Rw5G003710

Cysteine-rich receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
3649753 .. 3651975
2223 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G003710.1

Sequence Viewer

Length: 1134 bp
ATGTCCGCACTTCTCCATCACTCACAAACCACATCGCTAATTATACTCCTTTCATCATTTTTCTCCCTCCTCAAATTTGTTTCTTGCGATTCCAATTCCCAGAATCACCCGCTTCACTACATCCACCATTACTGTTCCCAAGAATACAATCTCACTGACAACCCGGGGTTCCACGACAACGTCGACATCCTCCTCTCCGATCTCACCTCCAAATCTTCTGGATCCAGCTTCTACAACTCCACGGCCGGAGACGACCACGAAAAAGTCTATGCTCTTTACCTCTGTCGAGGCGACATTAGCTCTCAAGTTTGCCATAACTGCATCGACCATGCAGCTCAAACCCTCCGGGAAAACTGCACCGACTTCCAAGACACCACCGTGTATTATGAGGAGTGCATGTTGCGATATTCAAACCGTTCCATTTTCGCCACGGAGCAGGAGCTTCCATTTCGATTTTGGTGCAGCGTGAAAAAGGTTTCCGACAACGCTACCGATGATTTTAATCAGAGTCTGACCAAGTTGATGGGCTGGCTTGTGGATAAGGCAGCGTTTGGTAATACAACTCCCATTCATTTCTCGACAGGGGAAGCAAATACGAAAACCGGTGATAATGGCACGTCGTGGTTGTATGGCTTGATGCAGTGCACGCCTGATATAACTGGGAGTGATTGCGAAAAATGTTTGAAGGCGGCTATCGGCAGTTACCAGGAGTTCTGCGCCGAAAGAATGTGGGCGATGATTTTAGCCCCTAGTTGTCAGTTACGGTATAATACAAGCCCTTTTATGAAGACAGAAAAACCCGCCATGCCAAAGAGTTCAACTGATGGAAGAGGGAAGAACTACAAATCATATGTTGCTCTTGCAACAGTGGTGCTTCTGTCCACCATATTTGTTGCCGAAACCCATAAAGGCGGTGTTGATGAACGCCTAGTCTATGGTGGCGCCTTGTCTGGGTTGCCTCCTAAATCTGGGCTCGAGGAGAGATTGATGCTTGAGCGACGTGGACAAGAATTCTTTGAGGCGAAGAGTGGCGTTGGGCTGATCGCCAACTCTATTGGCTGCTCTAATCACAGGGCTGCTGGCGTTCTGTCCGGCCGTCGTCGGTGGTGGAATTGTTGCTCCGATCCGCTCTGA

Protein Analysis

377

Amino Acids

41.99

Weight (kDa)

6.11

Isoelectric Point (pI)

