Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0009057

Physical Location & Seq

Genomic Coordinates Forward (+)

39910388 .. 39911099

Gene Structure 712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1315300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGAGGAGCAGGCTGAAATGGTGGGGAGGGCATTTGTGGATCACTACTACCATTTATTTGACACTGATAGAGCTTCCCTTTCCTCCCTTTACCAGCCTTCCTCTATGCTGAGCTTTGAGGGGCAGAAGTTATTTGGCGCTAATGATATATCTTCCAAGCTTAATCAGCTGCCGTTTGATCAATGCAAGCATTTGATCAGCACCATTGATTCGCAGCCATCGTCCCCAAGTGGCGGCATTGTGGTCTTCGTCAGCGGCAGCCTCGAGTTACCGGGAGAAGAACACCACCTGAGATTCAGCCAGATGTTCCACTTGATTCCCACTCCAGAAGGAACCTTCTTTGTGCAGAACGACATATTTCGACTCAATTATGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTF2

Protein Analysis

126

Amino Acids

14.09

Weight (kDa)

4.99

Isoelectric Point (pI)

44.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTF2	PF02136	8 - 122	3.8e-33	Nuclear transport factor 2 (NTF2) domain
NXF_NTF2	PF22602	10 - 40	4.8e-06	Nuclear RNA export factor, NTF2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11570 AT1G11570 AT1G11570 AT1G11570 AT1G27970 AT1G27970
fragaria_vesca	FvH4_3g02550
malus_domestica	MD05G1341700.v1.1 MD10G1315300.v1.1
prunus_persica	Prupe.4G025300_v2.0.a1
pyrus_communis	pycom10g26760
rosa_chinensis	RchiOBHm_Chr5g0003881
rosa_laevigata	RLG00000031186
rosa_multiflora	Rmu_sc0011733.1_g000005 Rmu_sc0019391.1_g000008
rosa_roxburghii	Rroxscaffold_1G00072080
rosa_rugosa	Rorug04G0407700
rosa_samantha	Rh5AG035200 Rh5BG033700 Rh5CG037600 Rh5DG033900
rosa_wichuraiana	Rw5G003220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	234, 255
AclWI	GGATC	1 cut(s)	48
AfiI	CCNNNNNNNGG	1 cut(s)	233
AluBI	AGCT	4 cut(s)	74, 114, 160, 169
AluI	AGCT	4 cut(s)	74, 114, 160, 169
AlwI	GGATC	1 cut(s)	48
Ama87I	CYCGRG	1 cut(s)	263
ApeKI	GCWGC	3 cut(s)	169, 214, 258
AspLEI	GCGC	1 cut(s)	140
AsuC2I	CCSGG	1 cut(s)	273
AvaI	CYCGRG	1 cut(s)	263
BbsI	GAAGAC	1 cut(s)	238
BbvI	GCAGC	3 cut(s)	156, 226, 270
BccI	CCATC	1 cut(s)	226
BceAI	ACGGC	1 cut(s)	157
BclI	TGATCA	2 cut(s)	178, 195
BcnI	CCSGG	1 cut(s)	273
BfoI	RGCGCY	1 cut(s)	141
BisI	GCNGC	5 cut(s)	170, 215, 235, 256, 259
BlpI	GCTNAGC	1 cut(s)	110
BlsI	GCNGC	5 cut(s)	171, 216, 236, 257, 260
Bme1390I	CCNGG	1 cut(s)	273
BmeT110I	CYCGRG	1 cut(s)	263
BmiI	GGNNCC	1 cut(s)	334
BmrFI	CCNGG	1 cut(s)	273
BpiI	GAAGAC	1 cut(s)	238
BpmI	CTGGAG	1 cut(s)	309
Bpu1102I	GCTNAGC	1 cut(s)	110
BpuMI	CCSGG	1 cut(s)	273
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseMII	CTCAG	2 cut(s)	101, 281
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	3 cut(s)	156, 226, 270
BsgI	GTGCAG	1 cut(s)	365
BsiHKCI	CYCGRG	1 cut(s)	263
BsiSI	CCGG	1 cut(s)	272
BslFI	GGGAC	1 cut(s)	208
BslI	CCNNNNNNNGG	1 cut(s)	233
BsmFI	GGGAC	1 cut(s)	208
BsoBI	CYCGRG	1 cut(s)	263
Bsp143I	GATC	3 cut(s)	40, 178, 195
Bsp1720I	GCTNAGC	1 cut(s)	110
BspACI	CCGC	2 cut(s)	234, 255
BspCNI	CTCAG	2 cut(s)	102, 282
BspLI	GGNNCC	1 cut(s)	334
BspPI	GGATC	1 cut(s)	48
