Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0016280

Physical Location & Seq

Genomic Coordinates Forward (+)

1488257 .. 1490637

Gene Structure 2381 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g02832.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGAACATACTTCTCCATCACTCACGAATCACATTGCTAATAATCATCTTTCTTTCATCATCTATCTCCTTTCTCAAACTTGTTTCTTGCAATTCCAATTTCCCCAAGTACCCGCTTCACTACATCTACCATTACTGTACCGACCAATACGATCAGTCTGAGAACAAAGGCTTCCACGACAACGTCGGCATCCTCCTCTCCGATCTCACCTCCAAATCGTATAACTCCAGCTTCTACAACTCCACGGCCGGAAACGAAGAACAAGACAAGGCGAACGGTCTTTTCCTTTGTCGAGGCGACATTGACGCTCAAGTTTGTCACAACTGCATCGACAATGCAGCCAAACTCCTCCGGGATAACTGCACCGACTTCCAACACACCACCATTTATTATGAAGAGTGCATGTTACGATATTCAAACCGTTCCATTTTCGCGACGAAGCAGGAGCTTCCATATCGATATTGGTGCAGCGTGAACAAGGTTTCCGACCATGTTTCCGATCAGTTCAATCAGAGTGTGTCCAAGTTGATGGGGTGGCTTGTGGACACGGCCGCGAATGGTAATACAAAACCCCTTCATTTCTCGACAGGGGAAGAAAATACAAAAACCGGTGCTAATGGTACGTCGTGGTTACATGGCATGATGCAATGCACGCCGGATATTACTGACGGTGATTGCGACAAATGTTTGAAGGCGGCCGTCGGCAGTTACCAGGAGTTCTGCGCCGGAAGAATGTGGGCGATGATTTTCGCCCCTAGTTGTCAGTTACGGTATACTACAAGCCCTTTTGGGAAGTCAGGACAACCCCCAAAGAGTGGTGGCGACGGAAGAATGAAGAACTACAAACCATACGTTGCTCTTGCAGCACTGATGCTTCTGTCCACCATATTTGTTGTACGTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010275 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022607 GO:0031224 GO:0031225 GO:0031226 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0036211 GO:0042651 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0065003 GO:0071704 GO:0071840 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Stress-antifung

Protein Analysis

302

Amino Acids

33.86

Weight (kDa)

7.09

Isoelectric Point (pI)