43.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 45 - 139 1.3e-21 Salt stress response/antifungal
Stress-antifung PF01657 154 - 258 6.1e-12 Salt stress response/antifungal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016280)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g02832
malus_domestica MD00G1101500.v1.1 MD10G1312400.v1.1
prunus_persica Prupe.4G028400_v2.0.a1
pyrus_communis pycom10g26370
rosa_chinensis RchiOBHm_Chr5g0004281
rosa_laevigata RLG00000031218
rosa_multiflora Rmu_co8460447.1_g000001
rosa_roxburghii Rroxscaffold_1G00071390
rosa_rugosa Rorug04G0411100
rosa_samantha Rh5BG037900 Rh5CG041600 Rh5DG037200
rosa_wichuraiana Rw5G003510 Rw5G003710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 941
AccBSI CCGCTC 1 cut(s) 1129
AccI GTMKAC 1 cut(s) 183
AciI CCGC 6 cut(s) 6, 110, 689, 801, 912, 1127
AclWI GGATC 3 cut(s) 216, 229, 1118
AcoI YGGCCR 2 cut(s) 243, 1093
AcsI RAATTY 2 cut(s) 74, 1010
AcyI GRCGYC 1 cut(s) 942
AdeI CACNNNGTG 1 cut(s) 621
AfiI CCNNNNNNNGG 2 cut(s) 951, 968
AgeI ACCGGT 1 cut(s) 602
AgsI TTSAA 3 cut(s) 411, 685, 819
AjiI CACGTC 2 cut(s) 618, 1001
AjnI CCWGG 1 cut(s) 705
AleI CACNNNNGTG 1 cut(s) 377
AluBI AGCT 4 cut(s) 228, 300, 335, 442
AluI AGCT 4 cut(s) 228, 300, 335, 442
Alw21I GWGCWC 1 cut(s) 647
Alw26I GTCTC 1 cut(s) 243
Alw44I GTGCAC 1 cut(s) 643
AlwI GGATC 3 cut(s) 216, 229, 1118
AlwNI CAGNNNCTG 1 cut(s) 511
Ama87I CYCGRG 2 cut(s) 163, 974
AoxI GGCC 2 cut(s) 243, 1093
ApaLI GTGCAC 1 cut(s) 643
ApeKI GCWGC 5 cut(s) 332, 462, 545, 1059, 1076
ApoI RAATTY 2 cut(s) 74, 1010
AsiGI ACCGGT 1 cut(s) 602
AspLEI GCGC 2 cut(s) 719, 944
AsuC2I CCSGG 3 cut(s) 164, 165, 347
AsuHPI GGTGA 3 cut(s) 98, 196, 617
AvaI CYCGRG 2 cut(s) 163, 974
BaeGI GKGCMC 1 cut(s) 647
BamHI GGATCC 1 cut(s) 221
BanI GGYRCC 1 cut(s) 941
BanII GRGCYC 1 cut(s) 975
BbsI GAAGAC 1 cut(s) 794
Bbv12I GWGCWC 1 cut(s) 647
BbvI GCAGC 5 cut(s) 344, 474, 557, 1046, 1063
BccI CCATC 3 cut(s) 24, 517, 818
BceAI ACGGC 2 cut(s) 258, 1080
BcgI CGANNNNNNTGC 2 cut(s) 441, 475
BciT130I CCWGG 1 cut(s) 707
BcnI CCSGG 3 cut(s) 164, 165, 347
BcoDI GTCTC 1 cut(s) 243
BfaI CTAG 2 cut(s) 750, 929
BfoI RGCGCY 1 cut(s) 945
BisI GCNGC 6 cut(s) 333, 463, 546, 690, 1060, 1077
BlsI GCNGC 6 cut(s) 334, 464, 547, 691, 1061, 1078
Bme1390I CCNGG 4 cut(s) 164, 165, 347, 707
BmeT110I CYCGRG 2 cut(s) 163, 974
BmgBI CACGTC 2 cut(s) 618, 1001
BmiI GGNNCC 3 cut(s) 170, 223, 943
BmrFI CCNGG 4 cut(s) 164, 165, 347, 707
BmrI ACTGGG 1 cut(s) 669
BmsI GCATC 3 cut(s) 330, 627, 978
BmuI ACTGGG 1 cut(s) 669
BpiI GAAGAC 1 cut(s) 794
BpuEI CTTGAG 2 cut(s) 288, 1013
