Rmu_sc0011733.1_g000005

Nuclear transport factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011733.1
OG0009057
Physical Location & Seq
Forward (+)
12426 .. 12844
419 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011733.1_g000005.1.cds

Sequence Viewer

Length: 339 bp
atgaagattcaaaagagtcagatttcaccatattggctgaaatgcagtcaagatctctacacctctatgttgagctttgagggccaaaagatttttggggttgacgatatttctgtgaagcttaatcagttgccattcgatctatgcaagcatctgatcagtactatcgattcccagccatcatcgacaaccggtggcattgtggtctttgtcagcggcagcctccaattaccgggggaagaacaccttctaagatttagccagatgttccacttgattccaactccacaaggaagcttctttgtccagaatgatatatttcgtctgaattatggttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NTF2

Protein Analysis

112

Amino Acids

12.66

Weight (kDa)

6.24

Isoelectric Point (pI)

35.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 216
AfaI GTAC 1 cut(s) 163
AfiI CCNNNNNNNGG 1 cut(s) 232
AgeI ACCGGT 1 cut(s) 191
AgsI TTSAA 1 cut(s) 11
AluBI AGCT 3 cut(s) 75, 121, 297
AluI AGCT 3 cut(s) 75, 121, 297
AoxI GGCC 1 cut(s) 82
ApeKI GCWGC 1 cut(s) 219
AsiGI ACCGGT 1 cut(s) 191
Asp700I GAANNNNTTC 1 cut(s) 246
AspS9I GGNCC 1 cut(s) 82
AsuC2I CCSGG 1 cut(s) 234
AsuHPI GGTGA 1 cut(s) 18
BbvI GCAGC 1 cut(s) 231
BccI CCATC 1 cut(s) 187
BclI TGATCA 1 cut(s) 156
BcnI CCSGG 1 cut(s) 234
BglII AGATCT 1 cut(s) 52
BisI GCNGC 2 cut(s) 217, 220
BlsI GCNGC 2 cut(s) 218, 221
BmcAI AGTACT 1 cut(s) 163
Bme1390I CCNGG 1 cut(s) 234
BmgT120I GGNCC 1 cut(s) 82
BmrFI CCNGG 1 cut(s) 234
BmsI GCATC 1 cut(s) 160
BpuMI CCSGG 1 cut(s) 234
Bsa29I ATCGAT 1 cut(s) 168
BsaJI CCNNGG 1 cut(s) 233
BsaWI WCCGGW 1 cut(s) 191
Bsc4I CCNNNNNNNGG 1 cut(s) 232
Bse118I RCCGGY 1 cut(s) 191
BseCI ATCGAT 1 cut(s) 168
BseDI CCNNGG 1 cut(s) 233
BseLI CCNNNNNNNGG 1 cut(s) 232
BseXI GCAGC 1 cut(s) 231
BseYI CCCAGC 1 cut(s) 174
BshFI GGCC 1 cut(s) 84
BshTI ACCGGT 1 cut(s) 191
BshVI ATCGAT 1 cut(s) 168
BsiSI CCGG 2 cut(s) 192, 233
BslI CCNNNNNNNGG 1 cut(s) 232
BsnI GGCC 1 cut(s) 84
Bsp143I GATC 3 cut(s) 52, 139, 156
BspACI CCGC 1 cut(s) 216
BspANI GGCC 1 cut(s) 84
BspDI ATCGAT 1 cut(s) 168
BsrFI RCCGGY 1 cut(s) 191
BssAI RCCGGY 1 cut(s) 191
BssECI CCNNGG 1 cut(s) 233
BssMI GATC 3 cut(s) 52, 139, 156
BstC8I GCNNGC 1 cut(s) 149
BstDEI CTNAG 1 cut(s) 251
BstKTI GATC 3 cut(s) 55, 142, 159
BstMBI GATC 3 cut(s) 52, 139, 156
BstMWI GCNNNNNNNGC 1 cut(s) 81
BstSCI CCNGG 1 cut(s) 232
BstV1I GCAGC 1 cut(s) 231
BstX2I RGATCY 1 cut(s) 52
BstYI RGATCY 1 cut(s) 52
Bsu15I ATCGAT 1 cut(s) 168
BsuRI GGCC 1 cut(s) 84
BsuTUI ATCGAT 1 cut(s) 168
Cac8I GCNNGC 1 cut(s) 149
Cfr10I RCCGGY 1 cut(s) 191
Cfr13I GGNCC 1 cut(s) 82
ClaI ATCGAT 1 cut(s) 168
Csp6I GTAC 1 cut(s) 162
CspAI ACCGGT 1 cut(s) 191