40.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	46 - 141	1.8e-19	Salt stress response/antifungal
Stress-antifung	PF01657	162 - 260	6e-11	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016280)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02832
malus_domestica	MD00G1101500.v1.1 MD10G1312400.v1.1
prunus_persica	Prupe.4G028400_v2.0.a1
pyrus_communis	pycom10g26370
rosa_chinensis	RchiOBHm_Chr5g0004281
rosa_laevigata	RLG00000031218
rosa_multiflora	Rmu_co8460447.1_g000001
rosa_roxburghii	Rroxscaffold_1G00071390
rosa_rugosa	Rorug04G0411100
rosa_samantha	Rh5BG037900 Rh5CG041600 Rh5DG037200
rosa_wichuraiana	Rw5G003510 Rw5G003710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	815
AccI	GTMKAC	1 cut(s)	773
AccII	CGCG	2 cut(s)	434, 554
AciI	CCGC	3 cut(s)	113, 552, 695
AcoI	YGGCCR	3 cut(s)	246, 549, 696
AfaI	GTAC	4 cut(s)	110, 139, 622, 897
AfiI	CCNNNNNNNGG	1 cut(s)	815
AgeI	ACCGGT	1 cut(s)	608
AgsI	TTSAA	3 cut(s)	417, 508, 691
AjnI	CCWGG	1 cut(s)	711
AloI	GAACNNNNNNTCC	2 cut(s)	467, 499
AluBI	AGCT	2 cut(s)	231, 448
AluI	AGCT	2 cut(s)	231, 448
AoxI	GGCC	3 cut(s)	246, 549, 696
ApeKI	GCWGC	3 cut(s)	338, 468, 863
AsiGI	ACCGGT	1 cut(s)	608
AspLEI	GCGC	1 cut(s)	725
AsuC2I	CCSGG	1 cut(s)	353
AsuHPI	GGTGA	2 cut(s)	199, 683
BbvI	GCAGC	3 cut(s)	350, 480, 875
BccI	CCATC	2 cut(s)	24, 523
BceAI	ACGGC	3 cut(s)	261, 564, 683
BcgI	CGANNNNNNTGC	2 cut(s)	447, 481
BciT130I	CCWGG	1 cut(s)	713
BcnI	CCSGG	1 cut(s)	353
BfaI	CTAG	1 cut(s)	756
BisI	GCNGC	5 cut(s)	339, 469, 552, 696, 864
BlsI	GCNGC	5 cut(s)	340, 470, 553, 697, 865
Bme1390I	CCNGG	2 cut(s)	353, 713
BmrFI	CCNGG	2 cut(s)	353, 713
BmsI	GCATC	4 cut(s)	198, 336, 633, 861
BpmI	CTGGAG	1 cut(s)	211
BpuEI	CTTGAG	1 cut(s)	294
BpuMI	CCSGG	1 cut(s)	353
Bsa29I	ATCGAT	1 cut(s)	457
BsaJI	CCNNGG	1 cut(s)	243
BsaWI	WCCGGW	1 cut(s)	608
Bsc4I	CCNNNNNNNGG	1 cut(s)	815
Bse118I	RCCGGY	1 cut(s)	608
Bse3DI	GCAATG	2 cut(s)	32, 653
BseBI	CCWGG	1 cut(s)	713
BseCI	ATCGAT	1 cut(s)	457
BseDI	CCNNGG	1 cut(s)	243
BseGI	GGATG	1 cut(s)	189
BseLI	CCNNNNNNNGG	1 cut(s)	815
BseMI	GCAATG	2 cut(s)	32, 653
BseMII	CTCAG	1 cut(s)	150
BseRI	GAGGAG	2 cut(s)	185, 338
BseX3I	CGGCCG	3 cut(s)	246, 549, 696
BseXI	GCAGC	3 cut(s)	350, 480, 875
BsgI	GTGCAG	2 cut(s)	346, 487
Bsh1236I	CGCG	2 cut(s)	434, 554
Bsh1285I	CGRYCG	3 cut(s)	249, 552, 699
BshFI	GGCC	3 cut(s)	248, 551, 698
BshTI	ACCGGT	1 cut(s)	608
BshVI	ATCGAT	1 cut(s)	457
BsiEI	CGRYCG	3 cut(s)	249, 552, 699
BsiSI	CCGG	5 cut(s)	249, 352, 609, 656, 726
BslI	CCNNNNNNNGG	1 cut(s)	815
BsnI	GGCC	3 cut(s)	248, 551, 698
Bsp143I	GATC	3 cut(s)	151, 202, 499
Bsp68I	TCGCGA	1 cut(s)	434
BspACI	CCGC	3 cut(s)	113, 552, 695
BspANI	GGCC	3 cut(s)	248, 551, 698
BspCNI	CTCAG	1 cut(s)	151
BspDI	ATCGAT	1 cut(s)	457