BssMI	GATC	3 cut(s)	40, 178, 195
BstC8I	GCNNGC	2 cut(s)	12, 188
BstDEI	CTNAG	2 cut(s)	110, 290
BstH2I	RGCGCY	1 cut(s)	141
BstHHI	GCGC	1 cut(s)	140
BstKTI	GATC	3 cut(s)	43, 181, 198
BstMBI	GATC	3 cut(s)	40, 178, 195
BstMWI	GCNNNNNNNGC	1 cut(s)	166
BstSCI	CCNGG	1 cut(s)	271
BstV1I	GCAGC	3 cut(s)	156, 226, 270
BstV2I	GAAGAC	1 cut(s)	238
BtsIMutI	CAGTG	1 cut(s)	63
Cac8I	GCNNGC	2 cut(s)	12, 188
CfoI	GCGC	1 cut(s)	140
CviJI	RGCY	9 cut(s)	14, 74, 97, 114, 160, 169, 217, 261, 300
CviKI_1	RGCY	9 cut(s)	14, 74, 97, 114, 160, 169, 217, 261, 300
DdeI	CTNAG	2 cut(s)	110, 290
DpnI	GATC	3 cut(s)	42, 180, 197
DpnII	GATC	3 cut(s)	40, 178, 195
Eco88I	CYCGRG	1 cut(s)	263
FaiI	YATR	4 cut(s)	107, 149, 356, 372
FaqI	GGGAC	1 cut(s)	208
FbaI	TGATCA	2 cut(s)	178, 195
Fnu4HI	GCNGC	5 cut(s)	170, 215, 235, 256, 259
Fsp4HI	GCNGC	5 cut(s)	170, 215, 235, 256, 259
GlaI	GCGC	1 cut(s)	139
GluI	GCNGC	5 cut(s)	170, 215, 235, 256, 259
GsuI	CTGGAG	1 cut(s)	309
HaeII	RGCGCY	1 cut(s)	141
HapII	CCGG	1 cut(s)	272
HhaI	GCGC	1 cut(s)	140
Hin6I	GCGC	1 cut(s)	138
HinP1I	GCGC	1 cut(s)	138
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	4 cut(s)	209, 294, 316, 363
HpaII	CCGG	1 cut(s)	272
Hpy188III	TCNNGA	1 cut(s)	326
HpyAV	CCTTC	3 cut(s)	108, 323, 346
HpyCH4V	TGCA	2 cut(s)	186, 346
HpyF10VI	GCNNNNNNNGC	1 cut(s)	166
HpyF3I	CTNAG	2 cut(s)	110, 290
HspAI	GCGC	1 cut(s)	138
Ksp22I	TGATCA	2 cut(s)	178, 195
Kzo9I	GATC	3 cut(s)	40, 178, 195
LmnI	GCTCC	1 cut(s)	7
LpnPI	CCDG	5 cut(s)	107, 285, 302, 314, 339
Lsp1109I	GCAGC	3 cut(s)	156, 226, 270
MaeIII	GTNAC	1 cut(s)	267
MalI	GATC	3 cut(s)	42, 180, 197
MboI	GATC	3 cut(s)	40, 178, 195
MboII	GAAGA	3 cut(s)	144, 238, 290
MluCI	AATT	1 cut(s)	367
MlyI	GAGTC	1 cut(s)	357
MnlI	CCTC	5 cut(s)	21, 94, 112, 112, 272
MseI	TTAA	2 cut(s)	162, 376
MspA1I	CMGCKG	2 cut(s)	169, 255
MspI	CCGG	1 cut(s)	272
MspR9I	CCNGG	1 cut(s)	273
MwoI	GCNNNNNNNGC	1 cut(s)	166
NciI	CCSGG	1 cut(s)	273
NdeII	GATC	3 cut(s)	40, 178, 195
NlaIV	GGNNCC	1 cut(s)	334
PaeR7I	CTCGAG	1 cut(s)	263
PcsI	WCGNNNNNNNCGW	1 cut(s)	218
PfeI	GAWTC	3 cut(s)	209, 294, 316
PkrI	GCNGC	5 cut(s)	171, 216, 236, 257, 260
PleI	GAGTC	1 cut(s)	357
PpsI	GAGTC	1 cut(s)	357
PspN4I	GGNNCC	1 cut(s)	334
PspXI	VCTCGAGB	1 cut(s)	263
PvuII	CAGCTG	1 cut(s)	169
SaqAI	TTAA	2 cut(s)	162, 376
SatI	GCNGC	5 cut(s)	170, 215, 235, 256, 259
Sau3AI	GATC	3 cut(s)	40, 178, 195
SchI	GAGTC	1 cut(s)	357
ScrFI	CCNGG	1 cut(s)	273
SetI	ASST	6 cut(s)	76, 116, 162, 171, 291, 338
Sfr274I	CTCGAG	1 cut(s)	263
SlaI	CTCGAG	1 cut(s)	263
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	1 cut(s)	367
SsiI	CCGC	2 cut(s)	234, 255
StyD4I	CCNGG	1 cut(s)	271
TaqI	TCGA	2 cut(s)	264, 361
TasI	AATT	1 cut(s)	367
TauI	GCSGC	2 cut(s)	237, 258
TfiI	GAWTC	3 cut(s)	209, 294, 316
Tru1I	TTAA	2 cut(s)	162, 376
Tru9I	TTAA	2 cut(s)	162, 376
TscAI	CASTG	1 cut(s)	70
TseI	GCWGC	3 cut(s)	169, 214, 258
TspRI	CASTG	1 cut(s)	70
XhoI	CTCGAG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.