BpuMI CCSGG 3 cut(s) 164, 165, 347
BsaBI GATNNNNATC 1 cut(s) 501
BsaHI GRCGYC 1 cut(s) 942
BsaJI CCNNGG 4 cut(s) 163, 164, 240, 429
BsaWI WCCGGW 1 cut(s) 602
BsaXI ACNNNNNCTCC 2 cut(s) 383, 413
Bsc4I CCNNNNNNNGG 2 cut(s) 951, 968
Bse118I RCCGGY 1 cut(s) 602
Bse1I ACTGG 1 cut(s) 664
Bse8I GATNNNNATC 1 cut(s) 501
BseBI CCWGG 1 cut(s) 707
BseDI CCNNGG 4 cut(s) 163, 164, 240, 429
BseGI GGATG 2 cut(s) 120, 186
BseJI GATNNNNATC 1 cut(s) 501
BseLI CCNNNNNNNGG 2 cut(s) 951, 968
BseNI ACTGG 1 cut(s) 664
BseRI GAGGAG 4 cut(s) 59, 182, 404, 992
BseSI GKGCMC 1 cut(s) 647
BseX3I CGGCCG 2 cut(s) 243, 1093
BseXI GCAGC 5 cut(s) 344, 474, 557, 1046, 1063
BsgI GTGCAG 2 cut(s) 340, 481
Bsh1285I CGRYCG 2 cut(s) 246, 1096
BshFI GGCC 2 cut(s) 245, 1095
BshNI GGYRCC 1 cut(s) 941
BshTI ACCGGT 1 cut(s) 602
BsiEI CGRYCG 2 cut(s) 246, 1096
BsiHKAI GWGCWC 1 cut(s) 647
BsiHKCI CYCGRG 2 cut(s) 163, 974
BsiSI CCGG 5 cut(s) 164, 246, 346, 603, 1092
BslI CCNNNNNNNGG 2 cut(s) 951, 968
BsmAI GTCTC 1 cut(s) 243
BsmBI CGTCTC 1 cut(s) 243
BsnI GGCC 2 cut(s) 245, 1095
BsoBI CYCGRG 2 cut(s) 163, 974
Bsp1286I GDGCHC 2 cut(s) 647, 975
Bsp143I GATC 4 cut(s) 199, 221, 1041, 1123
BspACI CCGC 6 cut(s) 6, 110, 689, 801, 912, 1127
BspANI GGCC 2 cut(s) 245, 1095
BspLI GGNNCC 3 cut(s) 170, 223, 943
BspPI GGATC 3 cut(s) 216, 229, 1118
BspT107I GGYRCC 1 cut(s) 941
BsrBI CCGCTC 1 cut(s) 1129
BsrFI RCCGGY 1 cut(s) 602
BsrI ACTGG 1 cut(s) 664
BssAI RCCGGY 1 cut(s) 602
BssECI CCNNGG 4 cut(s) 163, 164, 240, 429
BssMI GATC 4 cut(s) 199, 221, 1041, 1123
BssNI GRCGYC 1 cut(s) 942
Bst2UI CCWGG 1 cut(s) 707
Bst4CI ACNGT 5 cut(s) 134, 379, 416, 765, 868
Bst6I CTCTTC 2 cut(s) 823, 1019
BstACI GRCGYC 1 cut(s) 942
BstC8I GCNNGC 3 cut(s) 530, 647, 1081
BstDSI CCRYGG 2 cut(s) 240, 429
BstF5I GGATG 2 cut(s) 120, 186
BstH2I RGCGCY 1 cut(s) 945
BstHHI GCGC 2 cut(s) 719, 944
BstKTI GATC 4 cut(s) 202, 224, 1044, 1126
BstMAI GTCTC 1 cut(s) 243
BstMBI GATC 4 cut(s) 199, 221, 1041, 1123
BstMCI CGRYCG 2 cut(s) 246, 1096
BstMWI GCNNNNNNNGC 3 cut(s) 297, 318, 646
BstNI CCWGG 1 cut(s) 707
BstNSI RCATGY 1 cut(s) 400
BstSCI CCNGG 4 cut(s) 162, 163, 345, 705
BstSLI GKGCMC 1 cut(s) 647
BstV1I GCAGC 5 cut(s) 344, 474, 557, 1046, 1063
BstV2I GAAGAC 1 cut(s) 794
BstX2I RGATCY 1 cut(s) 221
BstXI CCANNNNNNTGG 1 cut(s) 523
BstYI RGATCY 1 cut(s) 221
BstZI CGGCCG 2 cut(s) 243, 1093
BsuRI GGCC 2 cut(s) 245, 1095
BtgI CCRYGG 2 cut(s) 240, 429
BtgZI GCGATG 2 cut(s) 18, 749
BtrI CACGTC 2 cut(s) 618, 1001
BtsCI GGATG 2 cut(s) 120, 186
BtsI GCAGTG 1 cut(s) 647
BtsIMutI CAGTG 3 cut(s) 153, 647, 873
Cac8I GCNNGC 3 cut(s) 530, 647, 1081