BspFNI	CGCG	2 cut(s)	434, 554
BspHI	TCATGA	1 cut(s)	902
BsrDI	GCAATG	2 cut(s)	32, 653
BsrFI	RCCGGY	1 cut(s)	608
BssAI	RCCGGY	1 cut(s)	608
BssECI	CCNNGG	1 cut(s)	243
BssMI	GATC	3 cut(s)	151, 202, 499
BssNAI	GTATAC	1 cut(s)	774
Bst1107I	GTATAC	1 cut(s)	774
Bst2UI	CCWGG	1 cut(s)	713
Bst4CI	ACNGT	5 cut(s)	137, 278, 422, 671, 771
Bst6I	CTCTTC	1 cut(s)	390
BstC8I	GCNNGC	1 cut(s)	653
BstDEI	CTNAG	1 cut(s)	159
BstDSI	CCRYGG	1 cut(s)	243
BstF5I	GGATG	1 cut(s)	189
BstFNI	CGCG	2 cut(s)	434, 554
BstHHI	GCGC	1 cut(s)	725
BstKTI	GATC	3 cut(s)	154, 205, 502
BstMBI	GATC	3 cut(s)	151, 202, 499
BstMCI	CGRYCG	3 cut(s)	249, 552, 699
BstMWI	GCNNNNNNNGC	2 cut(s)	652, 863
BstNI	CCWGG	1 cut(s)	713
BstNSI	RCATGY	1 cut(s)	406
BstSCI	CCNGG	2 cut(s)	351, 711
BstUI	CGCG	2 cut(s)	434, 554
BstV1I	GCAGC	3 cut(s)	350, 480, 875
BstXI	CCANNNNNNTGG	1 cut(s)	529
BstZ17I	GTATAC	1 cut(s)	774
BstZI	CGGCCG	3 cut(s)	246, 549, 696
Bsu15I	ATCGAT	1 cut(s)	457
BsuRI	GGCC	3 cut(s)	248, 551, 698
BsuTUI	ATCGAT	1 cut(s)	457
BtgI	CCRYGG	1 cut(s)	243
BtgZI	GCGATG	1 cut(s)	755
BtsCI	GGATG	1 cut(s)	189
BtsIMutI	CAGTG	1 cut(s)	866
BtuMI	TCGCGA	1 cut(s)	434
Cac8I	GCNNGC	1 cut(s)	653
CciI	TCATGA	1 cut(s)	902
CfoI	GCGC	1 cut(s)	725
Cfr10I	RCCGGY	1 cut(s)	608
ClaI	ATCGAT	1 cut(s)	457
CseI	GACGC	1 cut(s)	314
Csp6I	GTAC	4 cut(s)	109, 138, 621, 896
CspAI	ACCGGT	1 cut(s)	608
CspCI	CAANNNNNGTGG	2 cut(s)	871, 906
CviAII	CATG	5 cut(s)	403, 491, 635, 640, 903
CviJI	RGCY	9 cut(s)	171, 231, 248, 341, 448, 538, 551, 698, 783
CviKI_1	RGCY	9 cut(s)	171, 231, 248, 341, 448, 538, 551, 698, 783
CviQI	GTAC	4 cut(s)	109, 138, 621, 896
DdeI	CTNAG	1 cut(s)	159
DpnI	GATC	3 cut(s)	153, 204, 501
DpnII	GATC	3 cut(s)	151, 202, 499
EaeI	YGGCCR	3 cut(s)	246, 549, 696
EagI	CGGCCG	3 cut(s)	246, 549, 696
Eam1104I	CTCTTC	1 cut(s)	390
EarI	CTCTTC	1 cut(s)	390
EclXI	CGGCCG	3 cut(s)	246, 549, 696
Eco52I	CGGCCG	3 cut(s)	246, 549, 696
EcoRII	CCWGG	1 cut(s)	711
FaeI	CATG	5 cut(s)	406, 494, 638, 643, 906
FatI	CATG	5 cut(s)	402, 490, 634, 639, 902
FauI	CCCGC	1 cut(s)	120
FblI	GTMKAC	1 cut(s)	773
Fnu4HI	GCNGC	5 cut(s)	339, 469, 552, 696, 864
FokI	GGATG	1 cut(s)	176
Fsp4HI	GCNGC	5 cut(s)	339, 469, 552, 696, 864
FspBI	CTAG	1 cut(s)	756
GlaI	GCGC	1 cut(s)	724
GluI	GCNGC	5 cut(s)	339, 469, 552, 696, 864
GsuI	CTGGAG	1 cut(s)	211
HaeIII	GGCC	3 cut(s)	248, 551, 698
HapII	CCGG	5 cut(s)	249, 352, 609, 656, 726
HgaI	GACGC	1 cut(s)	314
HhaI	GCGC	1 cut(s)	725
Hin1II	CATG	5 cut(s)	406, 494, 638, 643, 906
Hin6I	GCGC	1 cut(s)	723
HinP1I	GCGC	1 cut(s)	723
HinfI	GANTC	1 cut(s)	27
HpaII	CCGG	5 cut(s)	249, 352, 609, 656, 726
HphI	GGTGA	2 cut(s)	199, 683
Hpy166II	GTNNAC	4 cut(s)	475, 544, 774, 882
Hpy188I	TCNGA	5 cut(s)	160, 202, 487, 499, 513
