pycom10g26760

Nuclear transport factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Forward (+)
27973047 .. 27973516
470 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g26760.2

Sequence Viewer

Length: 378 bp
ATGGAAGAGCAGGCTGAAATGGTGGGGAGGGCATTTGTGGATCACTACTACCATTTATTTGACACTGATAGAGCTTCCCTCTCTTCCCTTTACCAGCCTTCCTCTATGCTGAGCTTTGAGGGGCAGAAGTTATTTGGCGCTAATGATATATCTTCCAAGCTTAATCAGCTGCCGTTTGATCAATGCAAGCATTTGATCAGCACCATTGATTCACAGCCATCGTCCCCAAGTGGCGGCATTGTGGTCTTCGTCAGCGGCAGCCTCCAGTTACCAGGGGAAGAACACCACCTGAGATTCAGCCAGATGTTCCACTTGATTCCCACTCCAGAAGGAACCTTTTTTGTGCAGAACGACATATTTCGACTCAATTATGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

126

Amino Acids

14.09

Weight (kDa)

5.13

Isoelectric Point (pI)

47.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 234, 255
AclWI GGATC 1 cut(s) 48
AfiI CCNNNNNNNGG 1 cut(s) 233
AjnI CCWGG 1 cut(s) 271
AluBI AGCT 4 cut(s) 74, 114, 160, 169
AluI AGCT 4 cut(s) 74, 114, 160, 169
AlwI GGATC 1 cut(s) 48
ApeKI GCWGC 2 cut(s) 169, 258
AspLEI GCGC 1 cut(s) 140
BbsI GAAGAC 1 cut(s) 238
BbvI GCAGC 2 cut(s) 156, 270
BccI CCATC 1 cut(s) 226
BceAI ACGGC 1 cut(s) 157
BciT130I CCWGG 1 cut(s) 273
BclI TGATCA 2 cut(s) 178, 195
BfoI RGCGCY 1 cut(s) 141
BisI GCNGC 4 cut(s) 170, 235, 256, 259
BlpI GCTNAGC 1 cut(s) 110
BlsI GCNGC 4 cut(s) 171, 236, 257, 260
Bme1390I CCNGG 1 cut(s) 273
BmiI GGNNCC 1 cut(s) 334
BmrFI CCNGG 1 cut(s) 273
BpiI GAAGAC 1 cut(s) 238
BplI GAGNNNNNCTC 2 cut(s) 63, 95
BpmI CTGGAG 2 cut(s) 248, 309
Bpu1102I GCTNAGC 1 cut(s) 110
BsaJI CCNNGG 1 cut(s) 272
Bsc4I CCNNNNNNNGG 1 cut(s) 233
Bse1I ACTGG 1 cut(s) 265
BseBI CCWGG 1 cut(s) 273
BseDI CCNNGG 1 cut(s) 272
BseLI CCNNNNNNNGG 1 cut(s) 233
BseMII CTCAG 2 cut(s) 101, 281
BseNI ACTGG 1 cut(s) 265
BseXI GCAGC 2 cut(s) 156, 270
BsgI GTGCAG 1 cut(s) 365
BslFI GGGAC 1 cut(s) 208
BslI CCNNNNNNNGG 1 cut(s) 233
BsmFI GGGAC 1 cut(s) 208
Bsp143I GATC 3 cut(s) 40, 178, 195
Bsp1720I GCTNAGC 1 cut(s) 110
BspACI CCGC 2 cut(s) 234, 255
BspCNI CTCAG 2 cut(s) 102, 282
BspLI GGNNCC 1 cut(s) 334
BspPI GGATC 1 cut(s) 48
BsrI ACTGG 1 cut(s) 265
BssECI CCNNGG 1 cut(s) 272
BssMI GATC 3 cut(s) 40, 178, 195
Bst2UI CCWGG 1 cut(s) 273
Bst6I CTCTTC 1 cut(s) 88
BstC8I GCNNGC 2 cut(s) 12, 188
BstDEI CTNAG 2 cut(s) 110, 290
BstH2I RGCGCY 1 cut(s) 141
BstHHI GCGC 1 cut(s) 140
BstKTI GATC 3 cut(s) 43, 181, 198
BstMBI GATC 3 cut(s) 40, 178, 195