CaiI CAGNNNCTG 1 cut(s) 511
CfoI GCGC 2 cut(s) 719, 944
Cfr10I RCCGGY 1 cut(s) 602
Cfr9I CCCGGG 1 cut(s) 163
CspAI ACCGGT 1 cut(s) 602
CspCI CAANNNNNGTGG 2 cut(s) 871, 906
CviAII CATG 3 cut(s) 329, 397, 805
DinI GGCGCC 1 cut(s) 943
DpnI GATC 4 cut(s) 201, 223, 1043, 1125
DpnII GATC 4 cut(s) 199, 221, 1041, 1123
DraIII CACNNNGTG 1 cut(s) 621
EaeI YGGCCR 2 cut(s) 243, 1093
EagI CGGCCG 2 cut(s) 243, 1093
Eam1104I CTCTTC 2 cut(s) 823, 1019
EarI CTCTTC 2 cut(s) 823, 1019
EclXI CGGCCG 2 cut(s) 243, 1093
Eco24I GRGCYC 1 cut(s) 975
Eco52I CGGCCG 2 cut(s) 243, 1093
Eco88I CYCGRG 2 cut(s) 163, 974
EcoRI GAATTC 1 cut(s) 1010
EcoRII CCWGG 1 cut(s) 705
EcoT38I GRGCYC 1 cut(s) 975
EgeI GGCGCC 1 cut(s) 943
EheI GGCGCC 1 cut(s) 943
Esp3I CGTCTC 1 cut(s) 243
FaeI CATG 3 cut(s) 332, 400, 808
FatI CATG 3 cut(s) 328, 396, 804
FauI CCCGC 2 cut(s) 117, 808
FauNDI CATATG 1 cut(s) 850
FblI GTMKAC 1 cut(s) 183
Fnu4HI GCNGC 6 cut(s) 333, 463, 546, 690, 1060, 1077
FokI GGATG 2 cut(s) 107, 173
FriOI GRGCYC 1 cut(s) 975
Fsp4HI GCNGC 6 cut(s) 333, 463, 546, 690, 1060, 1077
FspBI CTAG 2 cut(s) 750, 929
GlaI GCGC 2 cut(s) 718, 943
GluI GCNGC 6 cut(s) 333, 463, 546, 690, 1060, 1077
HaeII RGCGCY 1 cut(s) 945
HaeIII GGCC 2 cut(s) 245, 1095
HapII CCGG 5 cut(s) 164, 246, 346, 603, 1092
HhaI GCGC 2 cut(s) 719, 944
Hin1I GRCGYC 1 cut(s) 942
Hin1II CATG 3 cut(s) 332, 400, 808
Hin6I GCGC 2 cut(s) 717, 942
HinP1I GCGC 2 cut(s) 717, 942
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HinfI GANTC 3 cut(s) 89, 103, 508
HpaII CCGG 5 cut(s) 164, 246, 346, 603, 1092
HphI GGTGA 3 cut(s) 98, 196, 617
Hpy166II GTNNAC 4 cut(s) 184, 645, 882, 1004
Hpy188I TCNGA 6 cut(s) 199, 481, 507, 513, 1123, 1133
Hpy188III TCNNGA 2 cut(s) 219, 577
Hpy8I GTNNAC 4 cut(s) 184, 645, 882, 1004
Hpy99I CGWCG 5 cut(s) 185, 622, 1002, 1101, 1104
HpyAV CCTTC 1 cut(s) 679
HpyCH4III ACNGT 5 cut(s) 134, 379, 416, 765, 868
HpyCH4IV ACGT 3 cut(s) 180, 617, 1000
HpyCH4V TGCA 8 cut(s) 321, 332, 357, 396, 462, 640, 645, 863
HpyF10VI GCNNNNNNNGC 3 cut(s) 297, 318, 646
HpySE526I ACGT 3 cut(s) 180, 617, 1000
Hsp92I GRCGYC 1 cut(s) 942
Hsp92II CATG 3 cut(s) 332, 400, 808
HspAI GCGC 2 cut(s) 717, 942
KasI GGCGCC 1 cut(s) 941
Kzo9I GATC 4 cut(s) 199, 221, 1041, 1123
LmnI GCTCC 3 cut(s) 433, 439, 1124
Lsp1109I GCAGC 5 cut(s) 344, 474, 557, 1046, 1063
LweI GCATC 3 cut(s) 330, 627, 978
MaeI CTAG 2 cut(s) 750, 929
MaeII ACGT 3 cut(s) 180, 617, 1000
MaeIII GTNAC 2 cut(s) 701, 759
MalI GATC 4 cut(s) 201, 223, 1043, 1125
MbiI CCGCTC 1 cut(s) 1129
MboI GATC 4 cut(s) 199, 221, 1041, 1123
MboII GAAGA 5 cut(s) 207, 799, 840, 847, 1036