Hpy188III	TCNNGA	5 cut(s)	24, 433, 583, 798, 903
Hpy8I	GTNNAC	4 cut(s)	475, 544, 774, 882
Hpy99I	CGWCG	5 cut(s)	188, 439, 628, 704, 827
HpyAV	CCTTC	2 cut(s)	584, 685
HpyCH4III	ACNGT	5 cut(s)	137, 278, 422, 671, 771
HpyCH4IV	ACGT	4 cut(s)	183, 623, 852, 898
HpyCH4V	TGCA	9 cut(s)	90, 327, 338, 363, 402, 468, 646, 651, 863
HpyF10VI	GCNNNNNNNGC	2 cut(s)	652, 863
HpyF3I	CTNAG	1 cut(s)	159
HpySE526I	ACGT	4 cut(s)	183, 623, 852, 898
Hsp92II	CATG	5 cut(s)	406, 494, 638, 643, 906
HspAI	GCGC	1 cut(s)	723
Kzo9I	GATC	3 cut(s)	151, 202, 499
LmnI	GCTCC	1 cut(s)	445
Lsp1109I	GCAGC	3 cut(s)	350, 480, 875
LweI	GCATC	4 cut(s)	198, 336, 633, 861
MaeI	CTAG	1 cut(s)	756
MaeII	ACGT	4 cut(s)	183, 623, 852, 898
MaeIII	GTNAC	5 cut(s)	317, 405, 630, 707, 765
MalI	GATC	3 cut(s)	153, 204, 501
MboI	GATC	3 cut(s)	151, 202, 499
MboII	GAAGA	6 cut(s)	269, 407, 605, 741, 840, 847
MluCI	AATT	2 cut(s)	91, 97
MmeI	TCCRAC	2 cut(s)	397, 510
MnlI	CCTC	5 cut(s)	203, 206, 220, 287, 359
MspI	CCGG	5 cut(s)	249, 352, 609, 656, 726
MspR9I	CCNGG	2 cut(s)	353, 713
MvaI	CCWGG	1 cut(s)	713
MvnI	CGCG	2 cut(s)	434, 554
MwoI	GCNNNNNNNGC	2 cut(s)	652, 863
NciI	CCSGG	1 cut(s)	353
NdeII	GATC	3 cut(s)	151, 202, 499
NlaIII	CATG	5 cut(s)	406, 494, 638, 643, 906
NmuCI	GTSAC	1 cut(s)	317
NruI	TCGCGA	1 cut(s)	434
NspI	RCATGY	1 cut(s)	406
PagI	TCATGA	1 cut(s)	902
PcsI	WCGNNNNNNNCGW	1 cut(s)	675
PfeI	GAWTC	1 cut(s)	27
PflFI	GACNNNGTC	1 cut(s)	182
PflMI	CCANNNNNTGG	1 cut(s)	815
PfoI	TCCNGGA	1 cut(s)	351
PinAI	ACCGGT	1 cut(s)	608
PkrI	GCNGC	5 cut(s)	340, 470, 553, 697, 865
Psp6I	CCWGG	1 cut(s)	711
PspGI	CCWGG	1 cut(s)	711
PsyI	GACNNNGTC	1 cut(s)	182
RruI	TCGCGA	1 cut(s)	434
RsaI	GTAC	4 cut(s)	110, 139, 622, 897
RsaNI	GTAC	4 cut(s)	109, 138, 621, 896
SatI	GCNGC	5 cut(s)	339, 469, 552, 696, 864
Sau3AI	GATC	3 cut(s)	151, 202, 499
ScrFI	CCNGG	2 cut(s)	353, 713
SetI	ASST	8 cut(s)	186, 212, 233, 450, 483, 626, 855, 901
SfaNI	GCATC	4 cut(s)	198, 336, 633, 861
SmlI	CTYRAG	1 cut(s)	309
SmoI	CTYRAG	1 cut(s)	309
Sse9I	AATT	2 cut(s)	91, 97
SsiI	CCGC	3 cut(s)	113, 552, 695
SspMI	CTAG	1 cut(s)	756
StyD4I	CCNGG	2 cut(s)	351, 711
TaaI	ACNGT	5 cut(s)	137, 278, 422, 671, 771
TaiI	ACGT	4 cut(s)	186, 626, 855, 901
TaqI	TCGA	4 cut(s)	292, 330, 457, 584
TasI	AATT	2 cut(s)	91, 97
TauI	GCSGC	2 cut(s)	554, 698
TfiI	GAWTC	1 cut(s)	27
TscAI	CASTG	1 cut(s)	873
TseFI	GTSAC	1 cut(s)	317
TseI	GCWGC	3 cut(s)	338, 468, 863
Tsp45I	GTSAC	1 cut(s)	317
TspDTI	ATGAA	6 cut(s)	17, 45, 408, 566, 848, 891
TspGWI	ACGGA	1 cut(s)	840
TspRI	CASTG	1 cut(s)	873
Tth111I	GACNNNGTC	1 cut(s)	182
Van91I	CCANNNNNTGG	1 cut(s)	815
XceI	RCATGY	1 cut(s)	406
XcmI	CCANNNNNNNNNTGG	1 cut(s)	459
XmiI	GTMKAC	1 cut(s)	773
XspI	CTAG	1 cut(s)	756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.