut(s)	201
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	2 cut(s)	256, 259
Sau3AI	GATC	3 cut(s)	40, 178, 195
Sau96I	GGNCC	1 cut(s)	121
ScaI	AGTACT	1 cut(s)	202
ScrFI	CCNGG	2 cut(s)	273, 302
SetI	ASST	7 cut(s)	54, 76, 104, 116, 162, 288, 306
SfaNI	GCATC	1 cut(s)	199
SgeI	CNNG	9 cut(s)	23, 91, 199, 226, 243, 284, 285, 313, 314
Sse9I	AATT	2 cut(s)	266, 309
SsiI	CCGC	1 cut(s)	255
SspMI	CTAG	1 cut(s)	334
StyD4I	CCNGG	2 cut(s)	271, 300
TaaI	ACNGT	1 cut(s)	65
TaqI	TCGA	4 cut(s)	15, 177, 207, 224
TasI	AATT	2 cut(s)	266, 309
TatI	WGTACW	1 cut(s)	200
TauI	GCSGC	1 cut(s)	258
TfiI	GAWTC	1 cut(s)	209
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TscAI	CASTG	1 cut(s)	70
TseI	GCWGC	1 cut(s)	258
TspRI	CASTG	1 cut(s)	70
XcmI	CCANNNNNNNNNTGG	1 cut(s)	131
XmiI	GTMKAC	1 cut(s)	83
XmnI	GAANNNNTTC	1 cut(s)	285
XspI	CTAG	1 cut(s)	334
ZrmI	AGTACT	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.