MflI RGATCY 1 cut(s) 221
MhlI GDGCHC 2 cut(s) 647, 975
MluCI AATT 5 cut(s) 39, 74, 94, 1010, 1111
Mly113I GGCGCC 1 cut(s) 942
MlyI GAGTC 1 cut(s) 517
MmeI TCCRAC 1 cut(s) 504
MseI TTAA 1 cut(s) 501
MslI CAYNNNNRTG 1 cut(s) 377
MspI CCGG 5 cut(s) 164, 246, 346, 603, 1092
MspR9I CCNGG 4 cut(s) 164, 165, 347, 707
MvaI CCWGG 1 cut(s) 707
MwoI GCNNNNNNNGC 3 cut(s) 297, 318, 646
NarI GGCGCC 1 cut(s) 942
NciI CCSGG 3 cut(s) 164, 165, 347
NdeI CATATG 1 cut(s) 850
NdeII GATC 4 cut(s) 199, 221, 1041, 1123
NlaIII CATG 3 cut(s) 332, 400, 808
NlaIV GGNNCC 3 cut(s) 170, 223, 943
NspI RCATGY 1 cut(s) 400
OliI CACNNNNGTG 1 cut(s) 377
PaeR7I CTCGAG 1 cut(s) 974
PcsI WCGNNNNNNNCGW 1 cut(s) 180
PfeI GAWTC 2 cut(s) 89, 103
PflFI GACNNNGTC 1 cut(s) 179
PfoI TCCNGGA 1 cut(s) 345
PinAI ACCGGT 1 cut(s) 602
PkrI GCNGC 6 cut(s) 334, 464, 547, 691, 1061, 1078
PleI GAGTC 1 cut(s) 516
PluTI GGCGCC 1 cut(s) 945
PpsI GAGTC 1 cut(s) 516
Psp6I CCWGG 1 cut(s) 705
PspGI CCWGG 1 cut(s) 705
PspN4I GGNNCC 3 cut(s) 170, 223, 943
PspXI VCTCGAGB 1 cut(s) 974
PstNI CAGNNNCTG 1 cut(s) 511
PsuI RGATCY 1 cut(s) 221
PsyI GACNNNGTC 1 cut(s) 179
RseI CAYNNNNRTG 1 cut(s) 377
SalI GTCGAC 1 cut(s) 182
SaqAI TTAA 1 cut(s) 501
SatI GCNGC 6 cut(s) 333, 463, 546, 690, 1060, 1077
Sau3AI GATC 4 cut(s) 199, 221, 1041, 1123
SchI GAGTC 1 cut(s) 517
ScrFI CCNGG 4 cut(s) 164, 165, 347, 707
SduI GDGCHC 2 cut(s) 647, 975
SfaNI GCATC 3 cut(s) 330, 627, 978
SfoI GGCGCC 1 cut(s) 943
Sfr274I CTCGAG 1 cut(s) 974
SlaI CTCGAG 1 cut(s) 974
SmaI CCCGGG 1 cut(s) 165
SmiMI CAYNNNNRTG 1 cut(s) 377
SmlI CTYRAG 3 cut(s) 303, 974, 992
SmoI CTYRAG 3 cut(s) 303, 974, 992
Sse9I AATT 5 cut(s) 39, 74, 94, 1010, 1111
SsiI CCGC 6 cut(s) 6, 110, 689, 801, 912, 1127
SspDI GGCGCC 1 cut(s) 941
SspMI CTAG 2 cut(s) 750, 929
StyD4I CCNGG 4 cut(s) 162, 163, 345, 705
TaaI ACNGT 5 cut(s) 134, 379, 416, 765, 868
TaiI ACGT 3 cut(s) 183, 620, 1003
TaqI TCGA 6 cut(s) 183, 286, 324, 451, 578, 975
TasI AATT 5 cut(s) 39, 74, 94, 1010, 1111
TauI GCSGC 1 cut(s) 692
TfiI GAWTC 2 cut(s) 89, 103
Tru1I TTAA 1 cut(s) 501
Tru9I TTAA 1 cut(s) 501
TscAI CASTG 3 cut(s) 160, 647, 873
TseI GCWGC 5 cut(s) 332, 462, 545, 1059, 1076
TspDTI ATGAA 4 cut(s) 42, 560, 800, 936
TspGWI ACGGA 1 cut(s) 446
TspMI CCCGGG 1 cut(s) 163
TspRI CASTG 3 cut(s) 160, 647, 873
Tth111I GACNNNGTC 1 cut(s) 179
VneI GTGCAC 1 cut(s) 643
XapI RAATTY 2 cut(s) 74, 1010
XceI RCATGY 1 cut(s) 400
XcmI CCANNNNNNNNNTGG 1 cut(s) 453
XhoI CTCGAG 1 cut(s) 974
XmaI CCCGGG 1 cut(s) 163
XmiI GTMKAC 1 cut(s) 183
XspI CTAG 2 cut(s) 750, 929
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.