BstMWI GCNNNNNNNGC 1 cut(s) 166
BstNI CCWGG 1 cut(s) 273
BstSCI CCNGG 1 cut(s) 271
BstV1I GCAGC 2 cut(s) 156, 270
BstV2I GAAGAC 1 cut(s) 238
BtsIMutI CAGTG 1 cut(s) 63
Cac8I GCNNGC 2 cut(s) 12, 188
CfoI GCGC 1 cut(s) 140
DdeI CTNAG 2 cut(s) 110, 290
DpnI GATC 3 cut(s) 42, 180, 197
DpnII GATC 3 cut(s) 40, 178, 195
Eam1104I CTCTTC 1 cut(s) 88
EarI CTCTTC 1 cut(s) 88
EcoRII CCWGG 1 cut(s) 271
FaiI YATR 4 cut(s) 107, 149, 356, 372
FaqI GGGAC 1 cut(s) 208
FbaI TGATCA 2 cut(s) 178, 195
Fnu4HI GCNGC 4 cut(s) 170, 235, 256, 259
Fsp4HI GCNGC 4 cut(s) 170, 235, 256, 259
GlaI GCGC 1 cut(s) 139
GluI GCNGC 4 cut(s) 170, 235, 256, 259
GsuI CTGGAG 2 cut(s) 248, 309
HaeII RGCGCY 1 cut(s) 141
HhaI GCGC 1 cut(s) 140
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HindIII AAGCTT 1 cut(s) 158
HinfI GANTC 4 cut(s) 209, 294, 316, 363
Hpy188III TCNNGA 1 cut(s) 326
HpyAV CCTTC 2 cut(s) 108, 323
HpyCH4V TGCA 2 cut(s) 186, 346
HpyF10VI GCNNNNNNNGC 1 cut(s) 166
HpyF3I CTNAG 2 cut(s) 110, 290
HspAI GCGC 1 cut(s) 138
Ksp22I TGATCA 2 cut(s) 178, 195
Kzo9I GATC 3 cut(s) 40, 178, 195
LpnPI CCDG 7 cut(s) 107, 258, 278, 285, 302, 314, 339
Lsp1109I GCAGC 2 cut(s) 156, 270
MaeIII GTNAC 1 cut(s) 267
MalI GATC 3 cut(s) 42, 180, 197
MboI GATC 3 cut(s) 40, 178, 195
MboII GAAGA 5 cut(s) 17, 75, 144, 238, 290
MluCI AATT 1 cut(s) 367
MlyI GAGTC 1 cut(s) 357
MnlI CCTC 5 cut(s) 21, 89, 112, 112, 272
MseI TTAA 1 cut(s) 162
MspA1I CMGCKG 2 cut(s) 169, 255
MspR9I CCNGG 1 cut(s) 273
MvaI CCWGG 1 cut(s) 273
MwoI GCNNNNNNNGC 1 cut(s) 166
NdeII GATC 3 cut(s) 40, 178, 195
NlaIV GGNNCC 1 cut(s) 334
PfeI GAWTC 3 cut(s) 209, 294, 316
PkrI GCNGC 4 cut(s) 171, 236, 257, 260
PleI GAGTC 1 cut(s) 357
PpsI GAGTC 1 cut(s) 357
Psp6I CCWGG 1 cut(s) 271
PspGI CCWGG 1 cut(s) 271
PspN4I GGNNCC 1 cut(s) 334
PvuII CAGCTG 1 cut(s) 169
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 4 cut(s) 170, 235, 256, 259
Sau3AI GATC 3 cut(s) 40, 178, 195
SchI GAGTC 1 cut(s) 357
ScrFI CCNGG 1 cut(s) 273
SetI ASST 6 cut(s) 76, 116, 162, 171, 291, 338
Sse9I AATT 1 cut(s) 367
SsiI CCGC 2 cut(s) 234, 255
StyD4I CCNGG 1 cut(s) 271
TaqI TCGA 1 cut(s) 361
TasI AATT 1 cut(s) 367
TauI GCSGC 2 cut(s) 237, 258
TfiI GAWTC 3 cut(s) 209, 294, 316
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 1 cut(s) 70
TseI GCWGC 2 cut(s) 169, 258
TspRI CASTG 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.