CviJI RGCY 8 cut(s) 37, 75, 84, 121, 178, 222, 261, 297
CviKI_1 RGCY 8 cut(s) 37, 75, 84, 121, 178, 222, 261, 297
CviQI GTAC 1 cut(s) 162
DdeI CTNAG 1 cut(s) 251
DpnI GATC 3 cut(s) 54, 141, 158
DpnII GATC 3 cut(s) 52, 139, 156
FaiI YATR 5 cut(s) 31, 68, 145, 317, 333
FalI AAGNNNNNCTT 2 cut(s) 231, 263
FbaI TGATCA 1 cut(s) 156
Fnu4HI GCNGC 2 cut(s) 217, 220
Fsp4HI GCNGC 2 cut(s) 217, 220
GluI GCNGC 2 cut(s) 217, 220
GsaI CCCAGC 1 cut(s) 178
HaeIII GGCC 1 cut(s) 84
HapII CCGG 2 cut(s) 192, 233
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HindIII AAGCTT 2 cut(s) 119, 295
HinfI GANTC 4 cut(s) 7, 16, 170, 277
HpaII CCGG 2 cut(s) 192, 233
HphI GGTGA 1 cut(s) 18
Hpy166II GTNNAC 1 cut(s) 103
Hpy188I TCNGA 3 cut(s) 21, 156, 327
Hpy188III TCNNGA 2 cut(s) 50, 307
Hpy8I GTNNAC 1 cut(s) 103
HpyAV CCTTC 1 cut(s) 257
HpyCH4V TGCA 2 cut(s) 45, 147
HpyF10VI GCNNNNNNNGC 1 cut(s) 81
HpyF3I CTNAG 1 cut(s) 251
Ksp22I TGATCA 1 cut(s) 156
Kzo9I GATC 3 cut(s) 52, 139, 156
LpnPI CCDG 5 cut(s) 188, 205, 246, 275, 320
Lsp1109I GCAGC 1 cut(s) 231
LweI GCATC 1 cut(s) 160
MalI GATC 3 cut(s) 54, 141, 158
MboI GATC 3 cut(s) 52, 139, 156
MboII GAAGA 2 cut(s) 16, 251
MflI RGATCY 1 cut(s) 52
MluCI AATT 2 cut(s) 227, 328
MlyI GAGTC 1 cut(s) 25
MmeI TCCRAC 1 cut(s) 305
MnlI CCTC 3 cut(s) 73, 73, 233
MroXI GAANNNNTTC 1 cut(s) 246
MseI TTAA 2 cut(s) 123, 337
MslI CAYNNNNRTG 1 cut(s) 65
MspA1I CMGCKG 1 cut(s) 216
MspI CCGG 2 cut(s) 192, 233
MspR9I CCNGG 1 cut(s) 234
MwoI GCNNNNNNNGC 1 cut(s) 81
NciI CCSGG 1 cut(s) 234
NdeII GATC 3 cut(s) 52, 139, 156
PdmI GAANNNNTTC 1 cut(s) 246
PfeI GAWTC 3 cut(s) 7, 170, 277
PinAI ACCGGT 1 cut(s) 191
PkrI GCNGC 2 cut(s) 218, 221
PleI GAGTC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 24
PspFI CCCAGC 1 cut(s) 174
PspPI GGNCC 1 cut(s) 82
PsuI RGATCY 1 cut(s) 52
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
RseI CAYNNNNRTG 1 cut(s) 65
SaqAI TTAA 2 cut(s) 123, 337
SatI GCNGC 2 cut(s) 217, 220
Sau3AI GATC 3 cut(s) 52, 139, 156
Sau96I GGNCC 1 cut(s) 82
ScaI AGTACT 1 cut(s) 163
SchI GAGTC 1 cut(s) 25
ScrFI CCNGG 1 cut(s) 234
SetI ASST 5 cut(s) 65, 77, 123, 249, 299
SfaNI GCATC 1 cut(s) 160
SmiMI CAYNNNNRTG 1 cut(s) 65
Sse9I AATT 2 cut(s) 227, 328
SsiI CCGC 1 cut(s) 216
StyD4I CCNGG 1 cut(s) 232
TaqI TCGA 3 cut(s) 138, 168, 185
TasI AATT 2 cut(s) 227, 328
TatI WGTACW 1 cut(s) 161
TauI GCSGC 1 cut(s) 219
TfiI GAWTC 3 cut(s) 7, 170, 277
Tru1I TTAA 2 cut(s) 123, 337
Tru9I TTAA 2 cut(s) 123, 337
TseI GCWGC 1 cut(s) 219
TspDTI ATGAA 1 cut(s) 17
XcmI CCANNNNNNNNNTGG 1 cut(s) 92
XmnI GAANNNNTTC 1 cut(s) 246
ZrmI AGTACT 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.